Rh4BG396000
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018247
Physical Location & Seq
Forward (+)
54744654 .. 54758301
13648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG396000.1

Sequence Viewer

Length: 570 bp
ATGATCCGCAATGATCTGGTTACTAGGAGGGTCCGGTGGTTGGCTGGGTTGAGTGCCGGTGCTTACGAGGAGTGTGAACCTGGGTTCGGAGAAAGGGCGGCATGGGGATCTGATGGGGATGAGGCGGGTTGTCCAATTGGACTCCCCGGTTATCTTCTGGGTCCGATTGGGTGGTCGGAAGTGAAGAAGGAGGTGTCTGATGGGTGCTCCGGTGAGGGGTTTACGGTTTGGCCATCGGAAAGCTGCTTTCATGGTGCGCAGGCGGAGGTGTGGGCGGCTGGGGCTGGAAGGAATTCCAGATCCGATCTGGATCGGGTCTGCCTTCTGGGAAGCTTACCTGTGTACGCTGGGGTGACTGATCGGTGGTGGCAACAAGGGGCGACGGCGACGGCGGTGCTGCTGCGTGGTTGGTGTCTTTTGGAATTTGCAAATTCAGGCCTGCTTCGATGCGGTAAAAGTTGCAGACTTCGGTGGATAAACTATCTACGGCCAGACCTTAAAAGGGGCAAGTTTGCTGAAGATGAAGAAGACCTCATCATTAAACTTCATGCACTCCTAGGCAATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

5.77

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
AciI CCGC 7 cut(s) 7, 98, 125, 263, 275, 392, 450
AclWI GGATC 3 cut(s) 115, 294, 318
AcoI YGGCCR 2 cut(s) 230, 488
AcsI RAATTY 3 cut(s) 292, 422, 430
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 40, 86, 216, 502
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 243, 333
AluI AGCT 2 cut(s) 243, 333
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 3 cut(s) 115, 294, 318
AoxI GGCC 3 cut(s) 230, 436, 488
ApeKI GCWGC 3 cut(s) 243, 397, 400
ApoI RAATTY 3 cut(s) 292, 422, 430
Asp700I GAANNNNTTC 1 cut(s) 292
AspA2I CCTAGG 1 cut(s) 556
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 31, 161
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 224, 364
AvaII GGWCC 2 cut(s) 31, 161
AvrII CCTAGG 1 cut(s) 556
BalI TGGCCA 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 230, 384, 387
BccI CCATC 3 cut(s) 107, 194, 241
BceAI ACGGC 3 cut(s) 399, 405, 503
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 147
BfaI CTAG 2 cut(s) 24, 557
BisI GCNGC 5 cut(s) 99, 244, 276, 398, 401
BlnI CCTAGG 1 cut(s) 556
BlsI GCNGC 5 cut(s) 100, 245, 277, 399, 402
Bme1390I CCNGG 2 cut(s) 81, 147
Bme18I GGWCC 2 cut(s) 31, 161
BmgT120I GGNCC 2 cut(s) 31, 161
BmiI GGNNCC 2 cut(s) 32, 162
BmrFI CCNGG 2 cut(s) 81, 147
BmsI GCATC 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 80, 145, 556
BsaWI WCCGGW 2 cut(s) 33, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 86, 216, 502
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 80, 145, 556
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 40, 86, 216, 502
BseMI GCAATG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 230, 384, 387
BseYI CCCAGC 3 cut(s) 44, 278, 347
BshFI GGCC 3 cut(s) 232, 438, 490
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 4 cut(s) 34, 57, 147, 210
BslI CCNNNNNNNGG 4 cut(s) 40, 86, 216, 502
BsnI GGCC 3 cut(s) 232, 438, 490
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
BspACI CCGC 7 cut(s) 7, 98, 125, 263, 275, 392, 450
BspANI GGCC 3 cut(s) 232, 438, 490
BspLI GGNNCC 2 cut(s) 32, 162
BspPI GGATC 3 cut(s) 115, 294, 318
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 80, 145, 556
BssMI GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 261, 440
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 7 cut(s) 6, 16, 110, 302, 307, 313, 361
BstMBI GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 145
BstV1I GCAGC 3 cut(s) 230, 384, 387
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 107, 299
BstYI RGATCY 2 cut(s) 107, 299
BsuRI GGCC 3 cut(s) 232, 438, 490
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 261, 440
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 31, 161
Csp6I GTAC 1 cut(s) 343
CviAII CATG 3 cut(s) 102, 251, 548
CviJI RGCY 8 cut(s) 44, 232, 243, 278, 284, 333, 438, 490
CviKI_1 RGCY 8 cut(s) 44, 232, 243, 278, 284, 333, 438, 490
CviQI GTAC 1 cut(s) 343
DpnI GATC 7 cut(s) 5, 15, 109, 301, 306, 312, 360
DpnII GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
EaeI YGGCCR 2 cut(s) 230, 488
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 438
Eco47I GGWCC 2 cut(s) 31, 161
Eco57I CTGAAG 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 3 cut(s) 105, 254, 551
FaiI YATR 3 cut(s) 103, 252, 549
FatI CATG 3 cut(s) 101, 250, 547
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 5 cut(s) 99, 244, 276, 398, 401
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 99, 244, 276, 398, 401
FspBI CTAG 2 cut(s) 24, 557
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 1 cut(s) 258
GluI GCNGC 5 cut(s) 99, 244, 276, 398, 401
GsaI CCCAGC 3 cut(s) 48, 282, 351
HaeIII GGCC 3 cut(s) 232, 438, 490
HapII CCGG 4 cut(s) 34, 57, 147, 210
HhaI GCGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 105, 254, 551
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 141
HpaII CCGG 4 cut(s) 34, 57, 147, 210
HphI GGTGA 2 cut(s) 224, 364
Hpy166II GTNNAC 3 cut(s) 77, 222, 343
Hpy188I TCNGA 7 cut(s) 89, 112, 165, 178, 199, 238, 304
Hpy188III TCNNGA 2 cut(s) 297, 308
Hpy8I GTNNAC 3 cut(s) 77, 222, 343
Hpy99I CGWCG 2 cut(s) 385, 391
HpyAV CCTTC 3 cut(s) 181, 282, 332
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 428, 462, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
Hsp92II CATG 3 cut(s) 105, 254, 551
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 3 cut(s) 230, 384, 387
LweI GCATC 1 cut(s) 437
MaeI CTAG 2 cut(s) 24, 557
MaeIII GTNAC 2 cut(s) 19, 352
MalI GATC 7 cut(s) 5, 15, 109, 301, 306, 312, 360
MboI GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
MboII GAAGA 5 cut(s) 146, 196, 530, 536, 539
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 107, 299
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 4 cut(s) 135, 292, 422, 430
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 7 cut(s) 21, 61, 115, 184, 208, 259, 542
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 292
MscI TGGCCA 1 cut(s) 232
MseI TTAA 2 cut(s) 498, 540
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 4 cut(s) 34, 57, 147, 210
MspR9I CCNGG 2 cut(s) 81, 147
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 147
NdeII GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
NlaIII CATG 3 cut(s) 105, 254, 551
NlaIV GGNNCC 2 cut(s) 32, 162
NmuCI GTSAC 1 cut(s) 352
NsbI TGCGCA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 292
PkrI GCNGC 5 cut(s) 100, 245, 277, 399, 402
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 3 cut(s) 44, 278, 347
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 32, 162
PspPI GGNCC 2 cut(s) 31, 161
PsuI RGATCY 2 cut(s) 107, 299
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 2 cut(s) 498, 540
SatI GCNGC 5 cut(s) 99, 244, 276, 398, 401
Sau3AI GATC 7 cut(s) 3, 13, 107, 299, 304, 310, 358
Sau96I GGNCC 2 cut(s) 31, 161
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 81, 147
SduI GDGCHC 1 cut(s) 209
SetI ASST 8 cut(s) 82, 195, 245, 270, 335, 340, 498, 534
SfaNI GCATC 1 cut(s) 437
SinI GGWCC 2 cut(s) 31, 161
Sse9I AATT 4 cut(s) 135, 292, 422, 430
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 7 cut(s) 7, 98, 125, 263, 275, 392, 450
SspMI CTAG 2 cut(s) 24, 557
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 79, 145
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 445
TasI AATT 4 cut(s) 135, 292, 422, 430
TauI GCSGC 2 cut(s) 101, 278
Tru1I TTAA 2 cut(s) 498, 540
Tru9I TTAA 2 cut(s) 498, 540
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 243, 397, 400
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 239, 536, 537
VpaK11BI GGWCC 2 cut(s) 31, 161
XapI RAATTY 3 cut(s) 292, 422, 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 2 cut(s) 24, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.