Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017006

Physical Location & Seq

Genomic Coordinates Reverse (-)

56906696 .. 56919466

Gene Structure 12771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATACGCTTGCCACTTTGGATGAGATGAAGTCCATGATGGTAGATGCCTCAGTAGTTGTTACCAGTACAGTGCTTGCACTCGCATTCTTCGGCTTGAGGGGACGCACGAAGGAGTTGAGGATCAAGGGAGGCTTACTCAAGTGGCTGCGGTATCTCTCTCTAATTGTGTGCGAGTATGCAGGTGTTCAAAACAAGCTTATCAACTTGGACGAGAACATTTATATTCCTGTCACCAGAGCAGAGTTTGCTGTTCTCAACTCTGCTTTCAATGGAATTCTAGTTTTGAAGGATTTTGATATACGAAAGGGAGCAGGTGGGAAATCTTTGCAATCCGTTCAGAAGGAATATAAGGCCCAGGTTTCACAGAACTACCTTGAAATTCATCTCTTTTGGGCTGGAAAGGGGACTTGCTGCGTACCTGATTTTGGTACTTATGGACCTGTTATTTCGGCCATCAGTGCTACACCAGATTTCCCACCTACTATCGTTCTGAACCATCCAACTTGTAAGAAGAATAGGATGGGGCTGATTCTGGGGATTGTTGTTGGTGGTGGAATTTGCTCGAGTATTGTCATTGGCAATGCATATTGGAGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

200

Amino Acids

21.88

Weight (kDa)

9.1

Isoelectric Point (pI)

18.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	89 - 153	2.4e-13	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083691
rosa_laevigata	RLG00000036414
rosa_samantha	Rh1CG328600 Rh1DG345500 Rh2AG308800 Rh2DG562700 Rh4AG369100 Rh5AG482900 Rh5AG483400 Rh5AG483800 Rh5BG504300 Rh5DG516500 Rh6BG042300 Rh6BG098900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	173, 305
Acc36I	ACCTGC	2 cut(s)	173, 305
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	3 cut(s)	276, 381, 558
AfaI	GTAC	3 cut(s)	70, 420, 433
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	191, 271, 289, 380
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	354, 453
ApeKI	GCWGC	2 cut(s)	148, 414
ApoI	RAATTY	3 cut(s)	276, 381, 558
AspS9I	GGNCC	2 cut(s)	355, 440
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	135, 401
BccI	CCATC	4 cut(s)	34, 464, 507, 517
BciT130I	CCWGG	1 cut(s)	359
BfaI	CTAG	1 cut(s)	281
BfuAI	ACCTGC	2 cut(s)	173, 305
BisI	GCNGC	2 cut(s)	149, 415
BlsI	GCNGC	2 cut(s)	150, 416
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	355, 440
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpuEI	CTTGAG	2 cut(s)	118, 125
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	28, 499, 528
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	135, 401
BshFI	GGCC	2 cut(s)	356, 455
BsiHKCI	CYCGRG	1 cut(s)	565
BslFI	GGGAC	2 cut(s)	117, 421
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	117, 421
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	356, 455
BsoBI	CYCGRG	1 cut(s)	565
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	356, 455
BspCNI	CTCAG	1 cut(s)	65
BspMI	ACCTGC	2 cut(s)	173, 305
BspPI	GGATC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	12, 78
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	28, 499, 528
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 461
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	135, 401
BsuRI	GGCC	2 cut(s)	356, 455
BtsCI	GGATG	3 cut(s)	28, 499, 528
BtsIMutI	CAGTG	2 cut(s)	78, 466
BveI	ACCTGC	2 cut(s)	173, 305
Cac8I	GCNNGC	2 cut(s)	12, 78
Cfr13I	GGNCC	2 cut(s)	355, 440
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	69, 419, 432
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	8 cut(s)	96, 135, 148, 199, 356, 398, 455, 529
CviKI_1	RGCY	8 cut(s)	96, 135, 148, 199, 356, 398, 455, 529
CviQI	GTAC	3 cut(s)	69, 419, 432
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	589
FaeI	CATG	1 cut(s)	40
FaiI	YATR	7 cut(s)	38, 180, 225, 302, 351, 438, 589
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	117, 421
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	149, 415
FokI	GGATG	3 cut(s)	35, 486, 535
Fsp4HI	GCNGC	2 cut(s)	149, 415
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	2 cut(s)	149, 415
HaeIII	GGCC	2 cut(s)	356, 455
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	532
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	342, 495
HpyAV	CCTTC	3 cut(s)	106, 283, 337
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	80, 182, 331, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 461
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	135, 401
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	61, 232
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	82, 526
MluCI	AATT	4 cut(s)	165, 276, 381, 558
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	5 cut(s)	61, 93, 114, 125, 588
Mph1103I	ATGCAT	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	248, 461
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	589
PaeR7I	CTCGAG	1 cut(s)	565
PaqCI	CACCTGC	2 cut(s)	173, 305
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	150, 416
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	355, 440
PspXI	VCTCGAGB	1 cut(s)	565
RsaI	GTAC	3 cut(s)	70, 420, 433
RsaNI	GTAC	3 cut(s)	69, 419, 432
SatI	GCNGC	2 cut(s)	149, 415
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	355, 440
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	8 cut(s)	187, 201, 319, 363, 378, 424, 445, 484
SfaNI	GCATC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	565
SmlI	CTYRAG	3 cut(s)	97, 140, 565
SmoI	CTYRAG	3 cut(s)	97, 140, 565
Sse9I	AATT	4 cut(s)	165, 276, 381, 558
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	566
TasI	AATT	4 cut(s)	165, 276, 381, 558
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	532
TscAI	CASTG	2 cut(s)	78, 466
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	148, 414
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	44, 374
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	78, 466
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	3 cut(s)	276, 381, 558
XhoI	CTCGAG	1 cut(s)	565
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.