Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008111

Physical Location & Seq

Genomic Coordinates Reverse (-)

53226110 .. 53234584

Gene Structure 8475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTGTTCGTGGGTGAGTAGAGCAGAGCGTGGGATGCTCCAGAGTGTGGGACACTCCAACCCGAGCATGGGAGGCTCCCTTATTTGTATGATATCAAACTGTATTTCTGCACTCTTCGATCTTCAGCCAAACTGTTGGCTTCAAAGTTGGCTGAGAAGGGAAATCCAAGCTCTTAGCAGGTATCTTGAACAAACAACTAATGTTTTGGTTCCTGTGGTGGCGGCTATGTGGCTTATGCTCAAGCGAACTCAAGACTCCGACCTGATCAGTAGTGCACCTGATGTGGAAAGGTGGGCTGGAACAACTTTCTCAGGGAATCTGAAAAATTTCTCATATGATGTTCATGTCGTATCTCCTTGGAATTATTTTGCATTCGCCCCTTTACTACCAAGTGTTACCTGTGGAACTGTGGAACCTTGGAGCATTGTTGAACCAATTCGTAACATTCACAGTAAGATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

6.81

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008111)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28410 FvH4_4g00590
rosa_chinensis	RchiOBHm_Chr2g0134111 RchiOBHm_Chr5g0002031 RchiOBHm_Chr7g0215551 RchiOBHm_Chr7g0228431
rosa_laevigata	RLG00000019702 RLG00000022667 RLG00000034803
rosa_multiflora	Rmu_sc0039029.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026190 Rroxscaffold_1G00035480 Rroxscaffold_3G00255880 Rroxscaffold_3G00259100 Rroxscaffold_5G00358790 Rroxscaffold_6G00410130
rosa_rugosa	Rorug05G0224200
rosa_samantha	Rh2AG558900 Rh3AG286500 Rh5AG156600 Rh5AG305700 Rh5DG047000 Rh5DG343000
rosa_wichuraiana	Rw5G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	46
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	46, 67, 68
AgsI	TTSAA	3 cut(s)	143, 188, 431
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	2 cut(s)	326, 435
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	76, 210, 414
BmsI	GCATC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	224, 234
BsaJI	CCNNGG	2 cut(s)	356, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 67, 68
BseDI	CCNNGG	2 cut(s)	356, 416
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	46, 67, 68
BseMII	CTCAG	2 cut(s)	143, 324
BseSI	GKGCMC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	46, 67, 68
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	118, 264
BspACI	CCGC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	144, 323
BspLI	GGNNCC	3 cut(s)	76, 210, 414
BspMI	ACCTGC	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	356, 416
BssMI	GATC	2 cut(s)	118, 264
BssT1I	CCWWGG	2 cut(s)	356, 416
Bst4CI	ACNGT	4 cut(s)	101, 134, 409, 452
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	152, 173, 310
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	121, 267
BstMBI	GATC	2 cut(s)	118, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 72
BstSLI	GKGCMC	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	67, 344
CviJI	RGCY	8 cut(s)	75, 127, 139, 151, 170, 224, 232, 296
CviKI_1	RGCY	8 cut(s)	75, 127, 139, 151, 170, 224, 232, 296
DdeI	CTNAG	3 cut(s)	152, 173, 310
DpnI	GATC	2 cut(s)	120, 266
DpnII	GATC	2 cut(s)	118, 264
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	356, 416
Eco32I	GATATC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	356, 416
ErhI	CCWWGG	2 cut(s)	356, 416
FaeI	CATG	2 cut(s)	70, 347
FaiI	YATR	8 cut(s)	68, 89, 227, 236, 334, 336, 345, 463
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	66, 343
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	70, 347
HinfI	GANTC	2 cut(s)	254, 316
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	259, 321
Hpy188III	TCNNGA	3 cut(s)	40, 185, 251
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	4 cut(s)	101, 134, 409, 452
HpyCH4V	TGCA	3 cut(s)	110, 275, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 72
HpyF3I	CTNAG	3 cut(s)	152, 173, 310
Hsp92II	CATG	2 cut(s)	70, 347
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	118, 264
LmnI	GCTCC	3 cut(s)	42, 80, 420
LpnPI	CCDG	8 cut(s)	53, 163, 225, 275, 282, 291, 297, 412
LweI	GCATC	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	394, 440
MalI	GATC	2 cut(s)	120, 266
MboI	GATC	2 cut(s)	118, 264
MboII	GAAGA	2 cut(s)	106, 113
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	3 cut(s)	325, 361, 435
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	81, 282
MnlI	CCTC	1 cut(s)	65
MroXI	GAANNNNTTC	2 cut(s)	326, 435
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	34, 72
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	2 cut(s)	118, 264
NlaIII	CATG	2 cut(s)	70, 347
NlaIV	GGNNCC	3 cut(s)	76, 210, 414
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	2 cut(s)	326, 435
PfeI	GAWTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	76, 210, 414
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	118, 264
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	7 cut(s)	172, 182, 264, 280, 293, 401, 418
SfaNI	GCATC	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	239, 249
SmoI	CTYRAG	2 cut(s)	239, 249
Sse9I	AATT	3 cut(s)	325, 361, 435
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	356, 416
TaaI	ACNGT	4 cut(s)	101, 134, 409, 452
TaqI	TCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	325, 361, 435
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	46
VneI	GTGCAC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmnI	GAANNNNTTC	2 cut(s)	326, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.