Rh6BG042300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017006
Physical Location & Seq
Forward (+)
6856164 .. 6856558
395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG042300.1

Sequence Viewer

Length: 351 bp
ATGCCCGTCATTCTTGGTCATTCAACACATTCACTTAGATACTATGGCTTGGGGCTGGAAAATGGTGTCTACACAGTCAAACTCCAGTTTGCAGAACAACAAATCCTAGATACTCCAAGGAAAAATCTTGGGAGACGTGGAATTCTAGTTTCGAAGGATTTTGATATACGAAAGGAGGCAGGTGGGAAATCTTTGCAAGCCGTTCAGAAGGAATACAAGGCCCTAGCTCACACAACTACCTTGAAATTAATCTCTTTTGGGCTGGAAAGGGGACTTGCTGCGTACCTGAGGTTGGTACTTATGGACCTGTTATTTCAGCCATCAGTGCTACACCGGCTAATAACAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

9.92

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 7 - 76 2.6e-10 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 2 cut(s) 284, 297
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 2 cut(s) 24, 244
AjiI CACGTC 1 cut(s) 137
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 127
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 141
AseI ATTAAT 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 220, 304
AsuII TTCGAA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 287
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 3 cut(s) 107, 146, 224
BfuAI ACCTGC 1 cut(s) 170
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 220, 304
BpmI CTGGAG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 221
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 152
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 35, 287
BstMAI GTCTC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 325, 334
BstV1I GCAGC 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 221
BtrI CACGTC 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 220, 304
Csp6I GTAC 2 cut(s) 283, 296
CviJI RGCY 8 cut(s) 48, 55, 200, 221, 227, 262, 319, 337
CviKI_1 RGCY 8 cut(s) 48, 55, 200, 221, 227, 262, 319, 337
CviQI GTAC 2 cut(s) 283, 296
DdeI CTNAG 2 cut(s) 35, 287
Eco130I CCWWGG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 127
FaiI YATR 4 cut(s) 45, 167, 302, 349
FaqI GGGAC 1 cut(s) 285
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 3 cut(s) 107, 146, 224
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 334
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 148, 202
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 92, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 334
HpyF3I CTNAG 2 cut(s) 35, 287
HpySE526I ACGT 1 cut(s) 136
LpnPI CCDG 7 cut(s) 41, 98, 165, 248, 299, 320, 347
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 3 cut(s) 107, 146, 224
MaeII ACGT 1 cut(s) 136
MluCI AATT 2 cut(s) 141, 245
MnlI CCTC 2 cut(s) 169, 282
MseI TTAA 1 cut(s) 248
MspI CCGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 325, 334
NspV TTCGAA 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 248
PspPI GGNCC 2 cut(s) 220, 304
RsaI GTAC 2 cut(s) 284, 297
RsaNI GTAC 2 cut(s) 283, 296
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 220, 304
SetI ASST 7 cut(s) 139, 184, 229, 242, 288, 293, 309
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 304
Sse9I AATT 2 cut(s) 141, 245
SspMI CTAG 3 cut(s) 107, 146, 224
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 141, 245
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 278
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 304
VspI ATTAAT 1 cut(s) 248
XapI RAATTY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 3 cut(s) 107, 146, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.