Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008989.1

Orthogroup ID

OG0008143

Physical Location & Seq

Genomic Coordinates Reverse (-)

25480 .. 26721

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008989.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgacattggatttgaaggaatatgagttgaagaagaacagtatgagaaacatgtacgagagcttgcactcccaagcatcttccatgctagtcttcacccttcaatggaaggacctcgagaaacacttggattcgacctgggaagcaagccagacccgattcgaagctcttcatgaacgagagaagcagctggatgccaaagagttaaagatagagtccaaagcaaatgcccaattcgaagcgctccatgaacgagagaagcagctggatgacaaagagttaaagatagagtccaaagcaaatgagttccaggaacgagagaagcagttggaggccaaagagttaaaggtgcagtccaaagtgaatgagttgcttggaatcgaaaagatgattgaggagaaacaaaaagacgctatagacagcaagaactacttgaattcgctccagtcatcaatcaaacagcataccgaattgcttggagagaaggaaagacaaatggaaaaacgaattcaagaattgaatgcggttgagaggaatatagaagagaagttgaacaaatctcgtgaggaactgaatctgattgagaggacgattatggaacagggtgtagaatttgatttgaaagaaaagcaaattaaagcgaaacagaagaaattgaattggattgagtggagtatcgaagagaagttgaaatccacaactgaggagcagaagaaagcatttgatgtgaaacaagagcgtgttaaagaagagcagaaactgagagaggagagactgaaagaggaggagaagttgaaagagcataagaaatcagtagtggaaggctctaagacacttaagtcaagagaggaaataaagagggaaatagaactgaaagtgaaagatcattgctcgcgtaagatatcactggaggagtggtcctgtaatctcgaacgtaaagagaaagaattagaattaaaagagaagcaagttttgttaaaagctgaggaacttgattcgcttaataaaagaaccctcaatgagtttcaaaagcaatttagttcactcgaaagtacaatacaagaacgcgaaaagcaattggaagcagactcccagcgacttcaagtgaaagagaggcaacttgaagtgaaaagtaaaacactggaaaagttgcagcaagaacgtcaaaagcaacttgaagtacaatggaaaacttgcactacgaacgcggaaagcaactctaagcgaaagagagactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

413

Amino Acids

49.57

Weight (kDa)

6.75

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008143)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04251
rosa_chinensis	RchiOBHm_Chr3g0452961
rosa_laevigata	RLG00000025558 RLG00000035001 RLG00000035002
rosa_multiflora	Rmu_sc0008989.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024630 Rroxscaffold_6G00429960 Rroxscaffold_6G00430020
rosa_rugosa	Rorug02G0643800 Rorug02G0643800 Rorug02G0643800 Rorug02G0643800 Rorug05G0294400
rosa_samantha	Rh3AG046900 Rh3BG049300 Rh3CG048000 Rh3DG048900 Rh5AG364000 Rh5BG375900 Rh5CG398400 Rh5DG389100
rosa_wichuraiana	Rw3G003680 Rw5G034230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	838
AccII	CGCG	3 cut(s)	895, 1068, 1208
AciI	CCGC	2 cut(s)	524, 1208
AcsI	RAATTY	3 cut(s)	436, 507, 611
AfaI	GTAC	3 cut(s)	56, 1054, 1182
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflII	CTTAAG	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	137, 309
AluBI	AGCT	5 cut(s)	63, 167, 190, 265, 983
AluI	AGCT	5 cut(s)	63, 167, 190, 265, 983
Alw26I	GTCTC	2 cut(s)	766, 1227
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	187, 262, 1153
ApoI	RAATTY	3 cut(s)	436, 507, 611
ArsI	GACNNNNNNTTYG	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	112, 918
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	2 cut(s)	162, 237
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	112, 918
BauI	CACGAG	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	984
BbvI	GCAGC	3 cut(s)	199, 274, 1165
BciT130I	CCWGG	2 cut(s)	139, 311
BcoDI	GTCTC	2 cut(s)	766, 1227
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	836
BisI	GCNGC	3 cut(s)	188, 263, 1154
BlsI	GCNGC	3 cut(s)	189, 264, 1155
Bme1390I	CCNGG	2 cut(s)	139, 311
Bme18I	GGWCC	2 cut(s)	112, 918
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	112, 918
BmrFI	CCNGG	2 cut(s)	139, 311
BmsI	GCATC	2 cut(s)	86, 184
BpiI	GAAGAC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	428, 929
Bpu10I	CCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	2 cut(s)	162, 237
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 806, 902, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	445, 912, 1146
Bse3DI	GCAATG	1 cut(s)	886
BseBI	CCWGG	2 cut(s)	139, 311
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	199, 274
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	886
BseMII	CTCAG	3 cut(s)	693, 752, 975
BseNI	ACTGG	3 cut(s)	445, 912, 1146
BseRI	GAGGAG	6 cut(s)	410, 719, 782, 797, 800, 926
BseXI	GCAGC	3 cut(s)	199, 274, 1165
BseYI	CCCAGC	1 cut(s)	1092
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	3 cut(s)	895, 1068, 1208
BshFI	GGCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	766, 1227
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	2 cut(s)	162, 237
Bsp143I	GATC	1 cut(s)	883
BspACI	CCGC	2 cut(s)	524, 1208
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	3 cut(s)	694, 753, 976
BspFNI	CGCG	3 cut(s)	895, 1068, 1208
BspHI	TCATGA	1 cut(s)	172
BspQI	GCTCTTC	2 cut(s)	174, 744
BspT104I	TTCGAA	2 cut(s)	162, 237
BspTI	CTTAAG	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	886
BsrI	ACTGG	3 cut(s)	445, 912, 1146
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	883
BssSI	CACGAG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	139, 311
Bst4CI	ACNGT	2 cut(s)	41, 1238
Bst6I	CTCTTC	4 cut(s)	174, 537, 675, 744
BstAFI	CTTAAG	1 cut(s)	836
BstBI	TTCGAA	2 cut(s)	162, 237
BstC8I	GCNNGC	3 cut(s)	65, 148, 893
BstDEI	CTNAG	5 cut(s)	702, 761, 828, 984, 1221
BstF5I	GGATG	2 cut(s)	199, 274
BstFNI	CGCG	3 cut(s)	895, 1068, 1208
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	886
BstMAI	GTCTC	2 cut(s)	766, 1227
BstMBI	GATC	1 cut(s)	883
BstNI	CCWGG	2 cut(s)	139, 311
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	137, 309
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	3 cut(s)	895, 1068, 1208
BstV1I	GCAGC	3 cut(s)	199, 274, 1165
BstV2I	GAAGAC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	199, 274
BtsIMutI	CAGTG	2 cut(s)	905, 1139
Cac8I	GCNNGC	3 cut(s)	65, 148, 893
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	112, 918
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	55, 1053, 1181
CviAII	CATG	4 cut(s)	52, 85, 173, 248
CviJI	RGCY	8 cut(s)	63, 150, 167, 190, 265, 335, 825, 983
CviKI_1	RGCY	8 cut(s)	63, 150, 167, 190, 265, 335, 825, 983
CviQI	GTAC	3 cut(s)	55, 1053, 1181
DdeI	CTNAG	5 cut(s)	702, 761, 828, 984, 1221
DpnI	GATC	1 cut(s)	885
DpnII	GATC	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	838
DseDI	GACNNNNNNGTC	1 cut(s)	838
Eam1104I	CTCTTC	4 cut(s)	174, 537, 675, 744
EarI	CTCTTC	4 cut(s)	174, 537, 675, 744
Eco32I	GATATC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	112, 918
Eco47III	AGCGCT	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRI	GAATTC	2 cut(s)	436, 507
EcoRII	CCWGG	2 cut(s)	137, 309
EcoRV	GATATC	1 cut(s)	903
FaeI	CATG	4 cut(s)	55, 88, 176, 251
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	4 cut(s)	51, 84, 172, 247
Fnu4HI	GCNGC	3 cut(s)	188, 263, 1154
FokI	GGATG	2 cut(s)	206, 281
Fsp4HI	GCNGC	3 cut(s)	188, 263, 1154
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	188, 263, 1154
GsaI	CCCAGC	1 cut(s)	1096
GsuI	CTGGAG	2 cut(s)	428, 929
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	55, 88, 176, 251
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	8 cut(s)	131, 159, 215, 290, 378, 574, 995, 1088
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	1043
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	6 cut(s)	118, 173, 512, 563, 843, 929
Hpy8I	GTNNAC	1 cut(s)	1043
HpyAV	CCTTC	5 cut(s)	10, 103, 110, 478, 815
HpyCH4III	ACNGT	2 cut(s)	41, 1238
HpyCH4IV	ACGT	2 cut(s)	934, 1162
HpyCH4V	TGCA	4 cut(s)	67, 352, 1153, 1197
HpyF3I	CTNAG	5 cut(s)	702, 761, 828, 984, 1221
HpySE526I	ACGT	2 cut(s)	934, 1162
Hsp92II	CATG	4 cut(s)	55, 88, 176, 251
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	883
LguI	GCTCTTC	2 cut(s)	174, 744
LmnI	GCTCC	3 cut(s)	249, 447, 706
Lsp1109I	GCAGC	3 cut(s)	199, 274, 1165
LweI	GCATC	2 cut(s)	86, 184
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	934, 1162
MalI	GATC	1 cut(s)	885
MboI	GATC	1 cut(s)	883
MfeI	CAATTG	1 cut(s)	1076
MlyI	GAGTC	3 cut(s)	224, 299, 1082
MmeI	TCCRAC	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	9 cut(s)	206, 281, 344, 636, 744, 837, 956, 977, 1002
MspA1I	CMGCKG	2 cut(s)	190, 265
MspCI	CTTAAG	1 cut(s)	836
MspR9I	CCNGG	2 cut(s)	139, 311
MunI	CAATTG	1 cut(s)	1076
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	139, 311
MvnI	CGCG	3 cut(s)	895, 1068, 1208
NdeII	GATC	1 cut(s)	883
NlaIII	CATG	4 cut(s)	55, 88, 176, 251
NspI	RCATGY	1 cut(s)	55
NspV	TTCGAA	2 cut(s)	162, 237
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	51
PciSI	GCTCTTC	2 cut(s)	174, 744
PctI	GAATGC	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	5 cut(s)	131, 159, 378, 574, 995
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	189, 264, 1155
PleI	GAGTC	3 cut(s)	223, 298, 1082
PpsI	GAGTC	3 cut(s)	223, 298, 1082
PpuMI	RGGWCCY	1 cut(s)	112
PscI	ACATGT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	137, 309
PspFI	CCCAGC	1 cut(s)	1092
PspGI	CCWGG	2 cut(s)	137, 309
PspPI	GGNCC	2 cut(s)	112, 918
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	760
PvuII	CAGCTG	2 cut(s)	190, 265
RsaI	GTAC	3 cut(s)	56, 1054, 1182
RsaNI	GTAC	3 cut(s)	55, 1053, 1181
SapI	GCTCTTC	2 cut(s)	174, 744
SaqAI	TTAA	9 cut(s)	206, 281, 344, 636, 744, 837, 956, 977, 1002
SatI	GCNGC	3 cut(s)	188, 263, 1154
Sau3AI	GATC	1 cut(s)	883
Sau96I	GGNCC	2 cut(s)	112, 918
SchI	GAGTC	3 cut(s)	224, 299, 1082
ScrFI	CCNGG	2 cut(s)	139, 311
SfaNI	GCATC	2 cut(s)	86, 184
SfcI	CTRYAG	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	2 cut(s)	162, 237
SinI	GGWCC	2 cut(s)	112, 918
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	116, 836
SmoI	CTYRAG	2 cut(s)	116, 836
SsiI	CCGC	2 cut(s)	524, 1208
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	137, 309
TaaI	ACNGT	2 cut(s)	41, 1238
TaiI	ACGT	2 cut(s)	937, 1165
TaqI	TCGA	8 cut(s)	117, 134, 162, 237, 381, 678, 930, 1047
TatI	WGTACW	2 cut(s)	1052, 1180
TfiI	GAWTC	5 cut(s)	131, 159, 378, 574, 995
Tru1I	TTAA	9 cut(s)	206, 281, 344, 636, 744, 837, 956, 977, 1002
Tru9I	TTAA	9 cut(s)	206, 281, 344, 636, 744, 837, 956, 977, 1002
TscAI	CASTG	2 cut(s)	912, 1146
TseI	GCWGC	3 cut(s)	187, 262, 1153
TspDTI	ATGAA	3 cut(s)	161, 189, 264
TspRI	CASTG	2 cut(s)	912, 1146
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	112, 918
XapI	RAATTY	3 cut(s)	436, 507, 611
XceI	RCATGY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.