RLG00000035002

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008143
Physical Location & Seq
Reverse (-)
59013429 .. 59018010
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035002

Sequence Viewer

Length: 1653 bp
ATGGGGAGAGAGGTCTCAGAGAGCTGCGTAGATAGTCTACTCACAGACATGGTCTCCATGTACTGCAATTGCTTACACGCCAATAAGCCCGAGCTTGTTGCCTGCAGGGTCGACGCTACTGGCTACCAGGTCGGTCACCAGCTCTCCGAGAGGTATTCAAGGTGTGGTCTGACAGACAACTTGAAGACCAACCATAGGATTCGGTGGCTTTCACGCATGTCTCTTCATCCGTCCGCTGAAAATGGAGATGTATCTCAAGAAAATTCTGAGGCCTCGGCTGAAAACAAGGCAGCACAGGTACCAAACATGCATCTCCATTTCTCTTGTGGGGTCATTAAAGGGGCCTTTCATAACTTGGGGATTGCTTGTGCTGTTTCTGCGGACACATCCCATCTCCCTGCATTCGGTAACCAAGTGTTGTGGTTTTTTTTTTTCCTCACCTCCAAGCAGAATATAATGGAGGAGATGACATTGGATTTGAAGGAATATGAGTTGAAGAAGAACAGTATGAGAAACATGTACGAGAGCTTGCACTCCCAAGCATCTTCCATGCTAGTCTTCACCCTTCAATGGAAGGACCTCGAGAAACACTTGGATTCGATCTGGGATGCAAGCCAGACCCGATTTGAAGCGCTCCATGAACGAGAGAAGCAGCTGGATGCCAAAGAGTTAAAGATGGAGTCCAAAGCAAATGAGTTCCAGGAACGAGAGAAGCAGTTGGACGCCAAAGAGTTAAAGGTGCAGTCCAAAGTGAATGAGTTGCTTGGACTCGAAAAGATGATTGAGGAGAAACAAAAAGACGCTATAGACAGCAAGAACTACTTGAATTCGCTCCAGTCATCAATCAAACAGCATACCGAATTGCTTGGAGAGAAGGAAAGACAAATGGAGAAACGAATTCAAGAATTGAATGGGGTTGAGAGGAATATAGAAGAGAAGTTGAACAAATCTCGTGAGGAACTGAATCTGATTAAGAGGACGATTATGGAACAGGGTGTAGAATTTGATTTGAAAGAAAAGCAAATTAAAGCGAAACACAAGAAATTGAATTGGATTGAGTGGAGTATCGAAGAGAAGTTGAAATTGGCAATTGAGGAGCAGAAGAAAGCATTTGATGTGAAACAAGAGCGTGTTAAAGAAGAGCAGAAACTGAGAGAGGAGAGAATGAAAGAGGAGGAGAAGTTGAAAGAGCATAAGAAATCATTAGTTGAAGGCTCTAAGACACTCAAGTCAAGAGAGGAAATAAAGAGGGAAATAGAACTGAAAGTGAAAGATCATTGCTCGCGTAGGATATCGCTGGAGGAGTGGTCCTGTAATCTCGAGCGTAAAGAGAAAGAATTAGAATTAAAAGAGAAGCAAGTTTTGTTAAAAGCTGAGGAACTTGATTCGCTTAATAAAAGAACCCTCAATGAGTTTCAAAAGCAATTTAGTTCACTCGAAAGTACAATACAAGAACGTGAAAAGCAATTGGAAGCAGACTCCCAGCGACTTCAAGTGAAAGAGAGGCAACTTGAAGTGAAAAGTGAAACAATGGAAAAGTTGCAGCAAGAATGTGAAAAGCAACTTGAAGCGAAAGAGAGACAACTTGAAGTACAATGGAAAAATTGCATCACGAACGCGAAAAGCAACTCTAAGCGAAAGAGAGACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

551

Amino Acids

64.72

Weight (kDa)

6.62

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 12 - 133 5.3e-07 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1228
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AccI GTMKAC 2 cut(s) 37, 111
AccII CGCG 2 cut(s) 1285, 1619
AciI CCGC 2 cut(s) 234, 380
AcsI RAATTY 4 cut(s) 262, 826, 897, 1001
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 5 cut(s) 62, 300, 521, 1444, 1593
AfeI AGCGCT 1 cut(s) 633
AfiI CCNNNNNNNGG 3 cut(s) 195, 404, 570
AflIII ACRYGT 1 cut(s) 516
AjnI CCWGG 2 cut(s) 126, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AluBI AGCT 6 cut(s) 24, 94, 142, 528, 655, 1373
AluI AGCT 6 cut(s) 24, 94, 142, 528, 655, 1373
Alw26I GTCTC 5 cut(s) 19, 58, 225, 1573, 1638
AlwNI CAGNNNCTG 1 cut(s) 1150
Ama87I CYCGRG 3 cut(s) 89, 581, 1319
Aor51HI AGCGCT 1 cut(s) 633
AoxI GGCC 2 cut(s) 270, 342
ApeKI GCWGC 4 cut(s) 24, 290, 652, 1543
ApoI RAATTY 4 cut(s) 262, 826, 897, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 3 cut(s) 342, 577, 1308
AsuHPI GGTGA 3 cut(s) 128, 430, 553
AvaI CYCGRG 3 cut(s) 89, 581, 1319
AvaII GGWCC 2 cut(s) 577, 1308
BanI GGYRCC 1 cut(s) 298
BauI CACGAG 1 cut(s) 951
BbsI GAAGAC 2 cut(s) 191, 550
BbvCI CCTCAGC 1 cut(s) 1374
BbvI GCAGC 4 cut(s) 11, 302, 664, 1555
BccI CCATC 2 cut(s) 399, 670
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 128, 701
BcoDI GTCTC 5 cut(s) 19, 58, 225, 1573, 1638
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 2 cut(s) 103, 804
BfoI RGCGCY 1 cut(s) 635
BisI GCNGC 4 cut(s) 25, 291, 653, 1544
BlsI GCNGC 4 cut(s) 26, 292, 654, 1545
Bme1390I CCNGG 2 cut(s) 128, 701
Bme18I GGWCC 2 cut(s) 577, 1308
BmeT110I CYCGRG 3 cut(s) 89, 581, 1319
BmgT120I GGNCC 3 cut(s) 342, 577, 1308
BmiI GGNNCC 2 cut(s) 300, 343
BmrFI CCNGG 2 cut(s) 128, 701
BmsI GCATC 5 cut(s) 319, 551, 598, 649, 1617
BpiI GAAGAC 2 cut(s) 191, 550
BpmI CTGGAG 2 cut(s) 818, 1319
Bpu10I CCTNAGC 1 cut(s) 1374
BpuEI CTTGAG 2 cut(s) 240, 1211
BsaHI GRCGYC 1 cut(s) 723
BsaI GGTCTC 2 cut(s) 19, 58
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 8 cut(s) 38, 68, 128, 158, 1166, 1196, 1292, 1322
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 404, 570
Bse1I ACTGG 2 cut(s) 124, 835
Bse3DI GCAATG 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 128, 701
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 4 cut(s) 226, 386, 613, 664
BseLI CCNNNNNNNGG 3 cut(s) 195, 404, 570
BseMI GCAATG 1 cut(s) 1276
BseMII CTCAG 4 cut(s) 30, 258, 1142, 1365
BseNI ACTGG 2 cut(s) 124, 835
BseRI GAGGAG 7 cut(s) 476, 800, 1109, 1172, 1187, 1190, 1316
BseXI GCAGC 4 cut(s) 11, 302, 664, 1555
BseYI CCCAGC 1 cut(s) 1482
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 2 cut(s) 1285, 1619
BshFI GGCC 2 cut(s) 272, 344
BshNI GGYRCC 1 cut(s) 298
BsiHKCI CYCGRG 3 cut(s) 89, 581, 1319
BslI CCNNNNNNNGG 3 cut(s) 195, 404, 570
BsmAI GTCTC 5 cut(s) 19, 58, 225, 1573, 1638
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 2 cut(s) 272, 344
Bso31I GGTCTC 2 cut(s) 19, 58
BsoBI CYCGRG 3 cut(s) 89, 581, 1319
Bsp143I GATC 2 cut(s) 600, 1273
BspACI CCGC 2 cut(s) 234, 380
BspANI GGCC 2 cut(s) 272, 344
BspCNI CTCAG 4 cut(s) 29, 259, 1143, 1366
BspFNI CGCG 2 cut(s) 1285, 1619
BspLI GGNNCC 2 cut(s) 300, 343
BspMAI CTGCAG 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 1134
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 2 cut(s) 19, 58
BsrDI GCAATG 1 cut(s) 1276
BsrI ACTGG 2 cut(s) 124, 835
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 600, 1273
BssNI GRCGYC 1 cut(s) 723
BssSI CACGAG 1 cut(s) 951
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 2 cut(s) 128, 701
Bst4CI ACNGT 2 cut(s) 506, 1649
Bst6I CTCTTC 4 cut(s) 228, 927, 1065, 1134
BstACI GRCGYC 1 cut(s) 723
BstC8I GCNNGC 4 cut(s) 103, 530, 613, 1283
BstDEI CTNAG 6 cut(s) 16, 267, 1151, 1218, 1374, 1632
BstEII GGTNACC 2 cut(s) 134, 407
BstF5I GGATG 4 cut(s) 226, 386, 613, 664
BstFNI CGCG 2 cut(s) 1285, 1619
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 2 cut(s) 603, 1276
BstMAI GTCTC 5 cut(s) 19, 58, 225, 1573, 1638
BstMBI GATC 2 cut(s) 600, 1273
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 2 cut(s) 128, 701
BstNSI RCATGY 3 cut(s) 220, 310, 520
BstPI GGTNACC 2 cut(s) 134, 407
BstSCI CCNGG 2 cut(s) 126, 699
BstSFI CTRYAG 2 cut(s) 103, 804
BstUI CGCG 2 cut(s) 1285, 1619
BstV1I GCAGC 4 cut(s) 11, 302, 664, 1555
BstV2I GAAGAC 2 cut(s) 191, 550
BsuRI GGCC 2 cut(s) 272, 344
BtsCI GGATG 4 cut(s) 226, 386, 613, 664
Cac8I GCNNGC 4 cut(s) 103, 530, 613, 1283
CaiI CAGNNNCTG 1 cut(s) 1150
CfoI GCGC 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 342, 577, 1308
CseI GACGC 3 cut(s) 122, 731, 809
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 5 cut(s) 61, 299, 520, 1443, 1592
CspCI CAANNNNNGTGG 2 cut(s) 401, 436
CviAII CATG 7 cut(s) 49, 58, 217, 307, 517, 550, 638
CviQI GTAC 5 cut(s) 61, 299, 520, 1443, 1592
DdeI CTNAG 6 cut(s) 16, 267, 1151, 1218, 1374, 1632
DpnI GATC 2 cut(s) 602, 1275
DpnII GATC 2 cut(s) 600, 1273
DrdI GACNNNNNNGTC 1 cut(s) 1228
DseDI GACNNNNNNGTC 1 cut(s) 1228
Eam1104I CTCTTC 4 cut(s) 228, 927, 1065, 1134
EarI CTCTTC 4 cut(s) 228, 927, 1065, 1134
Eco147I AGGCCT 1 cut(s) 272
Eco31I GGTCTC 2 cut(s) 19, 58
Eco32I GATATC 1 cut(s) 1293
Eco47I GGWCC 2 cut(s) 577, 1308
Eco47III AGCGCT 1 cut(s) 633
Eco88I CYCGRG 3 cut(s) 89, 581, 1319
Eco91I GGTNACC 2 cut(s) 134, 407
EcoO109I RGGNCCY 2 cut(s) 342, 577
EcoO65I GGTNACC 2 cut(s) 134, 407
EcoRI GAATTC 2 cut(s) 826, 897
EcoRII CCWGG 2 cut(s) 126, 699
EcoRV GATATC 1 cut(s) 1293
EcoT22I ATGCAT 1 cut(s) 312
FaeI CATG 7 cut(s) 52, 61, 220, 310, 520, 553, 641
FalI AAGNNNNNCTT 2 cut(s) 806, 838
FatI CATG 7 cut(s) 48, 57, 216, 306, 516, 549, 637
FblI GTMKAC 2 cut(s) 37, 111
Fnu4HI GCNGC 4 cut(s) 25, 291, 653, 1544
FokI GGATG 4 cut(s) 213, 373, 620, 671
Fsp4HI GCNGC 4 cut(s) 25, 291, 653, 1544
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 633
GluI GCNGC 4 cut(s) 25, 291, 653, 1544
GsaI CCCAGC 1 cut(s) 1486
GsuI CTGGAG 2 cut(s) 818, 1319
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 2 cut(s) 272, 344
HgaI GACGC 3 cut(s) 122, 731, 809
HhaI GCGC 1 cut(s) 634
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 7 cut(s) 52, 61, 220, 310, 520, 553, 641
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 7 cut(s) 199, 596, 680, 768, 964, 1385, 1478
HphI GGTGA 3 cut(s) 128, 430, 553
Hpy166II GTNNAC 3 cut(s) 38, 112, 1433
Hpy188I TCNGA 5 cut(s) 19, 148, 171, 268, 969
Hpy188III TCNNGA 7 cut(s) 257, 583, 902, 953, 1233, 1319, 1612
Hpy8I GTNNAC 3 cut(s) 38, 112, 1433
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 5 cut(s) 475, 568, 575, 868, 1205
HpyCH4III ACNGT 2 cut(s) 506, 1649
HpyCH4IV ACGT 1 cut(s) 1456
HpyCH4V TGCA 9 cut(s) 66, 105, 310, 401, 532, 611, 742, 1543, 1608
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 6 cut(s) 16, 267, 1151, 1218, 1374, 1632
HpySE526I ACGT 1 cut(s) 1456
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 7 cut(s) 52, 61, 220, 310, 520, 553, 641
HspAI GCGC 1 cut(s) 632
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 600, 1273
LguI GCTCTTC 1 cut(s) 1134
LmnI GCTCC 3 cut(s) 639, 837, 1096
Lsp1109I GCAGC 4 cut(s) 11, 302, 664, 1555
LweI GCATC 5 cut(s) 319, 551, 598, 649, 1617
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 1 cut(s) 554
MaeII ACGT 1 cut(s) 1456
MaeIII GTNAC 2 cut(s) 134, 407
MalI GATC 2 cut(s) 602, 1275
MboI GATC 2 cut(s) 600, 1273
MfeI CAATTG 3 cut(s) 67, 1089, 1466
MlyI GAGTC 3 cut(s) 689, 762, 1472
MmeI TCCRAC 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 312
MseI TTAA 9 cut(s) 336, 671, 734, 972, 1026, 1134, 1346, 1367, 1392
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 236, 655
MspR9I CCNGG 2 cut(s) 128, 701
MunI CAATTG 3 cut(s) 67, 1089, 1466
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 2 cut(s) 128, 701
MvnI CGCG 2 cut(s) 1285, 1619
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 600, 1273
NlaIII CATG 7 cut(s) 52, 61, 220, 310, 520, 553, 641
NlaIV GGNNCC 2 cut(s) 300, 343
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 3 cut(s) 220, 310, 520
PaeR7I CTCGAG 2 cut(s) 581, 1319
PceI AGGCCT 1 cut(s) 272
PciI ACATGT 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 1134
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 4 cut(s) 199, 596, 964, 1385
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 4 cut(s) 26, 292, 654, 1545
PleI GAGTC 3 cut(s) 688, 762, 1472
PpsI GAGTC 3 cut(s) 688, 762, 1472
PpuMI RGGWCCY 1 cut(s) 577
PscI ACATGT 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 126, 699
PspEI GGTNACC 2 cut(s) 134, 407
PspFI CCCAGC 1 cut(s) 1482
PspGI CCWGG 2 cut(s) 126, 699
PspN4I GGNNCC 2 cut(s) 300, 343
PspPI GGNCC 3 cut(s) 342, 577, 1308
PspPPI RGGWCCY 1 cut(s) 577
PstI CTGCAG 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 1150
PsyI GACNNNGTC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 5 cut(s) 62, 300, 521, 1444, 1593
RsaNI GTAC 5 cut(s) 61, 299, 520, 1443, 1592
RseI CAYNNNNRTG 1 cut(s) 47
SalI GTCGAC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 1134
SaqAI TTAA 9 cut(s) 336, 671, 734, 972, 1026, 1134, 1346, 1367, 1392
SatI GCNGC 4 cut(s) 25, 291, 653, 1544
Sau3AI GATC 2 cut(s) 600, 1273
Sau96I GGNCC 3 cut(s) 342, 577, 1308
SbfI CCTGCAGG 1 cut(s) 107
SchI GAGTC 3 cut(s) 689, 762, 1472
ScrFI CCNGG 2 cut(s) 128, 701
SdaI CCTGCAGG 1 cut(s) 107
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 5 cut(s) 319, 551, 598, 649, 1617
SfcI CTRYAG 2 cut(s) 103, 804
Sfr274I CTCGAG 2 cut(s) 581, 1319
SinI GGWCC 2 cut(s) 577, 1308
SlaI CTCGAG 2 cut(s) 581, 1319
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 4 cut(s) 255, 581, 1226, 1319
SmoI CTYRAG 4 cut(s) 255, 581, 1226, 1319
Sse8387I CCTGCAGG 1 cut(s) 107
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 2 cut(s) 234, 380
SspMI CTAG 1 cut(s) 554
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 126, 699
TaaI ACNGT 2 cut(s) 506, 1649
TaiI ACGT 1 cut(s) 1459
TaqI TCGA 7 cut(s) 111, 582, 599, 771, 1068, 1320, 1437
TaqII GACCGA 1 cut(s) 122
TatI WGTACW 3 cut(s) 60, 1442, 1591
TfiI GAWTC 4 cut(s) 199, 596, 964, 1385
Tru1I TTAA 9 cut(s) 336, 671, 734, 972, 1026, 1134, 1346, 1367, 1392
Tru9I TTAA 9 cut(s) 336, 671, 734, 972, 1026, 1134, 1346, 1367, 1392
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 4 cut(s) 24, 290, 652, 1543
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 215, 338, 654, 1181
TspGWI ACGGA 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 577, 1308
XapI RAATTY 4 cut(s) 262, 826, 897, 1001
XceI RCATGY 3 cut(s) 220, 310, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XhoI CTCGAG 2 cut(s) 581, 1319
XmiI GTMKAC 2 cut(s) 37, 111
XspI CTAG 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.