Rh7BG228400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018247
Physical Location & Seq
Reverse (-)
19839400 .. 19840873
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG228400.1

Sequence Viewer

Length: 369 bp
ATGGTTTCGTGGAGGTCGCGAAGGTTGTCAGGGTTGCCTGGCGGTGCAGGTGATTACGGGGGGTGCGATTTCGAGGTCCGGGAAAGGGCGGAGTGGGGATCCGAATGTGTGGGATTGCAGGTTATGAAGACAGTGACGTCTGGTGGTTGCTCTGGTGTCAGATCAAAGTGTTGGATGTCGGAACTCTACTTTCATGGTGCGCAGGTGGCGGTATGGGTGGCTGGGTCTAGATGGAATTCTAGATCCGACCTGGATCGGGTCCGCCTTTTGGTTGAATTATCTGTGATCGTCGAGGTGACTGAATGGTGGTGGCGGCAAGGTTGCGTGGTTGGTTCACGACTGCGCTGTTCCTGTGGCTTGTTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

8.57

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 38, 193
AasI GACNNNNNNGTC 1 cut(s) 136
AatII GACGTC 1 cut(s) 140
Acc16I TGCGCA 1 cut(s) 201
Acc36I ACCTGC 3 cut(s) 38, 109, 193
AccII CGCG 1 cut(s) 19
AciI CCGC 5 cut(s) 42, 89, 209, 262, 313
AclWI GGATC 4 cut(s) 93, 106, 237, 261
AcsI RAATTY 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 85, 256, 268
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 2 cut(s) 37, 249
AlwI GGATC 4 cut(s) 93, 106, 237, 261
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 2 cut(s) 202, 345
AspS9I GGNCC 2 cut(s) 76, 259
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 62, 307
AvaII GGWCC 2 cut(s) 76, 259
BamHI GGATCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 134
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 39, 251
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 2 cut(s) 228, 240
BfuAI ACCTGC 3 cut(s) 38, 109, 193
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 3 cut(s) 39, 80, 251
Bme18I GGWCC 2 cut(s) 76, 259
BmgT120I GGNCC 2 cut(s) 76, 259
BmiI GGNNCC 2 cut(s) 100, 260
BmrFI CCNGG 3 cut(s) 39, 80, 251
BpiI GAAGAC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 137
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 256, 268
BseBI CCWGG 2 cut(s) 39, 251
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 85, 256, 268
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 85, 256, 268
Bsp143I GATC 5 cut(s) 98, 161, 242, 253, 285
Bsp68I TCGCGA 1 cut(s) 19
BspACI CCGC 5 cut(s) 42, 89, 209, 262, 313
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 100, 260
BspMI ACCTGC 3 cut(s) 38, 109, 193
BspPI GGATC 4 cut(s) 93, 106, 237, 261
BssMI GATC 5 cut(s) 98, 161, 242, 253, 285
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 39, 251
Bst4CI ACNGT 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 2 cut(s) 202, 345
BstKTI GATC 5 cut(s) 101, 164, 245, 256, 288
BstMBI GATC 5 cut(s) 98, 161, 242, 253, 285
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 39, 251
BstSCI CCNGG 3 cut(s) 37, 78, 249
BstUI CGCG 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 98, 242
BstYI RGATCY 2 cut(s) 98, 242
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 138
BtuMI TCGCGA 1 cut(s) 19
BveI ACCTGC 3 cut(s) 38, 109, 193
CfoI GCGC 2 cut(s) 202, 345
Cfr13I GGNCC 2 cut(s) 76, 259
CviAII CATG 1 cut(s) 194
CviJI RGCY 2 cut(s) 221, 357
CviKI_1 RGCY 2 cut(s) 221, 357
DpnI GATC 5 cut(s) 100, 163, 244, 255, 287
DpnII GATC 5 cut(s) 98, 161, 242, 253, 285
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EciI GGCGGA 2 cut(s) 104, 251
Eco47I GGWCC 2 cut(s) 76, 259
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 37, 249
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 125, 195, 214
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 2 cut(s) 228, 240
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 2 cut(s) 201, 344
GluI GCNGC 1 cut(s) 314
GsaI CCCAGC 1 cut(s) 225
HapII CCGG 1 cut(s) 79
HhaI GCGC 2 cut(s) 202, 345
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 2 cut(s) 200, 343
HinP1I GCGC 2 cut(s) 200, 343
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 62, 307
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 4 cut(s) 103, 161, 181, 247
Hpy188III TCNNGA 4 cut(s) 18, 228, 240, 336
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 47, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 2 cut(s) 200, 343
Kzo9I GATC 5 cut(s) 98, 161, 242, 253, 285
MaeI CTAG 2 cut(s) 228, 240
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 133, 295
MalI GATC 5 cut(s) 100, 163, 244, 255, 287
MboI GATC 5 cut(s) 98, 161, 242, 253, 285
MboII GAAGA 1 cut(s) 139
MflI RGATCY 2 cut(s) 98, 242
MluCI AATT 2 cut(s) 235, 275
MmeI TCCRAC 3 cut(s) 152, 159, 270
MnlI CCTC 3 cut(s) 6, 67, 286
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 39, 80, 251
MvaI CCWGG 2 cut(s) 39, 251
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 80
NdeII GATC 5 cut(s) 98, 161, 242, 253, 285
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 100, 260
NmuCI GTSAC 2 cut(s) 133, 295
NruI TCGCGA 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 201
PaqCI CACCTGC 2 cut(s) 38, 193
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 37, 249
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 37, 249
PspN4I GGNNCC 2 cut(s) 100, 260
PspPI GGNCC 2 cut(s) 76, 259
PsuI RGATCY 2 cut(s) 98, 242
RruI TCGCGA 1 cut(s) 19
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 5 cut(s) 98, 161, 242, 253, 285
Sau96I GGNCC 2 cut(s) 76, 259
ScrFI CCNGG 3 cut(s) 39, 80, 251
SinI GGWCC 2 cut(s) 76, 259
Sse9I AATT 2 cut(s) 235, 275
SsiI CCGC 5 cut(s) 42, 89, 209, 262, 313
SspMI CTAG 2 cut(s) 228, 240
StyD4I CCNGG 3 cut(s) 37, 78, 249
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 72, 291
TasI AATT 2 cut(s) 235, 275
TauI GCSGC 1 cut(s) 316
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 133, 295
Tsp45I GTSAC 2 cut(s) 133, 295
TspDTI ATGAA 2 cut(s) 140, 182
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 76, 259
XapI RAATTY 1 cut(s) 235
XbaI TCTAGA 2 cut(s) 227, 239
XspI CTAG 2 cut(s) 228, 240
ZraI GACGTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.