RLG00000035001

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008143
Physical Location & Seq
Reverse (-)
58986135 .. 58986829
695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035001

Sequence Viewer

Length: 489 bp
ATGAAGTTAGCCGGTGATAGGAAGGTTAAGATGACGGGGGGGATTGAGAGTTGGTTAGAGGTTTTGGGATTTTTGCAGCTCGTTACTACATATGAATTGACATCGGCTATGATGCAAATGAGCTTCAAGAAAGCTCCTGATGTCAAAACTAAGAATGTGAAAACTTCTGCAGCAGCAATCTTTTCTTTTCCAAATCTTCAACCAGTTGCCACTGTCCCGTTTAATGCTATTATTGCTATTCAAAATTTTATTAGACAGAAGAAACTATTGAAGGCTTATGGATGCATTTACAAGTTCAAGTTATTAGACAAGTTCCCTCTAGCTCAAGTCTTAAAAGAACATGTTGAGAAGGCCATGAAGTGCATGGAAAATAGCGGGAGAAAGGAAATGCTCCATCAACAGGATCAGGTTGTATACGAAGGAATAGCTTATCTACGACATGATATTGAATGCATCAAACATCACAACGTTGAGTCTGAATACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

163

Amino Acids

18.54

Weight (kDa)

9.28

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 17 - 162 1.5e-13 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AciI CCGC 1 cut(s) 375
AclI AACGTT 1 cut(s) 468
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 18, 400
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 6 cut(s) 127, 200, 242, 271, 298, 449
AluBI AGCT 5 cut(s) 79, 123, 134, 323, 428
AluI AGCT 5 cut(s) 79, 123, 134, 323, 428
AlwI GGATC 1 cut(s) 411
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 76, 170, 173
ApoI RAATTY 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 26
BbvI GCAGC 3 cut(s) 88, 182, 185
BccI CCATC 1 cut(s) 402
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 77, 171, 174
BlsI GCNGC 3 cut(s) 78, 172, 175
BmsI GCATC 3 cut(s) 102, 272, 462
BpuEI CTTGAG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 400
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 18, 400
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 88, 182, 185
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 18, 400
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 1 cut(s) 403
BssNAI GTATAC 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 415
Bst4CI ACNGT 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 88, 182, 185
BstZ17I GTATAC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 11
CviAII CATG 4 cut(s) 341, 355, 364, 440
CviJI RGCY 9 cut(s) 11, 79, 107, 123, 134, 275, 323, 353, 428
CviKI_1 RGCY 9 cut(s) 11, 79, 107, 123, 134, 275, 323, 353, 428
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EcoT22I ATGCAT 2 cut(s) 287, 455
FaeI CATG 4 cut(s) 344, 358, 367, 443
FaiI YATR 9 cut(s) 91, 93, 110, 279, 342, 356, 365, 415, 441
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 340, 354, 363, 439
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 77, 171, 174
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 77, 171, 174
FspBI CTAG 1 cut(s) 320
GluI GCNGC 3 cut(s) 77, 171, 174
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 12
Hin1II CATG 4 cut(s) 344, 358, 367, 443
HinfI GANTC 1 cut(s) 473
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 2 cut(s) 127, 137
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 4 cut(s) 16, 265, 343, 413
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 6 cut(s) 76, 115, 170, 285, 363, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 4 cut(s) 344, 358, 367, 443
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 139, 396
LpnPI CCDG 5 cut(s) 25, 150, 216, 386, 392
Lsp1109I GCAGC 3 cut(s) 88, 182, 185
LweI GCATC 3 cut(s) 102, 272, 462
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 188, 271
MluCI AATT 2 cut(s) 95, 244
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 2 cut(s) 52, 327
Mph1103I ATGCAT 2 cut(s) 287, 455
MseI TTAA 3 cut(s) 27, 222, 332
MspI CCGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 91
NdeII GATC 1 cut(s) 403
NlaIII CATG 4 cut(s) 344, 358, 367, 443
NsiI ATGCAT 2 cut(s) 287, 455
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PctI GAATGC 1 cut(s) 455
PkrI GCNGC 3 cut(s) 78, 172, 175
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 340
Psp1406I AACGTT 1 cut(s) 468
PstI CTGCAG 1 cut(s) 172
SaqAI TTAA 3 cut(s) 27, 222, 332
SatI GCNGC 3 cut(s) 77, 171, 174
Sau3AI GATC 1 cut(s) 403
SchI GAGTC 1 cut(s) 482
SetI ASST 9 cut(s) 27, 63, 81, 125, 136, 325, 411, 430, 471
SfaNI GCATC 3 cut(s) 102, 272, 462
SfcI CTRYAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 2 cut(s) 95, 244
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 471
TasI AATT 2 cut(s) 95, 244
Tru1I TTAA 3 cut(s) 27, 222, 332
Tru9I TTAA 3 cut(s) 27, 222, 332
TscAI CASTG 1 cut(s) 217
TseI GCWGC 3 cut(s) 76, 170, 173
TspDTI ATGAA 3 cut(s) 17, 108, 371
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 320
Zsp2I ATGCAT 2 cut(s) 287, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.