Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008111

Physical Location & Seq

Genomic Coordinates Reverse (-)

78992451 .. 78993874

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG558900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACCATCTCGTCCTTCTTCATCAGAGCTTCAAGAGCTTTCCATGGATACCCTTTTGCTCCCCAGCTTCTACTGCTCGGGACTATCAGTGGTGGAGGTGTTGTGGCGTATGCAGAATCACAGTCAGATGTTGGCTCTCCTCCTATTGATTCTAATCAGAATGAGATTAAGAAAAAGAAAGTGGTGGTTCTTGGGACAGGATGGGCTGGTACTAGTTTCCTTAAGCATGTGGATGCTTCACATTATGATGTTCAGGTTGTATCACCCAGAAACTATTTTGCGTTTACCCCTTTGTTACCTAGTGTCACATGTGGAACGGTTGAAGCACGAAGCATAGTAGAACCAGTGCGTAAAATTATAAAGAAGAGAAGTGGAGAGATCAAATATTATGAAGCAGAATGTATCAAGATTGATGCTGCAAATAAGAATGTTCACCTCCGGGCTAATACTGATAACCCATTGATAGGAACTCCTGAATTTTCCCTGGAATATGACTACTTGATCGTAGCTATAGGAGCACAAGTAAACACGTTTAACACCCCTGGGGTAAAGGAGAACTGTCATTTTCTGAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005777 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0055114 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

192

Amino Acids

21.04

Weight (kDa)

8.71

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	59 - 190	4.7e-21	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008111)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28410 FvH4_4g00590
rosa_chinensis	RchiOBHm_Chr2g0134111 RchiOBHm_Chr5g0002031 RchiOBHm_Chr7g0215551 RchiOBHm_Chr7g0228431
rosa_laevigata	RLG00000019702 RLG00000022667 RLG00000034803
rosa_multiflora	Rmu_sc0039029.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026190 Rroxscaffold_1G00035480 Rroxscaffold_3G00255880 Rroxscaffold_3G00259100 Rroxscaffold_5G00358790 Rroxscaffold_6G00410130
rosa_rugosa	Rorug05G0224200
rosa_samantha	Rh2AG558900 Rh3AG286500 Rh5AG156600 Rh5AG305700 Rh5DG047000 Rh5DG343000
rosa_wichuraiana	Rw5G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	308, 528
AgsI	TTSAA	2 cut(s)	33, 323
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	2 cut(s)	483, 541
AluBI	AGCT	4 cut(s)	29, 38, 67, 509
AluI	AGCT	4 cut(s)	29, 38, 67, 509
Alw21I	GWGCWC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	255, 425
AvaI	CYCGRG	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	14, 195
BciT130I	CCWGG	2 cut(s)	485, 543
BciVI	GTATCC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	440
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 300
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	440, 485, 543
BmeT110I	CYCGRG	1 cut(s)	77
BmrFI	CCNGG	3 cut(s)	440, 485, 543
BmsI	GCATC	2 cut(s)	223, 403
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	43, 483, 541, 542
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	485, 543
BseDI	CCNNGG	4 cut(s)	43, 483, 541, 542
BseGI	GGATG	2 cut(s)	206, 238
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	2 cut(s)	94, 208
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	94, 208
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	378, 501
Bsp19I	CCATGG	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	4 cut(s)	43, 483, 541, 542
BssMI	GATC	2 cut(s)	378, 501
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	485, 543
Bst4CI	ACNGT	3 cut(s)	123, 319, 560
Bst6I	CTCTTC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	206, 238
BstKTI	GATC	2 cut(s)	381, 504
BstMBI	GATC	2 cut(s)	378, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
BstNI	CCWGG	2 cut(s)	485, 543
BstNSI	RCATGY	2 cut(s)	230, 312
BstSCI	CCNGG	3 cut(s)	438, 483, 541
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	206, 238
BtsIMutI	CAGTG	2 cut(s)	94, 351
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	44, 227, 309
CviJI	RGCY	7 cut(s)	29, 38, 67, 135, 206, 443, 509
CviKI_1	RGCY	7 cut(s)	29, 38, 67, 135, 206, 443, 509
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	2 cut(s)	380, 503
DpnII	GATC	2 cut(s)	378, 501
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	483, 541
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	3 cut(s)	47, 230, 312
FaqI	GGGAC	2 cut(s)	94, 208
FatI	CATG	3 cut(s)	43, 226, 308
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	213, 245
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	213, 300
GluI	GCNGC	1 cut(s)	417
GsaI	CCCAGC	1 cut(s)	67
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	3 cut(s)	47, 230, 312
HinfI	GANTC	2 cut(s)	116, 149
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	2 cut(s)	255, 425
Hpy166II	GTNNAC	3 cut(s)	285, 433, 526
Hpy188I	TCNGA	4 cut(s)	26, 127, 159, 570
Hpy188III	TCNNGA	4 cut(s)	33, 79, 406, 473
Hpy8I	GTNNAC	3 cut(s)	285, 433, 526
HpyAV	CCTTC	2 cut(s)	25, 565
HpyCH4III	ACNGT	3 cut(s)	123, 319, 560
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	2 cut(s)	113, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	47, 230, 312
Kzo9I	GATC	2 cut(s)	378, 501
LmnI	GCTCC	2 cut(s)	64, 515
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	223, 403
MaeI	CTAG	2 cut(s)	213, 300
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	294, 304
MalI	GATC	2 cut(s)	380, 503
MboI	GATC	2 cut(s)	378, 501
MboII	GAAGA	2 cut(s)	10, 376
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	2 cut(s)	354, 476
MnlI	CCTC	3 cut(s)	89, 150, 446
MseI	TTAA	3 cut(s)	168, 222, 534
MslI	CAYNNNNRTG	2 cut(s)	231, 246
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	3 cut(s)	440, 485, 543
MvaI	CCWGG	2 cut(s)	485, 543
MwoI	GCNNNNNNNGC	3 cut(s)	35, 73, 515
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	378, 501
NlaIII	CATG	3 cut(s)	47, 230, 312
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	2 cut(s)	230, 312
PasI	CCCWGGG	1 cut(s)	542
PciI	ACATGT	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	116, 149
PkrI	GCNGC	1 cut(s)	418
PscI	ACATGT	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	483, 541
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	483, 541
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	2 cut(s)	231, 246
SaqAI	TTAA	3 cut(s)	168, 222, 534
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	2 cut(s)	378, 501
ScrFI	CCNGG	3 cut(s)	440, 485, 543
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	2 cut(s)	223, 403
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	231, 246
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	2 cut(s)	354, 476
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	2 cut(s)	213, 300
StyD4I	CCNGG	3 cut(s)	438, 483, 541
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	123, 319, 560
TaiI	ACGT	1 cut(s)	533
TasI	AATT	2 cut(s)	354, 476
TfiI	GAWTC	2 cut(s)	116, 149
Tru1I	TTAA	3 cut(s)	168, 222, 534
Tru9I	TTAA	3 cut(s)	168, 222, 534
TscAI	CASTG	2 cut(s)	94, 351
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	10, 405
TspRI	CASTG	2 cut(s)	94, 351
Vha464I	CTTAAG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	2 cut(s)	230, 312
XspI	CTAG	2 cut(s)	213, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.