RLG00000035741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018247
Physical Location & Seq
Reverse (-)
71120549 .. 71121715
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035741

Sequence Viewer

Length: 765 bp
ATGAAAGCTAGTTACAGGGGAAACCACTCTGAAAAATCAAAAATGAGAAATAAAACCCTAGAGAGTAAGCGCCGTGCGCGAGTGAGTTCTACGTGGGTTTCCTTCCTCGTCCAGCGGCCCGTCCCTGAGACGTTGTCGTCGGACGGGTCTGTCAGACTGTGGGGCTTGGTGAGACCTCTAGGCTTGGACGGAGACGGGGTTGAAACGGTATGTGGCTGGCATGTTGTAATCCAGATCCGAATTGATCTGGTTACTAGGAGGTTCCGGTGGTTGGCTGGGTTGCCCGGCGGTGCAGGTGCTTACGATGAGTGTGATCCTGAATTCGGAGAAAGGGCGGCATGGGGATCTGATGGGGATGAGGCGGGTTGTCCAATTGGACTTTCCGGTTATCTTCTGGGTCCGATTGGGTGGTCGGATGTGAAGAAGGAGGCGTCTGATGGTGGCTCCGGTAATGGGTTTACGGTTTGGCCATCGGAAAGCTGCTTTCATGGTGCCCAGGCAGAGGTGTGGGCGGCTGGGGTTGGAAGGAATTCTAGATCCTATCTGGATCGGGTCTGCCTTCTGGGAGGCTTACCTGTGTACGCTGGGGTGACTGATCGGTGGTGGCAACAAGGGGCGACGGCGACGGCGGTGCTGCTGCGTGGTTGGTGGTGCGTGTCTGCTATTGTTCTGCGTCACCTGGAGGATGGGCTTAGGGTTTTTGGGCTGCTGCTGTTTGGACCATTTTCTTGCGCTAGGGCTATGGGTCTCTACTACTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

27.66

Weight (kDa)

8.48

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 284
AasI GACNNNNNNGTC 2 cut(s) 136, 149
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 491
AccII CGCG 1 cut(s) 79
AciI CCGC 6 cut(s) 115, 288, 335, 362, 512, 629
AclWI GGATC 5 cut(s) 229, 308, 352, 531, 555
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 2 cut(s) 320, 529
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 4 cut(s) 271, 323, 453, 502
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 2 cut(s) 495, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 2 cut(s) 8, 480
AluI AGCT 2 cut(s) 8, 480
Alw26I GTCTC 4 cut(s) 122, 166, 186, 752
AlwI GGATC 5 cut(s) 229, 308, 352, 531, 555
AoxI GGCC 2 cut(s) 116, 467
ApeKI GCWGC 5 cut(s) 480, 634, 637, 706, 709
ApoI RAATTY 2 cut(s) 320, 529
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 3 cut(s) 72, 79, 734
AspS9I GGNCC 3 cut(s) 117, 398, 719
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 181, 601, 668
AvaII GGWCC 2 cut(s) 398, 719
BaeGI GKGCMC 1 cut(s) 496
BalI TGGCCA 1 cut(s) 469
BanI GGYRCC 1 cut(s) 491
BbvI GCAGC 5 cut(s) 467, 621, 624, 693, 696
BccI CCATC 4 cut(s) 344, 431, 478, 680
BceAI ACGGC 3 cut(s) 57, 636, 642
BcgI CGANNNNNNTGC 2 cut(s) 613, 647
BciT130I CCWGG 2 cut(s) 497, 680
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 4 cut(s) 122, 166, 186, 752
BfaI CTAG 7 cut(s) 9, 59, 179, 255, 534, 735, 763
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 8 cut(s) 116, 336, 481, 513, 635, 638, 707, 710
BlsI GCNGC 8 cut(s) 117, 337, 482, 514, 636, 639, 708, 711
Bme1390I CCNGG 3 cut(s) 285, 497, 680
Bme18I GGWCC 2 cut(s) 398, 719
BmgT120I GGNCC 3 cut(s) 117, 398, 719
BmiI GGNNCC 4 cut(s) 263, 399, 445, 493
BmrFI CCNGG 3 cut(s) 285, 497, 680
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 1 cut(s) 692
BpuMI CCSGG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 2 cut(s) 166, 752
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 3 cut(s) 264, 383, 446
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 323, 453, 502
BseBI CCWGG 2 cut(s) 497, 680
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 361, 421, 691
BseLI CCNNNNNNNGG 4 cut(s) 271, 323, 453, 502
BseMII CTCAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 5 cut(s) 467, 621, 624, 693, 696
BseYI CCCAGC 3 cut(s) 275, 515, 584
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 2 cut(s) 118, 469
BshNI GGYRCC 1 cut(s) 491
BsiSI CCGG 4 cut(s) 265, 285, 384, 447
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 4 cut(s) 271, 323, 453, 502
BsmAI GTCTC 4 cut(s) 122, 166, 186, 752
BsmBI CGTCTC 2 cut(s) 122, 186
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 118, 469
Bso31I GGTCTC 2 cut(s) 166, 752
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
BspACI CCGC 6 cut(s) 115, 288, 335, 362, 512, 629
BspANI GGCC 2 cut(s) 118, 469
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 263, 399, 445, 493
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 5 cut(s) 229, 308, 352, 531, 555
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 2 cut(s) 166, 752
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
BssNI GRCGYC 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 497, 680
Bst4CI ACNGT 3 cut(s) 159, 208, 463
BstACI GRCGYC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 126, 692
BstF5I GGATG 3 cut(s) 361, 421, 691
BstFNI CGCG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 3 cut(s) 72, 79, 734
BstKTI GATC 7 cut(s) 237, 247, 316, 347, 539, 550, 598
BstMAI GTCTC 4 cut(s) 122, 166, 186, 752
BstMBI GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 497, 680
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 283, 495, 678
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 5 cut(s) 467, 621, 624, 693, 696
BstX2I RGATCY 3 cut(s) 234, 344, 536
BstYI RGATCY 3 cut(s) 234, 344, 536
BsuRI GGCC 2 cut(s) 118, 469
BtsCI GGATG 3 cut(s) 361, 421, 691
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 3 cut(s) 72, 79, 734
Cfr13I GGNCC 3 cut(s) 117, 398, 719
CseI GACGC 2 cut(s) 420, 662
Csp6I GTAC 1 cut(s) 580
CviAII CATG 3 cut(s) 221, 339, 488
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 126, 692
DpnI GATC 7 cut(s) 236, 246, 315, 346, 538, 549, 597
DpnII GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
DrdI GACNNNNNNGTC 2 cut(s) 136, 149
DseDI GACNNNNNNGTC 2 cut(s) 136, 149
EaeI YGGCCR 1 cut(s) 467
Eco31I GGTCTC 2 cut(s) 166, 752
Eco47I GGWCC 2 cut(s) 398, 719
EcoRI GAATTC 2 cut(s) 320, 529
EcoRII CCWGG 2 cut(s) 495, 678
Esp3I CGTCTC 2 cut(s) 122, 186
FaeI CATG 3 cut(s) 224, 342, 491
FaiI YATR 5 cut(s) 211, 222, 340, 489, 743
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 220, 338, 487
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 8 cut(s) 116, 336, 481, 513, 635, 638, 707, 710
FokI GGATG 3 cut(s) 368, 428, 698
Fsp4HI GCNGC 8 cut(s) 116, 336, 481, 513, 635, 638, 707, 710
FspBI CTAG 7 cut(s) 9, 59, 179, 255, 534, 735, 763
GlaI GCGC 3 cut(s) 71, 78, 733
GluI GCNGC 8 cut(s) 116, 336, 481, 513, 635, 638, 707, 710
GsaI CCCAGC 3 cut(s) 279, 519, 588
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 118, 469
HapII CCGG 4 cut(s) 265, 285, 384, 447
HgaI GACGC 2 cut(s) 420, 662
HhaI GCGC 3 cut(s) 72, 79, 734
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 3 cut(s) 224, 342, 491
Hin6I GCGC 3 cut(s) 70, 77, 732
HinP1I GCGC 3 cut(s) 70, 77, 732
HpaII CCGG 4 cut(s) 265, 285, 384, 447
HphI GGTGA 3 cut(s) 181, 601, 668
Hpy166II GTNNAC 2 cut(s) 459, 580
Hpy188III TCNNGA 4 cut(s) 232, 317, 534, 545
Hpy8I GTNNAC 2 cut(s) 459, 580
Hpy99I CGWCG 3 cut(s) 142, 622, 628
HpyAV CCTTC 4 cut(s) 112, 418, 519, 569
HpyCH4III ACNGT 3 cut(s) 159, 208, 463
HpyCH4IV ACGT 2 cut(s) 92, 131
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 126, 692
HpySE526I ACGT 2 cut(s) 92, 131
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 3 cut(s) 224, 342, 491
HspAI GCGC 3 cut(s) 70, 77, 732
Kzo9I GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 5 cut(s) 467, 621, 624, 693, 696
MaeI CTAG 7 cut(s) 9, 59, 179, 255, 534, 735, 763
MaeII ACGT 2 cut(s) 92, 131
MaeIII GTNAC 4 cut(s) 11, 250, 589, 674
MalI GATC 7 cut(s) 236, 246, 315, 346, 538, 549, 597
MboI GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
MboII GAAGA 2 cut(s) 383, 433
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 3 cut(s) 234, 344, 536
MhlI GDGCHC 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 4 cut(s) 240, 320, 372, 529
MluNI TGGCCA 1 cut(s) 469
MmeI TCCRAC 3 cut(s) 120, 393, 502
MnlI CCTC 8 cut(s) 116, 186, 252, 352, 421, 496, 560, 676
Mox20I TGGCCA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 469
Msp20I TGGCCA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 4 cut(s) 265, 285, 384, 447
MspR9I CCNGG 3 cut(s) 285, 497, 680
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 2 cut(s) 497, 680
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 285
NdeII GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
NlaIII CATG 3 cut(s) 224, 342, 491
NlaIV GGNNCC 4 cut(s) 263, 399, 445, 493
NmuCI GTSAC 2 cut(s) 589, 674
NspI RCATGY 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 529
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 8 cut(s) 117, 337, 482, 514, 636, 639, 708, 711
Ppu21I YACGTR 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 495, 678
PspFI CCCAGC 3 cut(s) 275, 515, 584
PspGI CCWGG 2 cut(s) 495, 678
PspN4I GGNNCC 4 cut(s) 263, 399, 445, 493
PspPI GGNCC 3 cut(s) 117, 398, 719
PsuI RGATCY 3 cut(s) 234, 344, 536
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SatI GCNGC 8 cut(s) 116, 336, 481, 513, 635, 638, 707, 710
Sau3AI GATC 7 cut(s) 234, 244, 313, 344, 536, 547, 595
Sau96I GGNCC 3 cut(s) 117, 398, 719
ScrFI CCNGG 3 cut(s) 285, 497, 680
SduI GDGCHC 1 cut(s) 496
SinI GGWCC 2 cut(s) 398, 719
Sse9I AATT 4 cut(s) 240, 320, 372, 529
SsiI CCGC 6 cut(s) 115, 288, 335, 362, 512, 629
SspMI CTAG 7 cut(s) 9, 59, 179, 255, 534, 735, 763
StyD4I CCNGG 3 cut(s) 283, 495, 678
TaaI ACNGT 3 cut(s) 159, 208, 463
TaiI ACGT 2 cut(s) 95, 134
TasI AATT 4 cut(s) 240, 320, 372, 529
TauI GCSGC 3 cut(s) 118, 338, 515
TseFI GTSAC 2 cut(s) 589, 674
TseI GCWGC 5 cut(s) 480, 634, 637, 706, 709
Tsp45I GTSAC 2 cut(s) 589, 674
TspDTI ATGAA 2 cut(s) 17, 476
TspGWI ACGGA 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 398, 719
XapI RAATTY 2 cut(s) 320, 529
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 529
XspI CTAG 7 cut(s) 9, 59, 179, 255, 534, 735, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.