Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008111

Physical Location & Seq

Genomic Coordinates Reverse (-)

3891769 .. 3893479

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAAGATTTCGGAATCGTCCAGAAGATTTCTAGACCTTTCCGTGCCAACCCTAGGCTCACCAATATTCTCCTCCTCGTCGCCGTCAGTGGCGGCGGCTATGTGGCTTATGCTCAGGCGAACTCAGACTCTGACCTGATCAGTAGTAGTGCACCTGATGTGGAAAGAAAGAAGGTGGTTGTACTTGGAACTGGGTGGGCTGGAACATCTTTCTTAAGGAGTCTGAAAAATTCTTCATATGATGTTCATGTTGTATCTCCTAGGAATTACTTTGCGTTCACCCCTTTACTACCAAGTGTTACCTGTGGTACCGTGGAGCCTCGGAGCATTGTTGAACCAATTCGTAACATTGTCAGAAAGAAAAAGATTGGCTTTCAATTCACTGAAGCTGAGTGTCTCAAGATTGATGCAAAAGAGAAGAAAGTCTATTGCCGATCTAATCTAGAGAATGGGGAAAAAGAATTTGTTGTGGACTACGACTACCTTGTAATATCTGTGGGAGCAAATGTTAATACATTCAATACTCCTGGTGTGATGGAGAACTGCCATTTCTTGAAGGTGATGTCCTTGGCAACCTTGTATATTCATGTCTTGCAATATGTAAAATTATCTCGTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

207

Amino Acids

23.09

Weight (kDa)

9.23

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	57 - 187	2.1e-19	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008111)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28410 FvH4_4g00590
rosa_chinensis	RchiOBHm_Chr2g0134111 RchiOBHm_Chr5g0002031 RchiOBHm_Chr7g0215551 RchiOBHm_Chr7g0228431
rosa_laevigata	RLG00000019702 RLG00000022667 RLG00000034803
rosa_multiflora	Rmu_sc0039029.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026190 Rroxscaffold_1G00035480 Rroxscaffold_3G00255880 Rroxscaffold_3G00259100 Rroxscaffold_5G00358790 Rroxscaffold_6G00410130
rosa_rugosa	Rorug05G0224200
rosa_samantha	Rh2AG558900 Rh3AG286500 Rh5AG156600 Rh5AG305700 Rh5DG047000 Rh5DG343000
rosa_wichuraiana	Rw5G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	2 cut(s)	93, 96
AcsI	RAATTY	2 cut(s)	229, 461
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	2 cut(s)	183, 310
AfiI	CCNNNNNNNGG	1 cut(s)	54
AflII	CTTAAG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	335, 377, 520, 556
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	150
ApoI	RAATTY	2 cut(s)	229, 461
Asp700I	GAANNNNTTC	2 cut(s)	8, 339
Asp718I	GGTACC	1 cut(s)	308
AspA2I	CCTAGG	2 cut(s)	53, 260
AsuHPI	GGTGA	3 cut(s)	52, 271, 571
AvrII	CCTAGG	2 cut(s)	53, 260
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	4 cut(s)	33, 54, 261, 443
BfrI	CTTAAG	1 cut(s)	214
BisI	GCNGC	2 cut(s)	94, 97
BlnI	CCTAGG	2 cut(s)	53, 260
BlsI	GCNGC	2 cut(s)	95, 98
Bme1390I	CCNGG	1 cut(s)	528
BmiI	GGNNCC	2 cut(s)	310, 318
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	5 cut(s)	53, 260, 312, 320, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	53, 260, 312, 320, 567
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	128, 138, 381
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	62, 65
BseSI	GKGCMC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	138, 434
BspACI	CCGC	2 cut(s)	93, 96
BspCNI	CTCAG	3 cut(s)	127, 137, 382
BspLI	GGNNCC	2 cut(s)	310, 318
BspT107I	GGYRCC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	5 cut(s)	53, 260, 312, 320, 567
BssMI	GATC	2 cut(s)	138, 434
BssT1I	CCWWGG	3 cut(s)	53, 260, 567
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	114, 124, 390
BstDSI	CCRYGG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	141, 437
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	2 cut(s)	138, 434
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	94, 381
CaiI	CAGNNNCTG	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	182, 309
CviAII	CATG	2 cut(s)	248, 587
CviJI	RGCY	7 cut(s)	58, 99, 107, 200, 319, 372, 389
CviKI_1	RGCY	7 cut(s)	58, 99, 107, 200, 319, 372, 389
CviQI	GTAC	2 cut(s)	182, 309
DdeI	CTNAG	3 cut(s)	114, 124, 390
DpnI	GATC	2 cut(s)	140, 436
DpnII	GATC	2 cut(s)	138, 434
Eco130I	CCWWGG	3 cut(s)	53, 260, 567
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	3 cut(s)	53, 260, 567
ErhI	CCWWGG	3 cut(s)	53, 260, 567
FaeI	CATG	2 cut(s)	251, 590
FaiI	YATR	8 cut(s)	102, 111, 238, 240, 249, 582, 588, 600
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	2 cut(s)	247, 586
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	94, 97
Fsp4HI	GCNGC	2 cut(s)	94, 97
FspBI	CTAG	4 cut(s)	33, 54, 261, 443
GluI	GCNGC	2 cut(s)	94, 97
Hin1II	CATG	2 cut(s)	251, 590
HinfI	GANTC	3 cut(s)	15, 128, 220
HphI	GGTGA	3 cut(s)	52, 271, 571
Hpy166II	GTNNAC	3 cut(s)	152, 279, 472
Hpy188I	TCNGA	6 cut(s)	14, 127, 133, 225, 324, 356
Hpy188III	TCNNGA	5 cut(s)	22, 33, 400, 443, 553
Hpy8I	GTNNAC	3 cut(s)	152, 279, 472
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	166, 550
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	152, 410, 595
HpyF3I	CTNAG	3 cut(s)	114, 124, 390
Hsp92II	CATG	2 cut(s)	251, 590
KpnI	GGTACC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 434
LmnI	GCTCC	3 cut(s)	316, 324, 500
LpnPI	CCDG	9 cut(s)	35, 101, 149, 168, 177, 186, 316, 513, 540
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	4 cut(s)	33, 54, 261, 443
MaeIII	GTNAC	2 cut(s)	298, 344
MalI	GATC	2 cut(s)	140, 436
MboI	GATC	2 cut(s)	138, 434
MboII	GAAGA	3 cut(s)	37, 225, 430
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	6 cut(s)	229, 265, 339, 377, 461, 605
MlyI	GAGTC	2 cut(s)	122, 229
MnlI	CCTC	3 cut(s)	83, 86, 330
MroXI	GAANNNNTTC	2 cut(s)	8, 339
MseI	TTAA	2 cut(s)	215, 510
MspCI	CTTAAG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	2 cut(s)	138, 434
NlaIII	CATG	2 cut(s)	251, 590
NlaIV	GGNNCC	2 cut(s)	310, 318
PdmI	GAANNNNTTC	2 cut(s)	8, 339
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	95, 98
PleI	GAGTC	2 cut(s)	122, 228
PpsI	GAGTC	2 cut(s)	122, 228
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	310, 318
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	183, 310
RsaNI	GTAC	2 cut(s)	182, 309
SaqAI	TTAA	2 cut(s)	215, 510
SatI	GCNGC	2 cut(s)	94, 97
Sau3AI	GATC	2 cut(s)	138, 434
SchI	GAGTC	2 cut(s)	122, 229
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	40, 138, 157, 177, 305, 391, 486, 561, 578
SfaNI	GCATC	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	214, 398
SmoI	CTYRAG	2 cut(s)	214, 398
Sse9I	AATT	6 cut(s)	229, 265, 339, 377, 461, 605
SsiI	CCGC	2 cut(s)	93, 96
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	4 cut(s)	33, 54, 261, 443
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	3 cut(s)	53, 260, 567
TaaI	ACNGT	1 cut(s)	313
TasI	AATT	6 cut(s)	229, 265, 339, 377, 461, 605
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	2 cut(s)	96, 99
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	215, 510
Tru9I	TTAA	2 cut(s)	215, 510
TscAI	CASTG	2 cut(s)	94, 388
TspDTI	ATGAA	4 cut(s)	17, 225, 236, 575
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	94, 388
Vha464I	CTTAAG	1 cut(s)	214
VneI	GTGCAC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	229, 461
XbaI	TCTAGA	2 cut(s)	32, 442
XmaJI	CCTAGG	2 cut(s)	53, 260
XmnI	GAANNNNTTC	2 cut(s)	8, 339
XspI	CTAG	4 cut(s)	33, 54, 261, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.