Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008143

Physical Location & Seq

Genomic Coordinates Reverse (-)

59456496 .. 59458091

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG375900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGGAGATGACATTGGATTTGAAGGAATATGAGTTGAAGAAGAACAGTATGAGAAACATGTGCGAGAGCTTGCACTCCCAAGCATCTTCCATGCTAGTCTTCACCCTTCAATGGAAGGACCTCGAGAAACACTTGGATTCGATCTGGGAAGCAAGCCAGACCCGATTCGAAGCGCTCCATGAACGAGAGAAGCAGCTGGATGCCAAAGAGTTAAAGATAGAGTCCAAAGCAAATGAGTTCCAGGAACGAGAGAAGCAGTTAGAGGCCAAAGAGTTAAAGGTGCAGTCCAAAGTGAATGAGTTGCTTGGAATCGAAAAGATGATTGAGGAGAAACAAAAAGACGCTATAGACAGCAAGAACTACTTGAATTCGCTCCAGTCATCAATCAAACAGCATACCGAATTGCTTGGAGAGAAGGAAAGACAAATGGAGAAACGAATTCAAGAATTGAATGCGGTTGAGAGGAATATAGAAGAGAAGTTGAACAAATCTCGTGAGGAACTGAATCTGATTGAGAGGACGATTATGGAACAGGGTGTAGAATTTGATTTGAAAGAAAAGCAAATTAAAGCGAAACAGATGAAATTGAATTGGATTGAGTGGAGTATCGAACAGAAGTTGAAATCCACAACTGAGGAGCAGAAGAAAGCATTTGATGTGAAACAAGAGCGTGTTAAAGAAGAGCAGAAACTGAGAGAGGAGAGACTGAAAGAGGAGGAGAAGTTGAAAGAGCATAAGAAATCAGTAGTGGAAGGCTCTAAGACACTTAAGTCAAGAGAGGAAATAAAGAGGGAAATAGAACTGAAAGTGAAAGATCATTGCTCGCGTAAGATATCACTGGAGCAGTGGTCCTGTAATCTCGAACGCAAAGAGAAAGAATTAGAATTAAAAGAGAAGCAAGTTTTGTTAAAAGCAGAGGAACTTGATTCGCTTAATAAAAGAACCCTCAATGAGTTTCAAAAGCAATTTAGTTCACTCGAAAGTACAATACAAGAACGCGAAAAGCAATTGGAAGCAGACTCCCAGCGACTTCAAGTGAAAGAGAGGCAACTTGAAGTGAAAAGTGAAACACTGGAAAAGTTGCAGCAAGAACGTCAAAAGCAACTTCAAGTACAATGGAAAACTTGCACTACGAACGCGGAAAGCAACTCTAAGCGAAAGAGAGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

391

Amino Acids

46.96

Weight (kDa)

6.7

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008143)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04251
rosa_chinensis	RchiOBHm_Chr3g0452961
rosa_laevigata	RLG00000025558 RLG00000035001 RLG00000035002
rosa_multiflora	Rmu_sc0008989.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024630 Rroxscaffold_6G00429960 Rroxscaffold_6G00430020
rosa_rugosa	Rorug02G0643800 Rorug02G0643800 Rorug02G0643800 Rorug02G0643800 Rorug05G0294400
rosa_samantha	Rh3AG046900 Rh3BG049300 Rh3CG048000 Rh3DG048900 Rh5AG364000 Rh5BG375900 Rh5CG398400 Rh5DG389100
rosa_wichuraiana	Rw3G003680 Rw5G034230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccII	CGCG	3 cut(s)	829, 1002, 1142
AciI	CCGC	2 cut(s)	458, 1142
AcsI	RAATTY	3 cut(s)	370, 441, 545
AfaI	GTAC	2 cut(s)	988, 1116
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	72, 199
AluI	AGCT	2 cut(s)	72, 199
Alw26I	GTCTC	2 cut(s)	700, 1161
AlwNI	CAGNNNCTG	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	196, 1087
ApoI	RAATTY	3 cut(s)	370, 441, 545
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	121, 852
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	121, 852
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	208, 1099
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	700, 1161
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	770
BisI	GCNGC	2 cut(s)	197, 1088
BlsI	GCNGC	2 cut(s)	198, 1089
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	121, 852
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	121, 852
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	95, 193
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	362, 863
Bpu14I	TTCGAA	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	710, 740, 836, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	3 cut(s)	379, 846, 1080
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	2 cut(s)	627, 686
BseNI	ACTGG	3 cut(s)	379, 846, 1080
BseRI	GAGGAG	6 cut(s)	20, 344, 653, 716, 731, 734
BseXI	GCAGC	2 cut(s)	208, 1099
BseYI	CCCAGC	1 cut(s)	1026
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	3 cut(s)	829, 1002, 1142
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	700, 1161
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	144, 817
BspACI	CCGC	2 cut(s)	458, 1142
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	628, 687
BspFNI	CGCG	3 cut(s)	829, 1002, 1142
BspQI	GCTCTTC	1 cut(s)	678
BspT104I	TTCGAA	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	3 cut(s)	379, 846, 1080
BssMI	GATC	2 cut(s)	144, 817
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	50, 1172
Bst6I	CTCTTC	2 cut(s)	471, 678
BstAFI	CTTAAG	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	74, 157, 827
BstDEI	CTNAG	4 cut(s)	636, 695, 762, 1155
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	3 cut(s)	829, 1002, 1142
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	147, 820
BstMAI	GTCTC	2 cut(s)	700, 1161
BstMBI	GATC	2 cut(s)	144, 817
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	3 cut(s)	829, 1002, 1142
BstV1I	GCAGC	2 cut(s)	208, 1099
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	3 cut(s)	839, 854, 1073
Cac8I	GCNNGC	3 cut(s)	74, 157, 827
CaiI	CAGNNNCTG	1 cut(s)	694
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	121, 852
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	987, 1115
CviAII	CATG	3 cut(s)	61, 94, 182
CviJI	RGCY	5 cut(s)	72, 159, 199, 269, 759
CviKI_1	RGCY	5 cut(s)	72, 159, 199, 269, 759
CviQI	GTAC	2 cut(s)	987, 1115
DdeI	CTNAG	4 cut(s)	636, 695, 762, 1155
DpnI	GATC	2 cut(s)	146, 819
DpnII	GATC	2 cut(s)	144, 817
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	2 cut(s)	471, 678
EarI	CTCTTC	2 cut(s)	471, 678
Eco32I	GATATC	1 cut(s)	837
Eco47I	GGWCC	2 cut(s)	121, 852
Eco47III	AGCGCT	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	2 cut(s)	370, 441
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	837
FaeI	CATG	3 cut(s)	64, 97, 185
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	3 cut(s)	60, 93, 181
Fnu4HI	GCNGC	2 cut(s)	197, 1088
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	197, 1088
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	197, 1088
GsaI	CCCAGC	1 cut(s)	1030
GsuI	CTGGAG	2 cut(s)	362, 863
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	269
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	64, 97, 185
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	7 cut(s)	140, 168, 224, 312, 508, 929, 1022
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	977
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	5 cut(s)	127, 446, 497, 777, 863
Hpy8I	GTNNAC	1 cut(s)	977
HpyAV	CCTTC	5 cut(s)	19, 112, 119, 412, 749
HpyCH4III	ACNGT	2 cut(s)	50, 1172
HpyCH4IV	ACGT	1 cut(s)	1096
HpyCH4V	TGCA	4 cut(s)	76, 286, 1087, 1131
HpyF3I	CTNAG	4 cut(s)	636, 695, 762, 1155
HpySE526I	ACGT	1 cut(s)	1096
Hsp92II	CATG	3 cut(s)	64, 97, 185
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	144, 817
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	4 cut(s)	183, 381, 640, 844
Lsp1109I	GCAGC	2 cut(s)	208, 1099
LweI	GCATC	2 cut(s)	95, 193
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	1096
MalI	GATC	2 cut(s)	146, 819
MboI	GATC	2 cut(s)	144, 817
MboII	GAAGA	7 cut(s)	52, 55, 81, 94, 488, 658, 695
MfeI	CAATTG	1 cut(s)	1010
MlyI	GAGTC	2 cut(s)	233, 1016
MseI	TTAA	8 cut(s)	215, 278, 570, 678, 771, 890, 911, 936
MspA1I	CMGCKG	1 cut(s)	199
MspCI	CTTAAG	1 cut(s)	770
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	829, 1002, 1142
NdeII	GATC	2 cut(s)	144, 817
NlaIII	CATG	3 cut(s)	64, 97, 185
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	678
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	5 cut(s)	140, 168, 312, 508, 929
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	198, 1089
PleI	GAGTC	2 cut(s)	232, 1016
PpsI	GAGTC	2 cut(s)	232, 1016
PpuMI	RGGWCCY	1 cut(s)	121
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	1026
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	121, 852
PspPPI	RGGWCCY	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	988, 1116
RsaNI	GTAC	2 cut(s)	987, 1115
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	8 cut(s)	215, 278, 570, 678, 771, 890, 911, 936
SatI	GCNGC	2 cut(s)	197, 1088
Sau3AI	GATC	2 cut(s)	144, 817
Sau96I	GGNCC	2 cut(s)	121, 852
SchI	GAGTC	2 cut(s)	233, 1016
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	5 cut(s)	74, 126, 201, 285, 1099
SfaNI	GCATC	2 cut(s)	95, 193
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	121, 852
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	125, 770
SmoI	CTYRAG	2 cut(s)	125, 770
SsiI	CCGC	2 cut(s)	458, 1142
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	50, 1172
TaiI	ACGT	1 cut(s)	1099
TaqI	TCGA	7 cut(s)	126, 143, 171, 315, 612, 864, 981
TatI	WGTACW	2 cut(s)	986, 1114
TfiI	GAWTC	5 cut(s)	140, 168, 312, 508, 929
Tru1I	TTAA	8 cut(s)	215, 278, 570, 678, 771, 890, 911, 936
Tru9I	TTAA	8 cut(s)	215, 278, 570, 678, 771, 890, 911, 936
TscAI	CASTG	3 cut(s)	846, 854, 1080
TseI	GCWGC	2 cut(s)	196, 1087
TspDTI	ATGAA	2 cut(s)	198, 599
TspRI	CASTG	3 cut(s)	846, 854, 1080
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	121, 852
XapI	RAATTY	3 cut(s)	370, 441, 545
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.