Rh4CG411100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018247
Physical Location & Seq
Forward (+)
65649793 .. 65651862
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG411100.1

Sequence Viewer

Length: 783 bp
ATGACGGTTTACAAGGTTCTTGACCGGCGGAGGCTTGGTAGGAGGAGTGGAATGTCAGCGACTGGTCTGATTTGGACGGAGGAGCCGTACGGGGACGTGGTGGCTGGATTGATCTGGTCTGTCAGACTGTGGGGCTTGGTGAGACCTCTAGGCTTGGACGGAGACGTGGTTGAAACGGTATGTGGCTGGCATGTTGTAATCCAGATCCGCAATGATCTGGTTACTAGGAGGGTCCGGTGGTTGGCTGGGTTGAGTGCCGGTGCTTACGAGGAGTGTGAACCTGGGTTCGGAGAAAGGGCGGCATGGGGATCTGATGGGGATGAGGCGGGTTGTCCAATTGGACTCCCCGGTTATCTTCTGGGTCCGATTGGGTGGTCGGAAGTGAAGAAGGAGGTGTCTGATGGGTGCTCCGGTGAGGGGTTTACGGTTTGGCCATCGGAAAGCTGCTTTCATGGTGCGCAGGCGGAGGTGTGGGCGGCTGGGGCTGGAAGGAATTCCAGATCCGATCTGGATCGGGTCTGCCTTCTGGGAAGCTTACCTGTGTACGCTGGGGTGACTGATCGGTGGTGGCAACAAGGGGCGACGGCGACGGCGGTGCTGCTGCGTGGTTGGTGGTGCGTGTCTGCTCTTGTTTGCGTCACCTGGAGGATGGGCTTAAGGTTTTTGGGCTGCTGCTGTTTGGACCATTTTCTTGGGCTAGGGCTATGGGTCTCTCCTACTTGGGCTAGAGGTGGGGTTTGGGCTCAATTTTGGGCCCTGCCCTGGTTTTCTTTTTATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.68

Weight (kDa)

5.95

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
AciI CCGC 7 cut(s) 28, 208, 299, 326, 464, 476, 593
AclWI GGATC 4 cut(s) 199, 316, 495, 519
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 1 cut(s) 493
AfaI GTAC 2 cut(s) 89, 545
AfiI CCNNNNNNNGG 4 cut(s) 241, 287, 417, 762
AflII CTTAAG 1 cut(s) 655
AgsI TTSAA 1 cut(s) 173
AjiI CACGTC 2 cut(s) 97, 166
AjnI CCWGG 3 cut(s) 280, 641, 761
AluBI AGCT 2 cut(s) 444, 534
AluI AGCT 2 cut(s) 444, 534
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 3 cut(s) 136, 156, 715
AlwI GGATC 4 cut(s) 199, 316, 495, 519
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 2 cut(s) 431, 753
ApaI GGGCCC 1 cut(s) 757
ApeKI GCWGC 5 cut(s) 444, 598, 601, 669, 672
ApoI RAATTY 1 cut(s) 493
Asp700I GAANNNNTTC 1 cut(s) 493
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 5 cut(s) 232, 362, 682, 753, 754
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 4 cut(s) 151, 425, 565, 631
AvaII GGWCC 3 cut(s) 232, 362, 682
BaeGI GKGCMC 1 cut(s) 757
BalI TGGCCA 1 cut(s) 433
BanII GRGCYC 2 cut(s) 745, 757
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 5 cut(s) 431, 585, 588, 656, 659
BccI CCATC 4 cut(s) 308, 395, 442, 643
BceAI ACGGC 3 cut(s) 70, 600, 606
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 3 cut(s) 282, 643, 763
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 3 cut(s) 136, 156, 715
BfaI CTAG 4 cut(s) 149, 225, 698, 726
BfrI CTTAAG 1 cut(s) 655
BisI GCNGC 7 cut(s) 300, 445, 477, 599, 602, 670, 673
BlsI GCNGC 7 cut(s) 301, 446, 478, 600, 603, 671, 674
Bme1390I CCNGG 4 cut(s) 282, 348, 643, 763
Bme18I GGWCC 3 cut(s) 232, 362, 682
BmgBI CACGTC 2 cut(s) 97, 166
BmgT120I GGNCC 5 cut(s) 232, 362, 682, 753, 754
BmiI GGNNCC 4 cut(s) 84, 233, 363, 755
BmrFI CCNGG 4 cut(s) 282, 348, 643, 763
BpmI CTGGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 2 cut(s) 136, 715
BsaJI CCNNGG 3 cut(s) 281, 346, 761
BsaWI WCCGGW 2 cut(s) 234, 410
BsaXI ACNNNNNCTCC 6 cut(s) 22, 52, 71, 101, 153, 183
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 287, 417, 762
Bse118I RCCGGY 2 cut(s) 24, 257
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 3 cut(s) 282, 643, 763
BseDI CCNNGG 3 cut(s) 281, 346, 761
BseGI GGATG 2 cut(s) 325, 654
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 4 cut(s) 241, 287, 417, 762
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 3 cut(s) 58, 95, 284
BseSI GKGCMC 1 cut(s) 757
BseXI GCAGC 5 cut(s) 431, 585, 588, 656, 659
BseYI CCCAGC 3 cut(s) 245, 479, 548
BshFI GGCC 2 cut(s) 433, 755
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 5 cut(s) 25, 235, 258, 348, 411
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 4 cut(s) 241, 287, 417, 762
BsmAI GTCTC 3 cut(s) 136, 156, 715
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 433, 755
Bso31I GGTCTC 2 cut(s) 136, 715
Bsp120I GGGCCC 1 cut(s) 753
Bsp1286I GDGCHC 3 cut(s) 410, 745, 757
Bsp143I GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
BspACI CCGC 7 cut(s) 28, 208, 299, 326, 464, 476, 593
BspANI GGCC 2 cut(s) 433, 755
BspLI GGNNCC 4 cut(s) 84, 233, 363, 755
BspPI GGATC 4 cut(s) 199, 316, 495, 519
BspTI CTTAAG 1 cut(s) 655
BspTNI GGTCTC 2 cut(s) 136, 715
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 2 cut(s) 24, 257
BsrI ACTGG 1 cut(s) 67
BssAI RCCGGY 2 cut(s) 24, 257
BssECI CCNNGG 3 cut(s) 281, 346, 761
BssMI GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
Bst2UI CCWGG 3 cut(s) 282, 643, 763
Bst4CI ACNGT 4 cut(s) 7, 129, 178, 427
BstAFI CTTAAG 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 188, 462
BstF5I GGATG 2 cut(s) 325, 654
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 8 cut(s) 114, 207, 217, 311, 503, 508, 514, 562
BstMAI GTCTC 3 cut(s) 136, 156, 715
BstMBI GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 3 cut(s) 282, 643, 763
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 4 cut(s) 280, 346, 641, 761
BstSLI GKGCMC 1 cut(s) 757
BstV1I GCAGC 5 cut(s) 431, 585, 588, 656, 659
BstX2I RGATCY 3 cut(s) 204, 308, 500
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 3 cut(s) 204, 308, 500
BsuRI GGCC 2 cut(s) 433, 755
BtrI CACGTC 2 cut(s) 97, 166
BtsCI GGATG 2 cut(s) 325, 654
Cac8I GCNNGC 2 cut(s) 188, 462
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 2 cut(s) 24, 257
Cfr13I GGNCC 5 cut(s) 232, 362, 682, 753, 754
CseI GACGC 1 cut(s) 625
Csp6I GTAC 2 cut(s) 88, 544
CviAII CATG 3 cut(s) 191, 303, 452
CviQI GTAC 2 cut(s) 88, 544
DpnI GATC 8 cut(s) 113, 206, 216, 310, 502, 507, 513, 561
DpnII GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
EaeI YGGCCR 1 cut(s) 431
EciI GGCGGA 2 cut(s) 43, 479
Eco24I GRGCYC 2 cut(s) 745, 757
Eco31I GGTCTC 2 cut(s) 136, 715
Eco47I GGWCC 3 cut(s) 232, 362, 682
EcoO109I RGGNCCY 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 3 cut(s) 280, 641, 761
EcoT38I GRGCYC 2 cut(s) 745, 757
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 194, 306, 455
FaiI YATR 5 cut(s) 181, 192, 304, 453, 706
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 190, 302, 451
FauI CCCGC 1 cut(s) 319
Fnu4HI GCNGC 7 cut(s) 300, 445, 477, 599, 602, 670, 673
FokI GGATG 2 cut(s) 332, 661
FriOI GRGCYC 2 cut(s) 745, 757
Fsp4HI GCNGC 7 cut(s) 300, 445, 477, 599, 602, 670, 673
FspBI CTAG 4 cut(s) 149, 225, 698, 726
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 1 cut(s) 459
GluI GCNGC 7 cut(s) 300, 445, 477, 599, 602, 670, 673
GsaI CCCAGC 3 cut(s) 249, 483, 552
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 2 cut(s) 433, 755
HapII CCGG 5 cut(s) 25, 235, 258, 348, 411
HgaI GACGC 1 cut(s) 625
HhaI GCGC 1 cut(s) 460
Hin1II CATG 3 cut(s) 194, 306, 455
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 1 cut(s) 342
HpaII CCGG 5 cut(s) 25, 235, 258, 348, 411
HphI GGTGA 4 cut(s) 151, 425, 565, 631
Hpy166II GTNNAC 4 cut(s) 10, 278, 423, 544
Hpy188I TCNGA 9 cut(s) 69, 125, 290, 313, 366, 379, 400, 439, 505
Hpy188III TCNNGA 4 cut(s) 20, 202, 498, 509
Hpy8I GTNNAC 4 cut(s) 10, 278, 423, 544
Hpy99I CGWCG 2 cut(s) 586, 592
HpyAV CCTTC 3 cut(s) 382, 483, 533
HpyCH4III ACNGT 4 cut(s) 7, 129, 178, 427
HpyCH4IV ACGT 2 cut(s) 96, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 96, 165
Hsp92II CATG 3 cut(s) 194, 306, 455
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
LmnI GCTCC 2 cut(s) 82, 413
Lsp1109I GCAGC 5 cut(s) 431, 585, 588, 656, 659
MaeI CTAG 4 cut(s) 149, 225, 698, 726
MaeII ACGT 2 cut(s) 96, 165
MaeIII GTNAC 3 cut(s) 220, 553, 637
MalI GATC 8 cut(s) 113, 206, 216, 310, 502, 507, 513, 561
MboI GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
MboII GAAGA 2 cut(s) 347, 397
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 3 cut(s) 204, 308, 500
MhlI GDGCHC 3 cut(s) 410, 745, 757
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 3 cut(s) 336, 493, 746
MluNI TGGCCA 1 cut(s) 433
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 493
MscI TGGCCA 1 cut(s) 433
MseI TTAA 2 cut(s) 656, 781
Msp20I TGGCCA 1 cut(s) 433
MspCI CTTAAG 1 cut(s) 655
MspI CCGG 5 cut(s) 25, 235, 258, 348, 411
MspR9I CCNGG 4 cut(s) 282, 348, 643, 763
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 3 cut(s) 282, 643, 763
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 348
NdeII GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
NlaIII CATG 3 cut(s) 194, 306, 455
NlaIV GGNNCC 4 cut(s) 84, 233, 363, 755
NmuCI GTSAC 2 cut(s) 553, 637
NsbI TGCGCA 1 cut(s) 459
NspI RCATGY 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 493
Pfl23II CGTACG 1 cut(s) 87
PkrI GCNGC 7 cut(s) 301, 446, 478, 600, 603, 671, 674
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 3 cut(s) 280, 641, 761
PspFI CCCAGC 3 cut(s) 245, 479, 548
PspGI CCWGG 3 cut(s) 280, 641, 761
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 84, 233, 363, 755
PspOMI GGGCCC 1 cut(s) 753
PspPI GGNCC 5 cut(s) 232, 362, 682, 753, 754
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 3 cut(s) 204, 308, 500
RsaI GTAC 2 cut(s) 89, 545
RsaNI GTAC 2 cut(s) 88, 544
SaqAI TTAA 2 cut(s) 656, 781
SatI GCNGC 7 cut(s) 300, 445, 477, 599, 602, 670, 673
Sau3AI GATC 8 cut(s) 111, 204, 214, 308, 500, 505, 511, 559
Sau96I GGNCC 5 cut(s) 232, 362, 682, 753, 754
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 4 cut(s) 282, 348, 643, 763
SduI GDGCHC 3 cut(s) 410, 745, 757
SinI GGWCC 3 cut(s) 232, 362, 682
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 3 cut(s) 336, 493, 746
SsiI CCGC 7 cut(s) 28, 208, 299, 326, 464, 476, 593
SspMI CTAG 4 cut(s) 149, 225, 698, 726
StyD4I CCNGG 4 cut(s) 280, 346, 641, 761
TaaI ACNGT 4 cut(s) 7, 129, 178, 427
TaiI ACGT 2 cut(s) 99, 168
TasI AATT 3 cut(s) 336, 493, 746
TauI GCSGC 2 cut(s) 302, 479
Tru1I TTAA 2 cut(s) 656, 781
Tru9I TTAA 2 cut(s) 656, 781
TseFI GTSAC 2 cut(s) 553, 637
TseI GCWGC 5 cut(s) 444, 598, 601, 669, 672
Tsp45I GTSAC 2 cut(s) 553, 637
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 92, 174
Vha464I CTTAAG 1 cut(s) 655
VpaK11BI GGWCC 3 cut(s) 232, 362, 682
XapI RAATTY 1 cut(s) 493
XceI RCATGY 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 4 cut(s) 149, 225, 698, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.