Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008111

Physical Location & Seq

Genomic Coordinates Forward (+)

54814483 .. 54817693

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACGAACACTGCTATGGTTGTTCCTTCGTTCTCAAGAATTGTCGCAAGTTTTCCAATTAAGAGGCGTAATTTGCTACCAGTGATAAGTTTCCTTGCCCGGTCCCAGCATCAAGTAGATGGGTCGACGTTTATAGAGCATCTTGGGTCCCACCCGTTTTACATGGACGTGAGGTCACCGTCCGGTTCAATTCGGTTCGACCCGCTGCGACTGTTACGACGTCGACTTCGTTGCCCGGTAGAGGCTTCAAGTGACGGTGCTGTCTTGAGGCAAAGATATGGTAGTGAAGTTTCAATAGCTTCGTGCATGGTGTTGATGGATGCCTATGATCTTCATCACAGAGAGGAATACGACATCGAAGAAGTACAACAACACTGCAACCACACATGTAACAACCCAACACTCTCGCCGTTCCTTGATTTCATCAGTGAATCACGACCCTTAGGATTCCCATTTGACTTTGATCTTGGTGGAGGTTTCATCTTCGTCGACGAGTTTTTGTCTGTACCGAAATTCGCACCCAATCCTCTCTCTCAGAAAGATATTCAAGGGAGGCTTGACAAAGAACAAGCGATTCTTTGCTTTGCTCAGCTCATCGCATTGATGCAGATAGGGAAACTCTATGTTGGATATTATGTGGCTATGAAAGGGTTCTATGCTTTGCTTATCGGCATTGGGGTCGGAATTCATGGTGTCCTACTTTTCATAACATTGATTGGAAAGATGTTTGTGAACCTTGGTTCAGCGGGGAGTGGTCTAGCTTTACGCAGAGAAGGTCCTCTCGATAATTGTCCTTTAATGATAATTATTCTTTGTTTCCAGAGAACGGGGGAAGGAGGAGGAGGAGGAGGATCAGACCAACAGCAGAGAGTTTCTCCACTGTTTGAGATTTGCAATCGACATCAATCCAGACAAAGATTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

309

Amino Acids

34.27

Weight (kDa)

8.12

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008111)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28410 FvH4_4g00590
rosa_chinensis	RchiOBHm_Chr2g0134111 RchiOBHm_Chr5g0002031 RchiOBHm_Chr7g0215551 RchiOBHm_Chr7g0228431
rosa_laevigata	RLG00000019702 RLG00000022667 RLG00000034803
rosa_multiflora	Rmu_sc0039029.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026190 Rroxscaffold_1G00035480 Rroxscaffold_3G00255880 Rroxscaffold_3G00259100 Rroxscaffold_5G00358790 Rroxscaffold_6G00410130
rosa_rugosa	Rorug05G0224200
rosa_samantha	Rh2AG558900 Rh3AG286500 Rh5AG156600 Rh5AG305700 Rh5DG047000 Rh5DG343000
rosa_wichuraiana	Rw5G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	223
AccI	GTMKAC	3 cut(s)	125, 223, 489
AciI	CCGC	2 cut(s)	203, 746
AclWI	GGATC	1 cut(s)	859
AcsI	RAATTY	2 cut(s)	512, 684
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	366, 507
AfiI	CCNNNNNNNGG	2 cut(s)	241, 826
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	189, 249, 294, 548
AhdI	GACNNNNNGTC	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	169
AluBI	AGCT	3 cut(s)	299, 592, 761
AluI	AGCT	3 cut(s)	299, 592, 761
AlwI	GGATC	1 cut(s)	859
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	512, 684
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp700I	GAANNNNTTC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	102, 147, 776
AsuC2I	CCSGG	2 cut(s)	100, 236
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	102, 147, 776
AxyI	CCTNAGG	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	113, 310
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	4 cut(s)	213, 247, 661, 695
BcnI	CCSGG	2 cut(s)	100, 236
BfaI	CTAG	1 cut(s)	758
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	100, 236
Bme18I	GGWCC	3 cut(s)	102, 147, 776
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	102, 147, 776
BmiI	GGNNCC	3 cut(s)	104, 148, 149
BmrFI	CCNGG	2 cut(s)	100, 236
BmsI	GCATC	4 cut(s)	118, 148, 310, 594
BplI	GAGNNNNNCTC	2 cut(s)	859, 891
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	2 cut(s)	19, 286
BpuMI	CCSGG	2 cut(s)	100, 236
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	736
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 826
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	442
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	241, 826
BseMII	CTCAG	2 cut(s)	548, 602
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	4 cut(s)	852, 855, 858, 861
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	100, 183, 236
BslFI	GGGAC	2 cut(s)	88, 133
BslI	CCNNNNNNNGG	2 cut(s)	241, 826
BsmFI	GGGAC	2 cut(s)	88, 133
Bsp143I	GATC	3 cut(s)	328, 463, 851
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	2 cut(s)	203, 746
BspCNI	CTCAG	2 cut(s)	547, 601
BspLI	GGNNCC	3 cut(s)	104, 148, 149
BspPI	GGATC	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	736
BssMI	GATC	3 cut(s)	328, 463, 851
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	4 cut(s)	180, 213, 257, 882
BstACI	GRCGYC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	442, 534, 588
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	3 cut(s)	331, 466, 854
BstMBI	GATC	3 cut(s)	328, 463, 851
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	390
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	98, 234
BstV1I	GCAGC	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	2 cut(s)	9, 373
BtsIMutI	CAGTG	5 cut(s)	9, 87, 373, 433, 878
Cfr13I	GGNCC	3 cut(s)	102, 147, 776
Csp6I	GTAC	2 cut(s)	365, 506
CviAII	CATG	4 cut(s)	163, 307, 387, 689
CviJI	RGCY	6 cut(s)	245, 299, 556, 592, 641, 761
CviKI_1	RGCY	6 cut(s)	245, 299, 556, 592, 641, 761
CviQI	GTAC	2 cut(s)	365, 506
DdeI	CTNAG	3 cut(s)	442, 534, 588
DpnI	GATC	3 cut(s)	330, 465, 853
DpnII	GATC	3 cut(s)	328, 463, 851
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	736
Eco47I	GGWCC	3 cut(s)	102, 147, 776
Eco81I	CCTNAGG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	147, 776
EcoO65I	GGTNACC	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	4 cut(s)	166, 310, 390, 692
FalI	AAGNNNNNCTT	4 cut(s)	540, 572, 561, 593
FaqI	GGGAC	2 cut(s)	88, 133
FatI	CATG	4 cut(s)	162, 306, 386, 688
FauI	CCCGC	2 cut(s)	210, 739
FblI	GTMKAC	3 cut(s)	125, 223, 489
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	1 cut(s)	206
GsaI	CCCAGC	1 cut(s)	109
HapII	CCGG	3 cut(s)	100, 183, 236
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	166, 310, 390, 692
HincII	GTYRAC	3 cut(s)	126, 224, 490
HindII	GTYRAC	3 cut(s)	126, 224, 490
HinfI	GANTC	3 cut(s)	431, 447, 574
HpaII	CCGG	3 cut(s)	100, 183, 236
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	4 cut(s)	126, 224, 490, 733
Hpy188I	TCNGA	3 cut(s)	537, 683, 856
Hpy188III	TCNNGA	6 cut(s)	36, 265, 435, 782, 820, 909
Hpy8I	GTNNAC	4 cut(s)	126, 224, 490, 733
Hpy99I	CGWCG	5 cut(s)	130, 222, 225, 491, 494
HpyAV	CCTTC	3 cut(s)	36, 767, 827
HpyCH4III	ACNGT	4 cut(s)	180, 213, 257, 882
HpyCH4IV	ACGT	3 cut(s)	128, 168, 220
HpyCH4V	TGCA	4 cut(s)	306, 378, 607, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	3 cut(s)	442, 534, 588
HpySE526I	ACGT	3 cut(s)	128, 168, 220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	166, 310, 390, 692
KflI	GGGWCCC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	328, 463, 851
LpnPI	CCDG	7 cut(s)	93, 113, 119, 196, 249, 833, 922
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	4 cut(s)	118, 148, 310, 594
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	3 cut(s)	128, 168, 220
MaeIII	GTNAC	4 cut(s)	174, 213, 251, 389
MalI	GATC	3 cut(s)	330, 465, 853
MboI	GATC	3 cut(s)	328, 463, 851
MboII	GAAGA	3 cut(s)	323, 371, 475
MluCI	AATT	8 cut(s)	39, 57, 70, 189, 512, 684, 787, 804
MmeI	TCCRAC	2 cut(s)	607, 661
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	2 cut(s)	60, 797
MslI	CAYNNNNRTG	2 cut(s)	14, 167
MspA1I	CMGCKG	2 cut(s)	205, 746
MspI	CCGG	3 cut(s)	100, 183, 236
MspR9I	CCNGG	2 cut(s)	100, 236
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	2 cut(s)	100, 236
NdeII	GATC	3 cut(s)	328, 463, 851
NlaIII	CATG	4 cut(s)	166, 310, 390, 692
NlaIV	GGNNCC	3 cut(s)	104, 148, 149
NmuCI	GTSAC	2 cut(s)	174, 251
NspI	RCATGY	1 cut(s)	390
PciI	ACATGT	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	431, 447, 574
PkrI	GCNGC	1 cut(s)	207
PpuMI	RGGWCCY	2 cut(s)	147, 776
PscI	ACATGT	1 cut(s)	386
Psp5II	RGGWCCY	2 cut(s)	147, 776
PspEI	GGTNACC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	104, 148, 149
PspPI	GGNCC	3 cut(s)	102, 147, 776
PspPPI	RGGWCCY	2 cut(s)	147, 776
RsaI	GTAC	2 cut(s)	366, 507
RsaNI	GTAC	2 cut(s)	365, 506
RseI	CAYNNNNRTG	2 cut(s)	14, 167
SalI	GTCGAC	3 cut(s)	124, 222, 488
SaqAI	TTAA	2 cut(s)	60, 797
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	328, 463, 851
Sau96I	GGNCC	3 cut(s)	102, 147, 776
ScrFI	CCNGG	2 cut(s)	100, 236
SfaNI	GCATC	4 cut(s)	118, 148, 310, 594
SgrDI	CGTCGACG	1 cut(s)	488
SinI	GGWCC	3 cut(s)	102, 147, 776
SmiMI	CAYNNNNRTG	2 cut(s)	14, 167
SmlI	CTYRAG	2 cut(s)	34, 265
SmoI	CTYRAG	2 cut(s)	34, 265
Sse9I	AATT	8 cut(s)	39, 57, 70, 189, 512, 684, 787, 804
SsiI	CCGC	2 cut(s)	203, 746
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	2 cut(s)	98, 234
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	4 cut(s)	180, 213, 257, 882
TaiI	ACGT	3 cut(s)	131, 171, 223
TaqI	TCGA	7 cut(s)	125, 198, 223, 357, 489, 783, 898
TasI	AATT	8 cut(s)	39, 57, 70, 189, 512, 684, 787, 804
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	431, 447, 574
Tru1I	TTAA	2 cut(s)	60, 797
Tru9I	TTAA	2 cut(s)	60, 797
TscAI	CASTG	5 cut(s)	16, 87, 380, 433, 885
TseFI	GTSAC	2 cut(s)	174, 251
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	2 cut(s)	174, 251
TspDTI	ATGAA	6 cut(s)	323, 412, 469, 659, 677, 694
TspRI	CASTG	5 cut(s)	16, 87, 380, 433, 885
VpaK11BI	GGWCC	3 cut(s)	102, 147, 776
XapI	RAATTY	2 cut(s)	512, 684
XceI	RCATGY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XmiI	GTMKAC	3 cut(s)	125, 223, 489
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	758
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.