Rh2BG309400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018247
Physical Location & Seq
Reverse (-)
36128788 .. 36129186
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG309400.1

Sequence Viewer

Length: 399 bp
ATGGTATGTGGCTGGCATGTTGTAATCCATATCCTAATTGATCTGGTTACTAGGAGGTTCCGGTGGTTGGCTGGGTTGCCAGGCGGTGCAGGTGCTTACGAGGAGTGTGATCCTGGATTCGGAGAAAGGGCGGCATGGGCATCGGATGGGGATGAGGCGGGTTGTCCAATTGGACTTCCCGATTATCTTCTGGGTCCGATTGGGTGGTCAGATGTGAAGAAGGAGGCGTTTCATGGTTGCTCCGGTAATGGGTTTACGGTTTGGTCATCGGAAAGCTGCTTTCATGGTGCGCAGGGGGAGCTGTGGGCGGCTGGGGCTGGAAGGAATTCCAGATCCGATCTGGATCGGGTCTGCCTTCTGGGAGGCTTACCTGTGTCCGCTGGGGTGATTGATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.97

Weight (kDa)

5.02

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 5 cut(s) 84, 131, 158, 308, 378
AclWI GGATC 3 cut(s) 104, 327, 351
AcsI RAATTY 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 67, 119, 249
AjnI CCWGG 2 cut(s) 79, 112
AluBI AGCT 2 cut(s) 276, 301
AluI AGCT 2 cut(s) 276, 301
AlwI GGATC 3 cut(s) 104, 327, 351
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 397
AvaII GGWCC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 2 cut(s) 81, 114
BfaI CTAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 3 cut(s) 132, 277, 309
BlsI GCNGC 3 cut(s) 133, 278, 310
Bme1390I CCNGG 2 cut(s) 81, 114
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 59, 195
BmrFI CCNGG 2 cut(s) 81, 114
BmsI GCATC 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 342
BsaWI WCCGGW 2 cut(s) 60, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 119, 249
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 2 cut(s) 81, 114
BseGI GGATG 2 cut(s) 151, 157
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 67, 119, 249
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 263
BseYI CCCAGC 3 cut(s) 71, 311, 380
BsgI GTGCAG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 61, 243
BslI CCNNNNNNNGG 3 cut(s) 67, 119, 249
Bsp143I GATC 6 cut(s) 40, 109, 332, 337, 343, 391
BspACI CCGC 5 cut(s) 84, 131, 158, 308, 378
BspLI GGNNCC 2 cut(s) 59, 195
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 3 cut(s) 104, 327, 351
BssMI GATC 6 cut(s) 40, 109, 332, 337, 343, 391
Bst2UI CCWGG 2 cut(s) 81, 114
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 14
BstF5I GGATG 2 cut(s) 151, 157
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 6 cut(s) 43, 112, 335, 340, 346, 394
BstMBI GATC 6 cut(s) 40, 109, 332, 337, 343, 391
BstMWI GCNNNNNNNGC 3 cut(s) 137, 298, 314
BstNI CCWGG 2 cut(s) 81, 114
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 79, 112
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtsCI GGATG 2 cut(s) 151, 157
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 4 cut(s) 17, 135, 233, 284
CviJI RGCY 7 cut(s) 12, 71, 276, 301, 311, 317, 366
CviKI_1 RGCY 7 cut(s) 12, 71, 276, 301, 311, 317, 366
DpnI GATC 6 cut(s) 42, 111, 334, 339, 345, 393
DpnII GATC 6 cut(s) 40, 109, 332, 337, 343, 391
Eco47I GGWCC 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 79, 112
FaeI CATG 4 cut(s) 20, 138, 236, 287
FaiI YATR 6 cut(s) 7, 18, 30, 136, 234, 285
FatI CATG 4 cut(s) 16, 134, 232, 283
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 132, 277, 309
FokI GGATG 2 cut(s) 158, 164
Fsp4HI GCNGC 3 cut(s) 132, 277, 309
FspBI CTAG 1 cut(s) 51
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 3 cut(s) 132, 277, 309
GsaI CCCAGC 3 cut(s) 75, 315, 384
HapII CCGG 2 cut(s) 61, 243
HhaI GCGC 1 cut(s) 292
Hin1II CATG 4 cut(s) 20, 138, 236, 287
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 1 cut(s) 117
HpaII CCGG 2 cut(s) 61, 243
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 6 cut(s) 122, 145, 198, 211, 271, 337
Hpy188III TCNNGA 3 cut(s) 179, 330, 341
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 3 cut(s) 214, 315, 365
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 298, 314
Hsp92II CATG 4 cut(s) 20, 138, 236, 287
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 6 cut(s) 40, 109, 332, 337, 343, 391
LmnI GCTCC 2 cut(s) 245, 298
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 46
MalI GATC 6 cut(s) 42, 111, 334, 339, 345, 393
MboI GATC 6 cut(s) 40, 109, 332, 337, 343, 391
MboII GAAGA 2 cut(s) 179, 229
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 332
MluCI AATT 3 cut(s) 36, 168, 325
MnlI CCTC 5 cut(s) 48, 94, 148, 217, 356
MroXI GAANNNNTTC 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 61, 243
MspR9I CCNGG 2 cut(s) 81, 114
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 81, 114
MwoI GCNNNNNNNGC 3 cut(s) 137, 298, 314
NdeII GATC 6 cut(s) 40, 109, 332, 337, 343, 391
NlaIII CATG 4 cut(s) 20, 138, 236, 287
NlaIV GGNNCC 2 cut(s) 59, 195
NsbI TGCGCA 1 cut(s) 291
NspI RCATGY 1 cut(s) 20
PaqCI CACCTGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 133, 278, 310
Psp6I CCWGG 2 cut(s) 79, 112
PspFI CCCAGC 3 cut(s) 71, 311, 380
PspGI CCWGG 2 cut(s) 79, 112
PspN4I GGNNCC 2 cut(s) 59, 195
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 332
SatI GCNGC 3 cut(s) 132, 277, 309
Sau3AI GATC 6 cut(s) 40, 109, 332, 337, 343, 391
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 81, 114
SetI ASST 5 cut(s) 59, 94, 278, 303, 373
SfaNI GCATC 1 cut(s) 149
SinI GGWCC 1 cut(s) 194
Sse9I AATT 3 cut(s) 36, 168, 325
SsiI CCGC 5 cut(s) 84, 131, 158, 308, 378
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 79, 112
TaaI ACNGT 1 cut(s) 259
TasI AATT 3 cut(s) 36, 168, 325
TauI GCSGC 2 cut(s) 134, 311
TfiI GAWTC 1 cut(s) 117
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 221, 272
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.