Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039029.1

Orthogroup ID

OG0008111

Physical Location & Seq

Genomic Coordinates Reverse (-)

111 .. 675

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039029.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtgcaagagtggtggaggtgttgtggcgtatgcagaatcacagtcagatgttggctctcctcctattgattctaatcagaatgaggttaagaaaaagaaagtggtggttcttgggacaggatgggctggtactagtttccttaagcatgtggatgcttcacattatgatgttcaggttgtatcacccagaaactattttgcgtttacccctttgttacctagtgtcacatgtggaacggttgaagcacgaagcatagtagaaccagtgcgtaaaattataaagaaggttagtgacacattcggaagcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

104

Amino Acids

11.1

Weight (kDa)

8.98

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008111)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28410 FvH4_4g00590
rosa_chinensis	RchiOBHm_Chr2g0134111 RchiOBHm_Chr5g0002031 RchiOBHm_Chr7g0215551 RchiOBHm_Chr7g0228431
rosa_laevigata	RLG00000019702 RLG00000022667 RLG00000034803
rosa_multiflora	Rmu_sc0039029.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026190 Rroxscaffold_1G00035480 Rroxscaffold_3G00255880 Rroxscaffold_3G00259100 Rroxscaffold_5G00358790 Rroxscaffold_6G00410130
rosa_rugosa	Rorug05G0224200
rosa_samantha	Rh2AG558900 Rh3AG286500 Rh5AG156600 Rh5AG305700 Rh5DG047000 Rh5DG343000
rosa_wichuraiana	Rw5G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AfaI	GTAC	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	177
BccI	CCATC	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	3 cut(s)	135, 222, 313
BfrI	CTTAAG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	75
BseGI	GGATG	2 cut(s)	128, 160
BseJI	GATNNNNATC	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BspTI	CTTAAG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	45, 241
BstAFI	CTTAAG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	128, 160
BstNSI	RCATGY	2 cut(s)	152, 234
BtsCI	GGATG	2 cut(s)	128, 160
BtsIMutI	CAGTG	1 cut(s)	273
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	149, 231
CviJI	RGCY	2 cut(s)	57, 128
CviKI_1	RGCY	2 cut(s)	57, 128
CviQI	GTAC	1 cut(s)	132
FaeI	CATG	2 cut(s)	152, 234
FaiI	YATR	6 cut(s)	33, 150, 168, 232, 257, 281
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	148, 230
FokI	GGATG	2 cut(s)	135, 167
FspBI	CTAG	3 cut(s)	135, 222, 313
HgaI	GACGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	152, 234
HinfI	GANTC	2 cut(s)	38, 71
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	49, 81, 305
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	45, 241
HpyCH4V	TGCA	2 cut(s)	6, 35
Hsp92II	CATG	2 cut(s)	152, 234
LpnPI	CCDG	5 cut(s)	105, 114, 161, 202, 279
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	135, 222, 313
MaeIII	GTNAC	3 cut(s)	216, 226, 293
MluCI	AATT	1 cut(s)	276
MnlI	CCTC	3 cut(s)	11, 72, 79
MseI	TTAA	2 cut(s)	90, 144
MslI	CAYNNNNRTG	2 cut(s)	153, 168
MspCI	CTTAAG	1 cut(s)	143
NlaIII	CATG	2 cut(s)	152, 234
NmuCI	GTSAC	2 cut(s)	226, 293
NspI	RCATGY	2 cut(s)	152, 234
PciI	ACATGT	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	38, 71
PscI	ACATGT	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	281
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	153, 168
SaqAI	TTAA	2 cut(s)	90, 144
SetI	ASST	5 cut(s)	22, 90, 180, 223, 291
SfaNI	GCATC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	153, 168
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	1 cut(s)	276
SspMI	CTAG	3 cut(s)	135, 222, 313
TaaI	ACNGT	2 cut(s)	45, 241
TasI	AATT	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	38, 71
Tru1I	TTAA	2 cut(s)	90, 144
Tru9I	TTAA	2 cut(s)	90, 144
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	226, 293
Tsp45I	GTSAC	2 cut(s)	226, 293
TspRI	CASTG	1 cut(s)	273
Vha464I	CTTAAG	1 cut(s)	143
XceI	RCATGY	2 cut(s)	152, 234
XspI	CTAG	3 cut(s)	135, 222, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.