Rroxscaffold_7G00199610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018247
Physical Location & Seq
Reverse (-)
46496107 .. 46497315
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199610.1

Sequence Viewer

Length: 456 bp
ATGGACATGCGAGGTGTTGTAGGAGGTTCGGTGGTTGGTTGGGTTGCCGGTTGTGCGAGTGCTTACGAGGAGTGTGATCCTGGGTTCGGAGAAAGGGCAGCATGGGGATCTGATGGGGATGAGGTGGGTTGTCCAATTGGACTTCCGGTTATCTTCGGGTCCGATTGGGTGGTCGGATGTGAAGAAGGAGGCGTCGATGGTTGCTCCGATAATGGGTTTACGATTTGGCCATCGAAAGCCTTTCATGGTGCGCGAGCGGAGCGTGTGGGCGGGCGGGGCTGGAAGGAATTCCGGATCCGATCTGGATCGGGTCTGCTTTACGGGAGGCTTACTGTGTACGGCGGGGTGACCGATTGGTGGTGGCAACAAGGGACAACGGCGACGGCGGTCTTTGCGTGGTCGTGGTGCATGTCTGCTATTGTTGCGTCACCCGGAGGATGGGCTTATGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.99

Weight (kDa)

4.61

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 5 cut(s) 257, 270, 274, 342, 386
AclWI GGATC 5 cut(s) 71, 115, 289, 302, 313
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 4 cut(s) 86, 213, 357, 438
AjnI CCWGG 1 cut(s) 79
AlwI GGATC 5 cut(s) 71, 115, 289, 302, 313
Aor13HI TCCGGA 1 cut(s) 291
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 358, 420
AvaII GGWCC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 229
BamHI GGATCC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 110
BccI CCATC 4 cut(s) 107, 191, 238, 432
BceAI ACGGC 3 cut(s) 355, 393, 399
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 432
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 81, 432
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 160, 296
BmrFI CCNGG 2 cut(s) 81, 432
BoxI GACNNNNGTC 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 2 cut(s) 145, 291
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 213, 357, 438
Bse118I RCCGGY 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 124, 182, 443
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 4 cut(s) 86, 213, 357, 438
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 229
BsiSI CCGG 4 cut(s) 48, 146, 292, 432
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 4 cut(s) 86, 213, 357, 438
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 5 cut(s) 76, 107, 294, 299, 305
BspACI CCGC 5 cut(s) 257, 270, 274, 342, 386
BspANI GGCC 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 291
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 160, 296
BspPI GGATC 5 cut(s) 71, 115, 289, 302, 313
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 5 cut(s) 76, 107, 294, 299, 305
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 255, 272
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 3 cut(s) 124, 182, 443
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 5 cut(s) 79, 110, 297, 302, 308
BstMBI GATC 5 cut(s) 76, 107, 294, 299, 305
BstMWI GCNNNNNNNGC 5 cut(s) 53, 259, 276, 392, 422
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 10, 412
BstPAI GACNNNNGTC 1 cut(s) 386
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 79, 430
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 107, 294
BstYI RGATCY 2 cut(s) 107, 294
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 124, 182, 443
Cac8I GCNNGC 2 cut(s) 255, 272
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 2 cut(s) 181, 414
Csp6I GTAC 1 cut(s) 337
CviAII CATG 4 cut(s) 7, 102, 245, 409
CviJI RGCY 5 cut(s) 229, 239, 279, 328, 443
CviKI_1 RGCY 5 cut(s) 229, 239, 279, 328, 443
CviQI GTAC 1 cut(s) 337
DpnI GATC 5 cut(s) 78, 109, 296, 301, 307
DpnII GATC 5 cut(s) 76, 107, 294, 299, 305
EaeI YGGCCR 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 10, 105, 248, 412
FaiI YATR 5 cut(s) 8, 103, 246, 410, 447
FaqI GGGAC 1 cut(s) 385
FatI CATG 4 cut(s) 6, 101, 244, 408
FauI CCCGC 3 cut(s) 263, 267, 335
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 3 cut(s) 131, 189, 450
Fsp4HI GCNGC 1 cut(s) 99
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 229
HapII CCGG 4 cut(s) 48, 146, 292, 432
HgaI GACGC 2 cut(s) 181, 414
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 4 cut(s) 10, 105, 248, 412
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HpaII CCGG 4 cut(s) 48, 146, 292, 432
HphI GGTGA 2 cut(s) 358, 420
Hpy166II GTNNAC 2 cut(s) 219, 337
Hpy188I TCNGA 6 cut(s) 89, 112, 163, 176, 208, 299
Hpy188III TCNNGA 2 cut(s) 292, 303
Hpy8I GTNNAC 2 cut(s) 219, 337
Hpy99I CGWCG 2 cut(s) 197, 385
HpyAV CCTTC 2 cut(s) 179, 277
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 259, 276, 392, 422
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 4 cut(s) 10, 105, 248, 412
HspAI GCGC 1 cut(s) 251
Kpn2I TCCGGA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 76, 107, 294, 299, 305
LmnI GCTCC 2 cut(s) 209, 259
LpnPI CCDG 8 cut(s) 61, 66, 93, 159, 265, 288, 305, 445
Lsp1109I GCAGC 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 346, 426
MalI GATC 5 cut(s) 78, 109, 296, 301, 307
MbiI CCGCTC 1 cut(s) 257
MboI GATC 5 cut(s) 76, 107, 294, 299, 305
MboII GAAGA 2 cut(s) 145, 194
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 107, 294
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 2 cut(s) 135, 287
MluNI TGGCCA 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 7 cut(s) 5, 17, 61, 115, 182, 318, 428
Mox20I TGGCCA 1 cut(s) 229
MroI TCCGGA 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 229
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 4 cut(s) 48, 146, 292, 432
MspR9I CCNGG 2 cut(s) 81, 432
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 5 cut(s) 53, 259, 276, 392, 422
NciI CCSGG 1 cut(s) 432
NdeII GATC 5 cut(s) 76, 107, 294, 299, 305
NlaIII CATG 4 cut(s) 10, 105, 248, 412
NlaIV GGNNCC 2 cut(s) 160, 296
NmuCI GTSAC 2 cut(s) 346, 426
NspI RCATGY 2 cut(s) 10, 412
PdmI GAANNNNTTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 160, 296
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 2 cut(s) 107, 294
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 5 cut(s) 76, 107, 294, 299, 305
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 81, 432
SetI ASST 3 cut(s) 16, 28, 126
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 135, 287
SsiI CCGC 5 cut(s) 257, 270, 274, 342, 386
StyD4I CCNGG 2 cut(s) 79, 430
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 195, 233
TaqII GACCGA 1 cut(s) 365
TasI AATT 2 cut(s) 135, 287
TseFI GTSAC 2 cut(s) 346, 426
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 2 cut(s) 346, 426
TspDTI ATGAA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 287
XceI RCATGY 2 cut(s) 10, 412
XmnI GAANNNNTTC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.