Rh1AG094200

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018247
Physical Location & Seq
Forward (+)
16419766 .. 16430936
11171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG094200.1

Sequence Viewer

Length: 1431 bp
ATGTTGCCTGGCATTAAGATTAGCTTGAAGAAAACGACTGGCCAAGAAAGGCGCCTTACATCCTGGGCAGCGCTTGATGATCCACAACCCGGAAAGTTCACCTTCGGCATAGACCCTAAAGTACCAGTTCAGTGCTTTACCTGGAAGGAAAATACTCGGTATTGGAGAAGTTCTATTTACATCGGTAAGGATACAAGAACAGCGTTTCAAAATCCAAGTGGAACTGCTTTTTTCCTTTCTTACAACTTTGATGTTGATGAGGTTTATCTTGCTTTAAGTGTCTCGGATAGCTCAGTAAAATTGAGGGTCTGGTTGAATCCTACAGGGCAACTTATATTGCTGCTGTGGCAGAGTTCTACTAAAACGTGGTTGGATCTGGGTAATTCCCCTGGTGATGATAACTGTGATTTTTATGCTCGTTGCGGTCCCAATAGTGCCTGTCGTGAACATGAACACCTGTCATCACCATGCAAGTGTTTGACTGGTTTTACAGCCAAGTTTCCGAACCAATCAGCGGTGGGGGATTGGTCCAGTGGCTGCGTTAGGGAAAAGGTGTTGAAATGTGGTAACGGAATACAAGGAAACTTTTCAAAGCTTGAAAAGGTGAAACTTCCGGATCATTCTGTTATGTTGAAGAACAGGAGTATGAGCGAGTGTCACTTTGAATGTCAGCAGAACTGTTCTTGCACAGCTTATGCTTATGTAAATGAGACATATGGAAGTAATATTGGGAAATGTTTGACATGGTCTGGCGAATTACTGGATCTAGTAGATAATCACAGTATTGTTGCGCACGATATCTATATTCGTGTCCACGGCTCCCAACTAGGCAAAAAGGGTCTTTCTGTTAATTCCTTGAAGTGGATCCTGGCAATTGCAATAGTCTCTGCAGCAGTTGGATTGCTTACAATAACTGGCTATGTATGGAAGAAAAAATTGGGCTTGGACGGAGACGTGGTTGAAACGGTATGTGGCTGGCATGTTGTAACCCAGATCCAAATTGCTCTGGTTACTAGGAGGTTCCGGTGGTTGGCTGGGTTGCCTGGCGGTGCAAGTGCTTACGAGGAGTGTGATCCTGGGTTCGGAGAAAGGGCGGCATGGGGATCTGATGGGGATGAGGCGGGTTGTCCAATTGGACTTCCCGATTATCTTCTGGGTCCGATTGGGTGGTCGGATGTGAAGAAGGAGGCGTCTGATGGTTGCTCCGGTGATGGGTTTACGGTTTGGCCATCCGAAAGCTGCTTTCATGGTGCGCAAGCGGAGGTGTGGGTGGATGGGGCTGGAAGGAATTCCAGATCCGAACTGGATCGGGTCTGCCTTCTGGGAGGCTTACCTGTGTACGATGGGGTGACTGATCTGTGGTGGCACCAAGGGGCGACGGCGACAGCGGTGCTGCTGCGGGGTTGGTGGTGCGTGTCTGCTACTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

476

Amino Acids

52.2

Weight (kDa)

6.22

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 75 - 166 7.8e-16 S-locus glycoprotein domain
PAN_2 PF08276 194 - 256 8.6e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 792, 1254
AccB1I GGYRCC 2 cut(s) 51, 1365
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 8 cut(s) 423, 515, 1047, 1094, 1121, 1259, 1388, 1399
AcoI YGGCCR 2 cut(s) 40, 1226
AcsI RAATTY 1 cut(s) 1288
AcyI GRCGYC 2 cut(s) 52, 1190
AfaI GTAC 2 cut(s) 123, 1340
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 6 cut(s) 89, 514, 861, 1030, 1082, 1212
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 7 cut(s) 7, 62, 140, 388, 867, 1042, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 5 cut(s) 24, 291, 595, 692, 1239
AluI AGCT 5 cut(s) 24, 291, 595, 692, 1239
Alw26I GTCTC 4 cut(s) 286, 704, 889, 945
AlwNI CAGNNNCTG 1 cut(s) 537
Aor13HI TCCGGA 1 cut(s) 613
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 2 cut(s) 40, 1226
ApeKI GCWGC 7 cut(s) 68, 340, 537, 890, 1239, 1393, 1396
ApoI RAATTY 1 cut(s) 1288
Asp700I GAANNNNTTC 2 cut(s) 586, 1288
AspLEI GCGC 4 cut(s) 54, 73, 793, 1255
AspS9I GGNCC 3 cut(s) 425, 528, 1157
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 91, 404, 456, 616, 1220, 1360
AvaII GGWCC 3 cut(s) 425, 528, 1157
BalI TGGCCA 2 cut(s) 42, 1228
BamHI GGATCC 1 cut(s) 864
BanI GGYRCC 2 cut(s) 51, 1365
BbvI GCAGC 7 cut(s) 80, 327, 524, 902, 1226, 1380, 1383
BccI CCATC 6 cut(s) 1103, 1190, 1205, 1237, 1268, 1337
BceAI ACGGC 2 cut(s) 832, 1395
BcgI CGANNNNNNTGC 2 cut(s) 1372, 1406
BciT130I CCWGG 7 cut(s) 9, 64, 142, 390, 869, 1044, 1077
BciVI GTATCC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 4 cut(s) 286, 704, 889, 945
BfaI CTAG 4 cut(s) 767, 827, 1014, 1429
BfmI CTRYAG 2 cut(s) 321, 888
BfoI RGCGCY 2 cut(s) 55, 74
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 8 cut(s) 69, 341, 538, 891, 1095, 1240, 1394, 1397
BlsI GCNGC 8 cut(s) 70, 342, 539, 892, 1096, 1241, 1395, 1398
Bme1390I CCNGG 8 cut(s) 9, 64, 90, 142, 390, 869, 1044, 1077
Bme18I GGWCC 3 cut(s) 425, 528, 1157
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 3 cut(s) 425, 528, 1157
BmiI GGNNCC 7 cut(s) 53, 427, 820, 866, 1022, 1158, 1367
BmrFI CCNGG 8 cut(s) 9, 64, 90, 142, 390, 869, 1044, 1077
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 2 cut(s) 52, 1190
BsaJI CCNNGG 5 cut(s) 63, 388, 814, 1076, 1369
BsaWI WCCGGW 3 cut(s) 613, 1023, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 6 cut(s) 89, 514, 861, 1030, 1082, 1212
Bse1I ACTGG 7 cut(s) 43, 125, 487, 531, 765, 919, 1308
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 7 cut(s) 9, 64, 142, 390, 869, 1044, 1077
BseDI CCNNGG 5 cut(s) 63, 388, 814, 1076, 1369
BseGI GGATG 5 cut(s) 59, 1120, 1180, 1229, 1279
BseLI CCNNNNNNNGG 6 cut(s) 89, 514, 861, 1030, 1082, 1212
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 7 cut(s) 43, 125, 487, 531, 765, 919, 1308
BseRI GAGGAG 1 cut(s) 1079
BseXI GCAGC 7 cut(s) 80, 327, 524, 902, 1226, 1380, 1383
BseYI CCCAGC 1 cut(s) 1034
BshFI GGCC 2 cut(s) 42, 1228
BshNI GGYRCC 2 cut(s) 51, 1365
BsiSI CCGG 4 cut(s) 90, 614, 1024, 1206
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 6 cut(s) 89, 514, 861, 1030, 1082, 1212
BsmAI GTCTC 4 cut(s) 286, 704, 889, 945
BsmBI CGTCTC 1 cut(s) 945
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 2 cut(s) 42, 1228
Bsp13I TCCGGA 1 cut(s) 613
BspACI CCGC 8 cut(s) 423, 515, 1047, 1094, 1121, 1259, 1388, 1399
BspANI GGCC 2 cut(s) 42, 1228
BspCNI CTCAG 1 cut(s) 305
BspEI TCCGGA 1 cut(s) 613
BspLI GGNNCC 7 cut(s) 53, 427, 820, 866, 1022, 1158, 1367
BspMAI CTGCAG 1 cut(s) 892
BspT107I GGYRCC 2 cut(s) 51, 1365
BsrI ACTGG 7 cut(s) 43, 125, 487, 531, 765, 919, 1308
BssECI CCNNGG 5 cut(s) 63, 388, 814, 1076, 1369
BssNI GRCGYC 2 cut(s) 52, 1190
BssT1I CCWWGG 1 cut(s) 1369
Bst2UI CCWGG 7 cut(s) 9, 64, 142, 390, 869, 1044, 1077
Bst4CI ACNGT 6 cut(s) 404, 680, 782, 967, 1222, 1426
BstACI GRCGYC 2 cut(s) 52, 1190
BstC8I GCNNGC 2 cut(s) 977, 1257
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 814
BstF5I GGATG 5 cut(s) 59, 1120, 1180, 1229, 1279
BstH2I RGCGCY 2 cut(s) 55, 74
BstHHI GCGC 4 cut(s) 54, 73, 793, 1255
BstMAI GTCTC 4 cut(s) 286, 704, 889, 945
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 7 cut(s) 9, 64, 142, 390, 869, 1044, 1077
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 8 cut(s) 7, 62, 88, 140, 388, 867, 1042, 1075
BstSFI CTRYAG 2 cut(s) 321, 888
BstV1I GCAGC 7 cut(s) 80, 327, 524, 902, 1226, 1380, 1383
BstX2I RGATCY 6 cut(s) 373, 763, 864, 993, 1103, 1295
BstYI RGATCY 6 cut(s) 373, 763, 864, 993, 1103, 1295
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 42, 1228
BtgI CCRYGG 1 cut(s) 814
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 5 cut(s) 59, 1120, 1180, 1229, 1279
BtsIMutI CAGTG 2 cut(s) 137, 538
Cac8I GCNNGC 2 cut(s) 977, 1257
CaiI CAGNNNCTG 1 cut(s) 537
CfoI GCGC 4 cut(s) 54, 73, 793, 1255
Cfr13I GGNCC 3 cut(s) 425, 528, 1157
CseI GACGC 1 cut(s) 1179
Csp6I GTAC 2 cut(s) 122, 1339
CviAII CATG 6 cut(s) 449, 468, 744, 980, 1098, 1247
CviQI GTAC 2 cut(s) 122, 1339
DdeI CTNAG 1 cut(s) 292
DinI GGCGCC 1 cut(s) 53
EaeI YGGCCR 2 cut(s) 40, 1226
Eco130I CCWWGG 1 cut(s) 1369
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 3 cut(s) 425, 528, 1157
Eco47III AGCGCT 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 1288
EcoRII CCWGG 7 cut(s) 7, 62, 140, 388, 867, 1042, 1075
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 1369
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 1369
Esp3I CGTCTC 1 cut(s) 945
FaeI CATG 6 cut(s) 452, 471, 747, 983, 1101, 1250
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 86, 118
FaqI GGGAC 1 cut(s) 411
FatI CATG 6 cut(s) 448, 467, 743, 979, 1097, 1246
FauI CCCGC 2 cut(s) 1114, 1392
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 8 cut(s) 69, 341, 538, 891, 1095, 1240, 1394, 1397
FokI GGATG 5 cut(s) 46, 1127, 1187, 1216, 1286
Fsp4HI GCNGC 8 cut(s) 69, 341, 538, 891, 1095, 1240, 1394, 1397
FspBI CTAG 4 cut(s) 767, 827, 1014, 1429
FspI TGCGCA 2 cut(s) 792, 1254
GlaI GCGC 4 cut(s) 53, 72, 792, 1254
GluI GCNGC 8 cut(s) 69, 341, 538, 891, 1095, 1240, 1394, 1397
GsaI CCCAGC 1 cut(s) 1038
HaeII RGCGCY 2 cut(s) 55, 74
HaeIII GGCC 2 cut(s) 42, 1228
HapII CCGG 4 cut(s) 90, 614, 1024, 1206
HgaI GACGC 1 cut(s) 1179
HhaI GCGC 4 cut(s) 54, 73, 793, 1255
Hin1I GRCGYC 2 cut(s) 52, 1190
Hin1II CATG 6 cut(s) 452, 471, 747, 983, 1101, 1250
Hin6I GCGC 4 cut(s) 52, 71, 791, 1253
HinP1I GCGC 4 cut(s) 52, 71, 791, 1253
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 1 cut(s) 316
HpaII CCGG 4 cut(s) 90, 614, 1024, 1206
HphI GGTGA 6 cut(s) 91, 404, 456, 616, 1220, 1360
Hpy166II GTNNAC 5 cut(s) 99, 446, 814, 1218, 1339
Hpy188I TCNGA 9 cut(s) 286, 504, 1085, 1108, 1161, 1174, 1195, 1234, 1300
Hpy188III TCNNGA 4 cut(s) 443, 614, 1142, 1293
Hpy8I GTNNAC 5 cut(s) 99, 446, 814, 1218, 1339
Hpy99I CGWCG 1 cut(s) 1381
HpyAV CCTTC 5 cut(s) 112, 139, 1177, 1278, 1328
HpyCH4III ACNGT 6 cut(s) 404, 680, 782, 967, 1222, 1426
HpyCH4IV ACGT 2 cut(s) 365, 954
HpyCH4V TGCA 5 cut(s) 471, 687, 878, 890, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 365, 954
Hsp92I GRCGYC 2 cut(s) 52, 1190
Hsp92II CATG 6 cut(s) 452, 471, 747, 983, 1101, 1250
HspAI GCGC 4 cut(s) 52, 71, 791, 1253
KasI GGCGCC 1 cut(s) 51
Kpn2I TCCGGA 1 cut(s) 613
LmnI GCTCC 2 cut(s) 824, 1208
Lsp1109I GCAGC 7 cut(s) 80, 327, 524, 902, 1226, 1380, 1383
MaeI CTAG 4 cut(s) 767, 827, 1014, 1429
MaeII ACGT 2 cut(s) 365, 954
MaeIII GTNAC 5 cut(s) 566, 656, 985, 1009, 1348
MboII GAAGA 5 cut(s) 40, 646, 940, 1142, 1192
MfeI CAATTG 2 cut(s) 873, 1131
MflI RGATCY 6 cut(s) 373, 763, 864, 993, 1103, 1295
MlsI TGGCCA 2 cut(s) 42, 1228
MluCI AATT 9 cut(s) 299, 382, 755, 850, 873, 935, 999, 1131, 1288
MluNI TGGCCA 2 cut(s) 42, 1228
Mly113I GGCGCC 1 cut(s) 52
MmeI TCCRAC 3 cut(s) 351, 877, 1152
MnlI CCTC 8 cut(s) 253, 297, 1011, 1057, 1111, 1180, 1255, 1319
Mox20I TGGCCA 2 cut(s) 42, 1228
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 2 cut(s) 586, 1288
MscI TGGCCA 2 cut(s) 42, 1228
MseI TTAA 3 cut(s) 15, 275, 849
MslI CAYNNNNRTG 2 cut(s) 466, 472
Msp20I TGGCCA 2 cut(s) 42, 1228
MspA1I CMGCKG 2 cut(s) 515, 1388
MspI CCGG 4 cut(s) 90, 614, 1024, 1206
MspR9I CCNGG 8 cut(s) 9, 64, 90, 142, 390, 869, 1044, 1077
MunI CAATTG 2 cut(s) 873, 1131
MvaI CCWGG 7 cut(s) 9, 64, 142, 390, 869, 1044, 1077
MwoI GCNNNNNNNGC 1 cut(s) 346
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 715
NlaIII CATG 6 cut(s) 452, 471, 747, 983, 1101, 1250
NlaIV GGNNCC 7 cut(s) 53, 427, 820, 866, 1022, 1158, 1367
NmuCI GTSAC 2 cut(s) 656, 1348
NsbI TGCGCA 2 cut(s) 792, 1254
NspI RCATGY 1 cut(s) 983
PdmI GAANNNNTTC 2 cut(s) 586, 1288
PfeI GAWTC 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 745
PkrI GCNGC 8 cut(s) 70, 342, 539, 892, 1096, 1241, 1395, 1398
PluTI GGCGCC 1 cut(s) 55
Psp6I CCWGG 7 cut(s) 7, 62, 140, 388, 867, 1042, 1075
PspFI CCCAGC 1 cut(s) 1034
PspGI CCWGG 7 cut(s) 7, 62, 140, 388, 867, 1042, 1075
PspN4I GGNNCC 7 cut(s) 53, 427, 820, 866, 1022, 1158, 1367
PspPI GGNCC 3 cut(s) 425, 528, 1157
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 537
PsuI RGATCY 6 cut(s) 373, 763, 864, 993, 1103, 1295
PsyI GACNNNGTC 1 cut(s) 745
RsaI GTAC 2 cut(s) 123, 1340
RsaNI GTAC 2 cut(s) 122, 1339
RseI CAYNNNNRTG 2 cut(s) 466, 472
SaqAI TTAA 3 cut(s) 15, 275, 849
SatI GCNGC 8 cut(s) 69, 341, 538, 891, 1095, 1240, 1394, 1397
Sau96I GGNCC 3 cut(s) 425, 528, 1157
ScrFI CCNGG 8 cut(s) 9, 64, 90, 142, 390, 869, 1044, 1077
SfcI CTRYAG 2 cut(s) 321, 888
SfoI GGCGCC 1 cut(s) 53
SinI GGWCC 3 cut(s) 425, 528, 1157
SmiMI CAYNNNNRTG 2 cut(s) 466, 472
Sse9I AATT 9 cut(s) 299, 382, 755, 850, 873, 935, 999, 1131, 1288
SsiI CCGC 8 cut(s) 423, 515, 1047, 1094, 1121, 1259, 1388, 1399
SspDI GGCGCC 1 cut(s) 51
SspI AATATT 1 cut(s) 727
SspMI CTAG 4 cut(s) 767, 827, 1014, 1429
StyD4I CCNGG 8 cut(s) 7, 62, 88, 140, 388, 867, 1042, 1075
StyI CCWWGG 1 cut(s) 1369
TaaI ACNGT 6 cut(s) 404, 680, 782, 967, 1222, 1426
TaiI ACGT 2 cut(s) 368, 957
TasI AATT 9 cut(s) 299, 382, 755, 850, 873, 935, 999, 1131, 1288
TauI GCSGC 1 cut(s) 1097
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 15, 275, 849
Tru9I TTAA 3 cut(s) 15, 275, 849
TscAI CASTG 2 cut(s) 137, 538
TseFI GTSAC 2 cut(s) 656, 1348
TseI GCWGC 7 cut(s) 68, 340, 537, 890, 1239, 1393, 1396
Tsp45I GTSAC 2 cut(s) 656, 1348
TspDTI ATGAA 2 cut(s) 465, 1235
TspGWI ACGGA 2 cut(s) 585, 963
TspRI CASTG 2 cut(s) 137, 538
Tth111I GACNNNGTC 1 cut(s) 745
VpaK11BI GGWCC 3 cut(s) 425, 528, 1157
XapI RAATTY 1 cut(s) 1288
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 1300
XmnI GAANNNNTTC 2 cut(s) 586, 1288
XspI CTAG 4 cut(s) 767, 827, 1014, 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.