Rh5AG483800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017006
Physical Location & Seq
Forward (+)
82756919 .. 82758158
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG483800.1

Sequence Viewer

Length: 324 bp
ATGGGCTTCATGAAAATGGTTGGGATCCCAAGTATTCCTAGAGGTTCAGGTTGGAGCCCATGGACAGATTATCTGAATTCAATGAGGAAGAAGCAAGACGAACGACCAATGCAGGACTTTTGTGCACTCGATCATCACCAATCCTACAACCACCGTCTTGTTGGTCCGAATGCGTTCTGGAGATATCGAAGTGATGCCTGCTACTTCAAAGCCTGGTTACATGATCGACCACTGGAAGTACTGTCACCAGTCTATATATCAACTGATATGTCAACTAGAGGAATTCACTTCAGCTTTTACAACTCATCGGCAAATACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.53

Weight (kDa)

9.03

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 19, 32
AcsI RAATTY 2 cut(s) 76, 282
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 81, 208
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 2 cut(s) 294, 321
AluI AGCT 2 cut(s) 294, 321
Alw21I GWGCWC 1 cut(s) 127
Alw44I GTGCAC 1 cut(s) 123
AlwI GGATC 2 cut(s) 19, 32
ApaLI GTGCAC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 76, 282
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 128, 237
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 214
BfaI CTAG 2 cut(s) 39, 276
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 26, 56
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 237, 248
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 237, 248
BseSI GKGCMC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 59, 127
Bsp143I GATC 3 cut(s) 24, 130, 223
Bsp19I CCATGG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 26, 56
BspPI GGATC 2 cut(s) 19, 32
BsrI ACTGG 2 cut(s) 237, 248
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 3 cut(s) 24, 130, 223
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 155, 243
BstC8I GCNNGC 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 59
BstKTI GATC 3 cut(s) 27, 133, 226
BstMBI GATC 3 cut(s) 24, 130, 223
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 199
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 239
CviAII CATG 3 cut(s) 10, 60, 221
CviJI RGCY 5 cut(s) 6, 57, 212, 294, 321
CviKI_1 RGCY 5 cut(s) 6, 57, 212, 294, 321
CviQI GTAC 1 cut(s) 239
DpnI GATC 3 cut(s) 26, 132, 225
DpnII GATC 3 cut(s) 24, 130, 223
Eco130I CCWWGG 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 274
EcoRI GAATTC 2 cut(s) 76, 282
EcoRII CCWGG 1 cut(s) 212
EcoRV GATATC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 13, 63, 224
FaiI YATR 6 cut(s) 11, 61, 222, 255, 257, 269
FatI CATG 3 cut(s) 9, 59, 220
FriOI GRGCYC 1 cut(s) 59
FspBI CTAG 2 cut(s) 39, 276
GsuI CTGGAG 1 cut(s) 199
Hin1II CATG 3 cut(s) 13, 63, 224
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HphI GGTGA 2 cut(s) 128, 237
Hpy166II GTNNAC 2 cut(s) 125, 273
Hpy188I TCNGA 2 cut(s) 75, 168
Hpy188III TCNNGA 2 cut(s) 10, 178
Hpy8I GTNNAC 2 cut(s) 125, 273
HpyCH4III ACNGT 2 cut(s) 155, 243
HpyCH4V TGCA 2 cut(s) 112, 125
Hsp92II CATG 3 cut(s) 13, 63, 224
Kzo9I GATC 3 cut(s) 24, 130, 223
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 33, 98, 163, 199, 211, 218, 226, 261
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 39, 276
MaeIII GTNAC 2 cut(s) 216, 243
MalI GATC 3 cut(s) 26, 132, 225
MboI GATC 3 cut(s) 24, 130, 223
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 59, 127
MluCI AATT 2 cut(s) 76, 282
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 3 cut(s) 35, 78, 272
MroXI GAANNNNTTC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 59
NdeII GATC 3 cut(s) 24, 130, 223
NlaIII CATG 3 cut(s) 13, 63, 224
NlaIV GGNNCC 2 cut(s) 26, 56
NmuCI GTSAC 1 cut(s) 243
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 26, 56
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 24
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 14
Sau3AI GATC 3 cut(s) 24, 130, 223
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 2 cut(s) 59, 127
SetI ASST 4 cut(s) 46, 52, 296, 323
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 76, 282
SspMI CTAG 2 cut(s) 39, 276
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 155, 243
TaqI TCGA 3 cut(s) 129, 187, 226
TasI AATT 2 cut(s) 76, 282
TatI WGTACW 1 cut(s) 238
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 237
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 2 cut(s) 76, 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 39, 276
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.