Rroxscaffold_1G00024630

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008143
Physical Location & Seq
Forward (+)
30620971 .. 30622089
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024630.1

Sequence Viewer

Length: 1119 bp
ATGGAGGAGATGACATTGGATTTGAAGGAATATGAGTTGAAGAAGAACAGTATGAGAAACATGTGCGAGAGCTTGCACTCCCAAGCATCTTCCATGCTAGTCTTCACCCTTCAATGGAAGGACCTCGAGAAACACTTGGATTCGATCTGGGAAGCAAGCCAGACCCGATTTGAAGCGCTCCATGAACTAGAGAAGCAGCTGGATGCCAAAGAGTTAAAGATGGAGTCCAGAGCAAATGAGTTCCAGGAACGAGAGAAGCAGCTGGACGCCAAAGAGTTAAAGATGGAGTCCAAAGCAAATGAATTCCAGGAACGAGAGAAGCAGTTGGAGGCCAAAGAGTTAAAGGTGCAGTCCAAAGTGAATGAGTTGCTTGGACTCGAAATGATGATTGAGGAGAAACAAAAAGACGCTATAGACAGCAAGAACTACTTGAATTCGCTCCAGTCATCAATCAAACAGCATACCGAATTGCTTGGAGAGAAGGAAAGACAAATGGAGAAACGAATTCAAGAATTGAATGCGGTTGAGCGGAATATAGAAGAGAAGTTGAACAAATCTCGTGAGCAACTGAATCTGATTGAGAGGACGATTATGGAACAGGGTGTAGAATTTGATTTGAAAGAAAAGCAAATTAAAGCGAAACAGAAGAAATTGAATTGGATTGAGTGGAGTATCGAAGAGAAGTTGAAATCCACAACTGAGGAGCAGAAGAAAGCATTTGATGTGAAACAAGAGCGTGTTAAAGAAGAGCAGAAACTGAGAGAGGAGAGACTGAAAGAGGAGGAGAAGTTGAAAGAGCATAAGAAATCAGTAGTGGAAGGCTCTAAGACAATTAAGTCAAGAGAGGAAATAAAGAGGGAAATAGAACTGAAAGTGAAAGATCATTGCTCGCGTAAGATATCACTGGAGGAGTGGTCCTGTAATCTCGAACGTAAAGAGAAAGAATTAGAATTAAAAGAGAAGCAAGTTTTGTTAAAAGCTGAGGAACTTGATTCGCTTAATAAAAGAACCCTCGATGAGTTTCAAAAGCAATTTAGTTCACTCGAAAGTACAATACAAGAACGCGAAAAGCAATTGGAAGCAGACTCAGCGACTTCAAGTGAAAGAGAGGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

372

Amino Acids

44.49

Weight (kDa)

5.5

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 835
AccBSI CCGCTC 1 cut(s) 529
AccII CGCG 2 cut(s) 892, 1065
AciI CCGC 2 cut(s) 521, 529
AcsI RAATTY 4 cut(s) 302, 433, 504, 608
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 1051
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 60
AjnI CCWGG 2 cut(s) 243, 306
AluBI AGCT 4 cut(s) 72, 199, 262, 980
AluI AGCT 4 cut(s) 72, 199, 262, 980
Alw26I GTCTC 1 cut(s) 763
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 196, 259
ApoI RAATTY 4 cut(s) 302, 433, 504, 608
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 121, 915
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 121, 915
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 208, 271
BccI CCATC 2 cut(s) 214, 277
BciT130I CCWGG 2 cut(s) 245, 308
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 2 cut(s) 98, 188
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 2 cut(s) 197, 260
BlsI GCNGC 2 cut(s) 198, 261
Bme1390I CCNGG 2 cut(s) 245, 308
Bme18I GGWCC 2 cut(s) 121, 915
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 121, 915
BmrFI CCNGG 2 cut(s) 245, 308
BmsI GCATC 2 cut(s) 95, 193
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 2 cut(s) 425, 926
Bpu10I CCTNAGC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 267
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 899, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 442, 909
Bse3DI GCAATG 1 cut(s) 883
BseBI CCWGG 2 cut(s) 245, 308
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 4 cut(s) 690, 749, 972, 1101
BseNI ACTGG 2 cut(s) 442, 909
BseRI GAGGAG 7 cut(s) 20, 407, 716, 779, 794, 797, 923
BseXI GCAGC 2 cut(s) 208, 271
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 2 cut(s) 892, 1065
BshFI GGCC 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 763
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 125
Bsp143I GATC 2 cut(s) 144, 880
BspACI CCGC 2 cut(s) 521, 529
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 4 cut(s) 691, 750, 973, 1100
BspFNI CGCG 2 cut(s) 892, 1065
BspQI GCTCTTC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 883
BsrI ACTGG 2 cut(s) 442, 909
BssMI GATC 2 cut(s) 144, 880
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 245, 308
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 3 cut(s) 534, 672, 741
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 74, 157, 890
BstDEI CTNAG 5 cut(s) 699, 758, 825, 981, 1087
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 892, 1065
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 147, 883
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 2 cut(s) 144, 880
BstMWI GCNNNNNNNGC 1 cut(s) 1088
BstNI CCWGG 2 cut(s) 245, 308
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 243, 306
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 2 cut(s) 892, 1065
BstV1I GCAGC 2 cut(s) 208, 271
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 902
Cac8I GCNNGC 3 cut(s) 74, 157, 890
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 121, 915
CseI GACGC 2 cut(s) 275, 416
Csp6I GTAC 1 cut(s) 1050
CviAII CATG 3 cut(s) 61, 94, 182
CviJI RGCY 7 cut(s) 72, 159, 199, 262, 332, 822, 980
CviKI_1 RGCY 7 cut(s) 72, 159, 199, 262, 332, 822, 980
CviQI GTAC 1 cut(s) 1050
DdeI CTNAG 5 cut(s) 699, 758, 825, 981, 1087
DpnI GATC 2 cut(s) 146, 882
DpnII GATC 2 cut(s) 144, 880
DrdI GACNNNNNNGTC 1 cut(s) 835
DseDI GACNNNNNNGTC 1 cut(s) 835
Eam1104I CTCTTC 3 cut(s) 534, 672, 741
EarI CTCTTC 3 cut(s) 534, 672, 741
Eco32I GATATC 1 cut(s) 900
Eco47I GGWCC 2 cut(s) 121, 915
Eco47III AGCGCT 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 3 cut(s) 302, 433, 504
EcoRII CCWGG 2 cut(s) 243, 306
EcoRV GATATC 1 cut(s) 900
FaeI CATG 3 cut(s) 64, 97, 185
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FatI CATG 3 cut(s) 60, 93, 181
Fnu4HI GCNGC 2 cut(s) 197, 260
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 197, 260
FspBI CTAG 2 cut(s) 98, 188
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 197, 260
GsuI CTGGAG 2 cut(s) 425, 926
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 332
HgaI GACGC 2 cut(s) 275, 416
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 64, 97, 185
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 7 cut(s) 140, 224, 287, 375, 571, 992, 1085
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 1040
Hpy188I TCNGA 1 cut(s) 576
Hpy188III TCNNGA 6 cut(s) 127, 228, 509, 560, 840, 926
Hpy8I GTNNAC 1 cut(s) 1040
HpyAV CCTTC 5 cut(s) 19, 112, 119, 475, 812
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 931
HpyCH4V TGCA 2 cut(s) 76, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 1088
HpyF3I CTNAG 5 cut(s) 699, 758, 825, 981, 1087
HpySE526I ACGT 1 cut(s) 931
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 64, 97, 185
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 144, 880
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 3 cut(s) 183, 444, 703
Lsp1109I GCAGC 2 cut(s) 208, 271
LweI GCATC 2 cut(s) 95, 193
MaeI CTAG 2 cut(s) 98, 188
MaeII ACGT 1 cut(s) 931
MalI GATC 2 cut(s) 146, 882
MbiI CCGCTC 1 cut(s) 529
MboI GATC 2 cut(s) 144, 880
MboII GAAGA 9 cut(s) 52, 55, 81, 94, 551, 658, 689, 721, 758
MfeI CAATTG 1 cut(s) 1073
MlyI GAGTC 4 cut(s) 233, 296, 369, 1079
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 9 cut(s) 215, 278, 341, 633, 741, 834, 953, 974, 999
MspA1I CMGCKG 2 cut(s) 199, 262
MspR9I CCNGG 2 cut(s) 245, 308
MunI CAATTG 1 cut(s) 1073
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 245, 308
MvnI CGCG 2 cut(s) 892, 1065
MwoI GCNNNNNNNGC 1 cut(s) 1088
NdeII GATC 2 cut(s) 144, 880
NlaIII CATG 3 cut(s) 64, 97, 185
NspI RCATGY 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 125
PciI ACATGT 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 741
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 140, 571, 992
PfoI TCCNGGA 2 cut(s) 243, 306
PkrI GCNGC 2 cut(s) 198, 261
PleI GAGTC 4 cut(s) 232, 295, 369, 1079
PpsI GAGTC 4 cut(s) 232, 295, 369, 1079
PpuMI RGGWCCY 1 cut(s) 121
PscI ACATGT 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 243, 306
PspGI CCWGG 2 cut(s) 243, 306
PspPI GGNCC 2 cut(s) 121, 915
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 757
PvuII CAGCTG 2 cut(s) 199, 262
RsaI GTAC 1 cut(s) 1051
RsaNI GTAC 1 cut(s) 1050
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 9 cut(s) 215, 278, 341, 633, 741, 834, 953, 974, 999
SatI GCNGC 2 cut(s) 197, 260
Sau3AI GATC 2 cut(s) 144, 880
Sau96I GGNCC 2 cut(s) 121, 915
SchI GAGTC 4 cut(s) 233, 296, 369, 1079
ScrFI CCNGG 2 cut(s) 245, 308
SetI ASST 7 cut(s) 74, 126, 201, 264, 348, 934, 982
SfaNI GCATC 2 cut(s) 95, 193
SfcI CTRYAG 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 2 cut(s) 121, 915
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 2 cut(s) 521, 529
SspMI CTAG 2 cut(s) 98, 188
StyD4I CCNGG 2 cut(s) 243, 306
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 934
TaqI TCGA 7 cut(s) 126, 143, 378, 675, 927, 1014, 1044
TatI WGTACW 1 cut(s) 1049
TfiI GAWTC 3 cut(s) 140, 571, 992
Tru1I TTAA 9 cut(s) 215, 278, 341, 633, 741, 834, 953, 974, 999
Tru9I TTAA 9 cut(s) 215, 278, 341, 633, 741, 834, 953, 974, 999
TscAI CASTG 1 cut(s) 909
TseI GCWGC 2 cut(s) 196, 259
TspDTI ATGAA 2 cut(s) 198, 315
TspRI CASTG 1 cut(s) 909
VpaK11BI GGWCC 2 cut(s) 121, 915
XapI RAATTY 4 cut(s) 302, 433, 504, 608
XceI RCATGY 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 125
XspI CTAG 2 cut(s) 98, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.