Rh1CG397700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018247
Physical Location & Seq
Reverse (-)
66467214 .. 66470384
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG397700.1

Sequence Viewer

Length: 480 bp
ATGGAAGAAAACTATCTTAACAAAACTGAGGTCCGGTGGTTGGCTGGGTTGCCTGGCGGTGCAGGTGCTTACGAGGAGTGTGATCCTGGTTTCGGAGAAAAGGCGGCATGGGGATCTGATGGGGATGAGGCGGGTTGTCCAATTGGACTTCCCGATTATCTTCTGGGTCCGATTAGGTGGTTGGATGTGAAGAAGGAGGCGTCTGATGGTTGTTCCGGTGATGGGTTTACGGTTTGGCCATCCGAAAGCTACTTTCATGGTGTGCAGGCGGAGGTGTGGGCGGCTGGGGCTGGAAGGAATTCCAGCTCCGAACTGGATCGGGTCTGCCTTCTGGGAGGCTTACCTGTGTATGCTGGGGTGACTGATCTGTGGTGGCACCAAGGGGCGACGGCGACGGCGGTGCTGCTGCGGGGTTGGTGGAGTGATTTCACCTCTATAAGCAAACTTGCTATTACACAAACTGATAAAAATCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.1

Weight (kDa)

4.42

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 375
AciI CCGC 7 cut(s) 57, 104, 131, 269, 281, 398, 409
AclWI GGATC 3 cut(s) 77, 121, 324
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 40, 92, 222
AjnI CCWGG 2 cut(s) 52, 85
AluBI AGCT 2 cut(s) 249, 306
AluI AGCT 2 cut(s) 249, 306
AlwI GGATC 3 cut(s) 77, 121, 324
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 403, 406
ApoI RAATTY 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
Asp700I GAANNNNTTC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 31, 167
AsuHPI GGTGA 3 cut(s) 230, 370, 421
AvaII GGWCC 2 cut(s) 31, 167
BalI TGGCCA 1 cut(s) 238
BanI GGYRCC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 390, 393
BccI CCATC 4 cut(s) 113, 200, 215, 247
BceAI ACGGC 2 cut(s) 405, 411
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 2 cut(s) 54, 87
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 105, 282, 404, 407
BlsI GCNGC 4 cut(s) 106, 283, 405, 408
Bme1390I CCNGG 2 cut(s) 54, 87
Bme18I GGWCC 2 cut(s) 31, 167
BmgT120I GGNCC 2 cut(s) 31, 167
BmiI GGNNCC 2 cut(s) 168, 377
BmrFI CCNGG 2 cut(s) 54, 87
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 2 cut(s) 33, 215
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 92, 222
Bse1I ACTGG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 54, 87
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 3 cut(s) 130, 190, 239
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 40, 92, 222
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 390, 393
BseYI CCCAGC 3 cut(s) 44, 284, 353
BsgI GTGCAG 2 cut(s) 81, 284
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 34, 216
BslI CCNNNNNNNGG 3 cut(s) 40, 92, 222
BsnI GGCC 1 cut(s) 238
Bsp143I GATC 4 cut(s) 82, 113, 316, 364
BspACI CCGC 7 cut(s) 57, 104, 131, 269, 281, 398, 409
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 168, 377
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 77, 121, 324
BspT107I GGYRCC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 4 cut(s) 82, 113, 316, 364
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 2 cut(s) 54, 87
Bst4CI ACNGT 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 130, 190, 239
BstKTI GATC 4 cut(s) 85, 116, 319, 367
BstMBI GATC 4 cut(s) 82, 113, 316, 364
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 54, 87
BstSCI CCNGG 2 cut(s) 52, 85
BstV1I GCAGC 2 cut(s) 390, 393
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 130, 190, 239
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 31, 167
CseI GACGC 1 cut(s) 189
CviAII CATG 2 cut(s) 108, 257
CviJI RGCY 7 cut(s) 44, 238, 249, 284, 290, 306, 339
CviKI_1 RGCY 7 cut(s) 44, 238, 249, 284, 290, 306, 339
DdeI CTNAG 1 cut(s) 27
DpnI GATC 4 cut(s) 84, 115, 318, 366
DpnII GATC 4 cut(s) 82, 113, 316, 364
EaeI YGGCCR 1 cut(s) 236
EciI GGCGGA 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 31, 167
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 52, 85
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 111, 260
FaiI YATR 4 cut(s) 109, 258, 351, 437
FatI CATG 2 cut(s) 107, 256
FauI CCCGC 2 cut(s) 124, 402
Fnu4HI GCNGC 4 cut(s) 105, 282, 404, 407
FokI GGATG 3 cut(s) 137, 197, 226
Fsp4HI GCNGC 4 cut(s) 105, 282, 404, 407
GluI GCNGC 4 cut(s) 105, 282, 404, 407
GsaI CCCAGC 3 cut(s) 48, 288, 357
HaeIII GGCC 1 cut(s) 238
HapII CCGG 2 cut(s) 34, 216
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 111, 260
HpaII CCGG 2 cut(s) 34, 216
HphI GGTGA 3 cut(s) 230, 370, 421
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 6 cut(s) 95, 118, 171, 205, 244, 310
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 2 cut(s) 391, 397
HpyAV CCTTC 3 cut(s) 187, 288, 338
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 62, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 111, 260
Kzo9I GATC 4 cut(s) 82, 113, 316, 364
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 390, 393
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 84, 115, 318, 366
MboI GATC 4 cut(s) 82, 113, 316, 364
MboII GAAGA 3 cut(s) 17, 152, 202
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 2 cut(s) 141, 298
MluNI TGGCCA 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 22, 67, 121, 190, 265, 329, 442
Mox20I TGGCCA 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 298
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 238
MspI CCGG 2 cut(s) 34, 216
MspR9I CCNGG 2 cut(s) 54, 87
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 2 cut(s) 54, 87
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 4 cut(s) 82, 113, 316, 364
NlaIII CATG 2 cut(s) 111, 260
NlaIV GGNNCC 2 cut(s) 168, 377
NmuCI GTSAC 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 298
PkrI GCNGC 4 cut(s) 106, 283, 405, 408
Psp6I CCWGG 2 cut(s) 52, 85
PspFI CCCAGC 3 cut(s) 44, 284, 353
PspGI CCWGG 2 cut(s) 52, 85
PspN4I GGNNCC 2 cut(s) 168, 377
PspPI GGNCC 2 cut(s) 31, 167
PsuI RGATCY 1 cut(s) 113
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 4 cut(s) 105, 282, 404, 407
Sau3AI GATC 4 cut(s) 82, 113, 316, 364
Sau96I GGNCC 2 cut(s) 31, 167
ScrFI CCNGG 2 cut(s) 54, 87
SetI ASST 8 cut(s) 33, 67, 179, 251, 276, 308, 346, 434
SinI GGWCC 2 cut(s) 31, 167
Sse9I AATT 2 cut(s) 141, 298
SsiI CCGC 7 cut(s) 57, 104, 131, 269, 281, 398, 409
StyD4I CCNGG 2 cut(s) 52, 85
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 232
TasI AATT 2 cut(s) 141, 298
TauI GCSGC 2 cut(s) 107, 284
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 403, 406
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 31, 167
XapI RAATTY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.