Rh5DG516500

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017006
Physical Location & Seq
Forward (+)
80281201 .. 80282427
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG516500.1

Sequence Viewer

Length: 345 bp
ATGATTAACTGCGGTGGTCCTGAGACTACGTTATCCAATGGAACTGTGTATGAGACGGACACTGAGCCCCTTGGTCCAGCTACATATTATGTGACTGACACAAACAGATGGGGAGTTAGCAATGACGTTCTTGTTGTTAAAGATTTTGATATACGAAACGAGACAAATAGGACATCTTTGCTAGCTATTGAAAAGGTATACAAGGCTCAGGTGGTTTCAGAGAATTACCTTGAAATCCATTTCTTCTGGGCTGGAAAGGGGACTTGCTGCATACCAGAGGAGGGTACATATGGACCTCTTATTTCAGCCATCAGTGCTACACCTGGTAAAGTATATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

4.49

Isoelectric Point (pI)

18.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 41 - 104 5.5e-11 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 12
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 191, 233
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 2 cut(s) 80, 185
AluI AGCT 2 cut(s) 80, 185
Alw26I GTCTC 3 cut(s) 17, 47, 155
ApeKI GCWGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 17, 74, 293
AsuNHI GCTAGC 1 cut(s) 181
AvaII GGWCC 3 cut(s) 17, 74, 293
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 102, 317
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 3 cut(s) 17, 47, 155
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 3 cut(s) 17, 74, 293
BmgT120I GGNCC 3 cut(s) 17, 74, 293
BmrFI CCNGG 1 cut(s) 324
BmtI GCTAGC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 12, 54, 221
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 254
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 17, 47, 155
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 69
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 3 cut(s) 13, 55, 220
BspOI GCTAGC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 70
BssNAI GTATAC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 21, 63, 207
BstMAI GTCTC 3 cut(s) 17, 47, 155
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 254
BstZ17I GTATAC 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 60, 319
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 17, 74, 293
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 1 cut(s) 285
CviJI RGCY 6 cut(s) 67, 80, 185, 206, 251, 308
CviKI_1 RGCY 6 cut(s) 67, 80, 185, 206, 251, 308
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 21, 63, 207
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 3 cut(s) 17, 74, 293
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 47
FaqI GGGAC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 29, 126
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 21, 63, 207
HpySE526I ACGT 2 cut(s) 29, 126
LpnPI CCDG 8 cut(s) 33, 90, 194, 232, 237, 288, 309, 336
Lsp1109I GCAGC 1 cut(s) 254
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 29, 126
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 2 cut(s) 223, 340
MnlI CCTC 3 cut(s) 271, 274, 306
MseI TTAA 3 cut(s) 6, 138, 343
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeI CATATG 1 cut(s) 289
NheI GCTAGC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspPI GGNCC 3 cut(s) 17, 74, 293
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 6, 138, 343
SatI GCNGC 1 cut(s) 268
Sau96I GGNCC 3 cut(s) 17, 74, 293
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 69
SetI ASST 9 cut(s) 32, 82, 129, 187, 198, 213, 231, 298, 325
SexAI ACCWGGT 1 cut(s) 322
SinI GGWCC 3 cut(s) 17, 74, 293
Sse9I AATT 2 cut(s) 223, 340
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 32, 129
TasI AATT 2 cut(s) 223, 340
Tru1I TTAA 3 cut(s) 6, 138, 343
Tru9I TTAA 3 cut(s) 6, 138, 343
TscAI CASTG 2 cut(s) 67, 319
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 67, 319
VpaK11BI GGWCC 3 cut(s) 17, 74, 293
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.