RLG00000036414
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017006
Physical Location & Seq
Forward (+)
80277148 .. 80282652
5505 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036414

Sequence Viewer

Length: 1053 bp
ATGTCACTGGTGGTGTGGTTTTGGTATGCTGCAGCAGCCTGCAGCATATTCATCTCTGGGTTTGTTGCACGGGCTCAACCCACCACAGATCCCTCTGAAGGCTTAATTTGCTTGTTATTGAATGAATGCGGGATGAGGGGTATTGTTGCAGTGCTTGGAGCACTCTCTCCTGTCTTTGATGGAAAAGGTGAGAGCGCTGAATGCAATCTTTCAGAAATGGAATATTACGGCCAATACAAAGCAATGGAACACAACTGGGACTTGGGACACAACGACTTATCAGGGGAACTACCAAAGGAAATTGAAAAACTCACCAATTTGACATTCTTGGGTGTTGGGACACTCAACCTTTCTGGTTCTCTGCCTCCTGAGATGGGGTATTTAAAAACATTAAAAGAGATTTACATTGATAATTCTGGACTTAGCGGTGAGATTCCACCAACATTTGCTAATCTAACAAACTTGGAAATATTTTGGGCAACAGATATAAACCTCACTGGCAGGATACCGGACTTCGTAGGAGATTGGACAAAGCTTACTAAATTGAGGTTTCAGGGAAACTCTTTTGAAGGTTCCATACCATCTTCACTGTCCAGGTTGACTCTTTTGACAGAGCTGCGAATTACTGATTTAACAATTGCCAATGACAACTCTTCTCTTGGATTTATCAACAATATGACGTCTCTACAAGTCTTAATGCTGAGGAATAACAATATTTCTGATTCAATTCCTTCCAACATTGGAGATTACCGAAAATTGGTTCACCTGGATAGGCAGTTGGTGGAGGTCTTGACGATAGGGAGGGCATTCAAGACCCTGGGGACCAGTGGTGGAGAGTATTGGAAGAAGATTAGAGGATCCAGTGTGGTAAGGAGGAGGTTGGAAGGGATAGTGGGAAGAGGTGGCAAAAAGCAAGAGAGGTTACTTAGTTCAGGTGACTCAAGTCAAGGACAAAAAGGAGGTTCTGGGGTTGGAGACTTGGAGAGCATGGAGGTTGTTTCTATTCTGCTTGTTTCCGATAAACTTGATAGGAGAGTGTTCATTGTTCAGTAG

Protein Analysis

351

Amino Acids

38.37

Weight (kDa)

5.44

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 99 - 209 1.6e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 683
AciI CCGC 2 cut(s) 129, 426
AclWI GGATC 3 cut(s) 83, 852, 865
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 680
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 98, 374, 757
AgsI TTSAA 5 cut(s) 121, 305, 569, 726, 811
AjnI CCWGG 3 cut(s) 593, 765, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 2 cut(s) 535, 616
AluI AGCT 2 cut(s) 535, 616
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 687, 969
AlwI GGATC 3 cut(s) 83, 852, 865
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 5 cut(s) 29, 32, 35, 42, 616
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 5 cut(s) 200, 304, 440, 755, 947
AvaII GGWCC 1 cut(s) 822
BamHI GGATCC 1 cut(s) 857
BanII GRGCYC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
Bbv12I GWGCWC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 701
BbvI GCAGC 5 cut(s) 16, 44, 47, 54, 603
BccI CCATC 3 cut(s) 173, 367, 589
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 3 cut(s) 595, 767, 818
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 687, 969
BfmI CTRYAG 2 cut(s) 30, 40
BfoI RGCGCY 1 cut(s) 198
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 5 cut(s) 30, 33, 36, 43, 617
BlsI GCNGC 5 cut(s) 31, 34, 37, 44, 618
Bme1390I CCNGG 3 cut(s) 595, 767, 818
Bme18I GGWCC 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 574, 823, 859
BmrFI CCNGG 3 cut(s) 595, 767, 818
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BoxI GACNNNNGTC 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 925
BsaHI GRCGYC 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 816, 817
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 374, 757
Bse1I ACTGG 5 cut(s) 12, 260, 502, 825, 861
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 3 cut(s) 595, 767, 818
BseDI CCNNGG 2 cut(s) 816, 817
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 98, 374, 757
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 360, 692
BseNI ACTGG 5 cut(s) 12, 260, 502, 825, 861
BseRI GAGGAG 1 cut(s) 889
BseXI GCAGC 5 cut(s) 16, 44, 47, 54, 603
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 4 cut(s) 272, 279, 352, 835
BslI CCNNNNNNNGG 3 cut(s) 98, 374, 757
BsmAI GTCTC 2 cut(s) 687, 969
BsmBI CGTCTC 1 cut(s) 687
BsmFI GGGAC 4 cut(s) 272, 279, 352, 835
BsmI GAATGC 3 cut(s) 131, 206, 806
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 76, 163
Bsp143I GATC 2 cut(s) 88, 857
BspACI CCGC 2 cut(s) 129, 426
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 361, 693
BspLI GGNNCC 3 cut(s) 574, 823, 859
BspMAI CTGCAG 2 cut(s) 34, 44
BspPI GGATC 3 cut(s) 83, 852, 865
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 5 cut(s) 12, 260, 502, 825, 861
BssECI CCNNGG 2 cut(s) 816, 817
BssMI GATC 2 cut(s) 88, 857
BssNI GRCGYC 1 cut(s) 680
Bst2UI CCWGG 3 cut(s) 595, 767, 818
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 2 cut(s) 658, 892
BstACI GRCGYC 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 4 cut(s) 369, 422, 701, 926
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 91, 860
BstMAI GTCTC 2 cut(s) 687, 969
BstMBI GATC 2 cut(s) 88, 857
BstMWI GCNNNNNNNGC 3 cut(s) 35, 108, 201
BstNI CCWGG 3 cut(s) 595, 767, 818
BstPAI GACNNNNGTC 1 cut(s) 942
BstSCI CCNGG 3 cut(s) 593, 765, 816
BstSFI CTRYAG 2 cut(s) 30, 40
BstV1I GCAGC 5 cut(s) 16, 44, 47, 54, 603
BstX2I RGATCY 2 cut(s) 88, 857
BstYI RGATCY 2 cut(s) 88, 857
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 6 cut(s) 5, 156, 495, 587, 832, 868
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 822
CviAII CATG 1 cut(s) 988
CviJI RGCY 6 cut(s) 38, 74, 102, 231, 535, 616
CviKI_1 RGCY 6 cut(s) 38, 74, 102, 231, 535, 616
DdeI CTNAG 4 cut(s) 369, 422, 701, 926
DpnI GATC 2 cut(s) 90, 859
DpnII GATC 2 cut(s) 88, 857
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 658, 892
EarI CTCTTC 2 cut(s) 658, 892
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 822
Eco47III AGCGCT 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 593, 765, 816
EcoT38I GRGCYC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 687
FaeI CATG 1 cut(s) 991
FaiI YATR 6 cut(s) 27, 47, 488, 578, 677, 989
FaqI GGGAC 4 cut(s) 272, 279, 352, 835
FatI CATG 1 cut(s) 987
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 5 cut(s) 30, 33, 36, 43, 617
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 5 cut(s) 30, 33, 36, 43, 617
GlaI GCGC 1 cut(s) 196
GluI GCNGC 5 cut(s) 30, 33, 36, 43, 617
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 509
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 1 cut(s) 991
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 433, 601, 722, 938
HpaII CCGG 1 cut(s) 509
HphI GGTGA 5 cut(s) 200, 304, 440, 755, 947
Hpy166II GTNNAC 2 cut(s) 600, 763
Hpy188I TCNGA 4 cut(s) 97, 214, 721, 1018
Hpy188III TCNNGA 4 cut(s) 368, 417, 790, 811
Hpy8I GTNNAC 2 cut(s) 600, 763
HpyAV CCTTC 4 cut(s) 92, 563, 741, 878
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 5 cut(s) 32, 42, 68, 149, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 108, 201
HpyF3I CTNAG 4 cut(s) 369, 422, 701, 926
HpySE526I ACGT 1 cut(s) 680
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 1 cut(s) 991
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 88, 857
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 5 cut(s) 16, 44, 47, 54, 603
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 3 cut(s) 3, 921, 935
MalI GATC 2 cut(s) 90, 859
MboI GATC 2 cut(s) 88, 857
MboII GAAGA 5 cut(s) 576, 645, 856, 859, 909
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 2 cut(s) 88, 857
MhlI GDGCHC 2 cut(s) 76, 163
MluCI AATT 9 cut(s) 105, 300, 316, 412, 542, 621, 636, 726, 755
MlyI GAGTC 2 cut(s) 595, 932
MmeI TCCRAC 3 cut(s) 759, 861, 952
MseI TTAA 5 cut(s) 104, 383, 392, 632, 695
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 3 cut(s) 595, 767, 818
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 3 cut(s) 131, 206, 806
MvaI CCWGG 3 cut(s) 595, 767, 818
MwoI GCNNNNNNNGC 3 cut(s) 35, 108, 201
NdeII GATC 2 cut(s) 88, 857
NlaIII CATG 1 cut(s) 991
NlaIV GGNNCC 3 cut(s) 574, 823, 859
NmuCI GTSAC 2 cut(s) 3, 935
PasI CCCWGGG 1 cut(s) 817
PctI GAATGC 3 cut(s) 131, 206, 806
PfeI GAWTC 2 cut(s) 433, 722
PkrI GCNGC 5 cut(s) 31, 34, 37, 44, 618
PleI GAGTC 2 cut(s) 595, 932
PpsI GAGTC 2 cut(s) 595, 932
PshAI GACNNNNGTC 1 cut(s) 942
Psp6I CCWGG 3 cut(s) 593, 765, 816
PspGI CCWGG 3 cut(s) 593, 765, 816
PspN4I GGNNCC 3 cut(s) 574, 823, 859
PspPI GGNCC 1 cut(s) 822
PstI CTGCAG 2 cut(s) 34, 44
PsuI RGATCY 2 cut(s) 88, 857
SaqAI TTAA 5 cut(s) 104, 383, 392, 632, 695
SatI GCNGC 5 cut(s) 30, 33, 36, 43, 617
Sau3AI GATC 2 cut(s) 88, 857
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 2 cut(s) 595, 932
ScrFI CCNGG 3 cut(s) 595, 767, 818
SduI GDGCHC 2 cut(s) 76, 163
SfcI CTRYAG 2 cut(s) 30, 40
SinI GGWCC 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
Sse9I AATT 9 cut(s) 105, 300, 316, 412, 542, 621, 636, 726, 755
SsiI CCGC 2 cut(s) 129, 426
SspI AATATT 3 cut(s) 224, 471, 715
StyD4I CCNGG 3 cut(s) 593, 765, 816
TaaI ACNGT 1 cut(s) 591
TaiI ACGT 1 cut(s) 683
TasI AATT 9 cut(s) 105, 300, 316, 412, 542, 621, 636, 726, 755
TfiI GAWTC 2 cut(s) 433, 722
Tru1I TTAA 5 cut(s) 104, 383, 392, 632, 695
Tru9I TTAA 5 cut(s) 104, 383, 392, 632, 695
TscAI CASTG 6 cut(s) 12, 156, 502, 594, 832, 868
TseFI GTSAC 2 cut(s) 3, 935
TseI GCWGC 5 cut(s) 29, 32, 35, 42, 616
Tsp45I GTSAC 2 cut(s) 3, 935
TspDTI ATGAA 3 cut(s) 40, 138, 1030
TspRI CASTG 6 cut(s) 12, 156, 502, 594, 832, 868
VpaK11BI GGWCC 1 cut(s) 822
ZraI GACGTC 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.