Rh7AG015700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018247
Physical Location & Seq
Forward (+)
1023562 .. 1029504
5943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG015700.1

Sequence Viewer

Length: 453 bp
ATGGCTTCCAAGTATCAAACAACTGAGGAGGTTCCGGTGGTTGGGTTGCCCGGCGGTGCAGGTGCTTCTGAGGAGTGTGATCCTGGGTTTGGAGAAAGGGCGGCATGGGGATCTGATAGGGATGAGGCGGGTTGTCCAATTGGACTTCCCGATTACCTGCTGGGTCCGATTGGGTGGTCGAATGTGAAGAAGGAGGCGTCTGATGGTTGCTCCGGTAATGGGTTTACGGTTTGGCCATTGAAAAGCTGCTTTCATGGTGCGCAGGTGGAGGTGTGGGCGGCTGGGGATGGAAGGAATTCCAGATCCGATCTAGATCGGGTCTGCCTTCTGGGAGGCTTACCTGTGTACGCTGGGGTGACTGATCGGTGGTGGCAACAAGGGGCGACGGCAACGGCGACGGCGGTGCTGCTGCGTGTCTGCTATTGTTCTGCGTCACCTGGAGGATGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.66

Weight (kDa)

4.64

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018247)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035741
rosa_roxburghii Rroxscaffold_7G00199610
rosa_samantha Rh1AG094200 Rh1CG397700 Rh2BG309400 Rh4BG396000 Rh4CG411100 Rh6AG245000 Rh7AG015700 Rh7BG228400
rosa_wichuraiana Rw1G007350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 50, 253
Acc16I TGCGCA 1 cut(s) 261
Acc36I ACCTGC 3 cut(s) 50, 165, 253
AciI CCGC 5 cut(s) 54, 101, 128, 278, 401
AclWI GGATC 3 cut(s) 74, 118, 297
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 41, 89, 219
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 2 cut(s) 82, 436
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
AlwI GGATC 3 cut(s) 74, 118, 297
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 246, 406, 409
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 295
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 367, 426
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 235
BbvI GCAGC 3 cut(s) 233, 393, 396
BccI CCATC 3 cut(s) 197, 281, 438
BceAI ACGGC 3 cut(s) 402, 408, 414
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 2 cut(s) 84, 438
BcnI CCSGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 3 cut(s) 50, 165, 253
BisI GCNGC 5 cut(s) 102, 247, 279, 407, 410
BlsI GCNGC 5 cut(s) 103, 248, 280, 408, 411
Bme1390I CCNGG 3 cut(s) 51, 84, 438
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 33, 165
BmrFI CCNGG 3 cut(s) 51, 84, 438
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 2 cut(s) 34, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 89, 219
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 2 cut(s) 84, 438
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 3 cut(s) 127, 292, 449
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 3 cut(s) 41, 89, 219
BseMII CTCAG 2 cut(s) 15, 60
BseRI GAGGAG 2 cut(s) 41, 86
BseXI GCAGC 3 cut(s) 233, 393, 396
BseYI CCCAGC 3 cut(s) 160, 281, 350
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 3 cut(s) 35, 51, 213
BslI CCNNNNNNNGG 3 cut(s) 41, 89, 219
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 6 cut(s) 79, 110, 302, 307, 313, 361
BspACI CCGC 5 cut(s) 54, 101, 128, 278, 401
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 16, 61
BspLI GGNNCC 2 cut(s) 33, 165
BspMI ACCTGC 3 cut(s) 50, 165, 253
BspPI GGATC 3 cut(s) 74, 118, 297
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 6 cut(s) 79, 110, 302, 307, 313, 361
BssNI GRCGYC 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 84, 438
Bst4CI ACNGT 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 24, 69, 450
BstF5I GGATG 3 cut(s) 127, 292, 449
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 6 cut(s) 82, 113, 305, 310, 316, 364
BstMBI GATC 6 cut(s) 79, 110, 302, 307, 313, 361
BstNI CCWGG 2 cut(s) 84, 438
BstSCI CCNGG 3 cut(s) 49, 82, 436
BstV1I GCAGC 3 cut(s) 233, 393, 396
BstX2I RGATCY 2 cut(s) 110, 302
BstYI RGATCY 2 cut(s) 110, 302
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 127, 292, 449
BveI ACCTGC 3 cut(s) 50, 165, 253
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 2 cut(s) 186, 420
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 105, 254
CviJI RGCY 6 cut(s) 5, 235, 246, 281, 336, 449
CviKI_1 RGCY 6 cut(s) 5, 235, 246, 281, 336, 449
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 24, 69, 450
DpnI GATC 6 cut(s) 81, 112, 304, 309, 315, 363
DpnII GATC 6 cut(s) 79, 110, 302, 307, 313, 361
EaeI YGGCCR 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 82, 436
FaeI CATG 2 cut(s) 108, 257
FaiI YATR 2 cut(s) 106, 255
FatI CATG 2 cut(s) 104, 253
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 102, 247, 279, 407, 410
FokI GGATG 2 cut(s) 134, 299
Fsp4HI GCNGC 5 cut(s) 102, 247, 279, 407, 410
FspBI CTAG 1 cut(s) 311
FspI TGCGCA 1 cut(s) 261
GlaI GCGC 1 cut(s) 261
GluI GCNGC 5 cut(s) 102, 247, 279, 407, 410
GsaI CCCAGC 3 cut(s) 164, 285, 354
HaeIII GGCC 1 cut(s) 235
HapII CCGG 3 cut(s) 35, 51, 213
HgaI GACGC 2 cut(s) 186, 420
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 2 cut(s) 108, 257
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HpaII CCGG 3 cut(s) 35, 51, 213
HphI GGTGA 2 cut(s) 367, 426
Hpy166II GTNNAC 2 cut(s) 225, 346
Hpy188I TCNGA 5 cut(s) 70, 115, 168, 202, 307
Hpy188III TCNNGA 3 cut(s) 149, 300, 311
Hpy8I GTNNAC 2 cut(s) 225, 346
Hpy99I CGWCG 2 cut(s) 388, 400
HpyAV CCTTC 3 cut(s) 184, 285, 335
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 24, 69, 450
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 108, 257
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 6 cut(s) 79, 110, 302, 307, 313, 361
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 233, 393, 396
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 355, 432
MalI GATC 6 cut(s) 81, 112, 304, 309, 315, 363
MboI GATC 6 cut(s) 79, 110, 302, 307, 313, 361
MboII GAAGA 1 cut(s) 199
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 110, 302
MlsI TGGCCA 1 cut(s) 235
MluCI AATT 2 cut(s) 138, 295
MluNI TGGCCA 1 cut(s) 235
MnlI CCTC 8 cut(s) 19, 22, 64, 118, 187, 262, 326, 434
Mox20I TGGCCA 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 295
MscI TGGCCA 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 235
MspI CCGG 3 cut(s) 35, 51, 213
MspR9I CCNGG 3 cut(s) 51, 84, 438
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 2 cut(s) 84, 438
NciI CCSGG 1 cut(s) 51
NdeII GATC 6 cut(s) 79, 110, 302, 307, 313, 361
NlaIII CATG 2 cut(s) 108, 257
NlaIV GGNNCC 2 cut(s) 33, 165
NmuCI GTSAC 2 cut(s) 355, 432
NsbI TGCGCA 1 cut(s) 261
PaqCI CACCTGC 2 cut(s) 50, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 295
PkrI GCNGC 5 cut(s) 103, 248, 280, 408, 411
Psp6I CCWGG 2 cut(s) 82, 436
PspFI CCCAGC 3 cut(s) 160, 281, 350
PspGI CCWGG 2 cut(s) 82, 436
PspN4I GGNNCC 2 cut(s) 33, 165
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 2 cut(s) 110, 302
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 5 cut(s) 102, 247, 279, 407, 410
Sau3AI GATC 6 cut(s) 79, 110, 302, 307, 313, 361
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 51, 84, 438
SetI ASST 8 cut(s) 33, 64, 159, 248, 267, 273, 343, 439
SinI GGWCC 1 cut(s) 164
Sse9I AATT 2 cut(s) 138, 295
SsiI CCGC 5 cut(s) 54, 101, 128, 278, 401
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 49, 82, 436
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 138, 295
TauI GCSGC 2 cut(s) 104, 281
TseFI GTSAC 2 cut(s) 355, 432
TseI GCWGC 3 cut(s) 246, 406, 409
Tsp45I GTSAC 2 cut(s) 355, 432
TspDTI ATGAA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.