Rh2AG308800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017006
Physical Location & Seq
Forward (+)
39222573 .. 39246940
24368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG308800.1

Sequence Viewer

Length: 408 bp
ATGGAAGATGGGAGCCTCAGACAGTATGACGTTTGCCATGAATACATGTATGATAATTCATTATGGTCTACTTTGGCAGTTACTTGGATAGTTCTGGAGTTAGCGGGAATTCTAGTTTTGAAGGATTTTGATATACGAAAGGAAGCAGGTGGGAAATCTTTGCAAGCCGTTCCGAAGGAATATAAGGCCCAGGTTTCACAGAACTACCTTGAAATTCATCTCTTTTGGGCTGGAAAGGGGACTTGCTGCGTACCTGAGGTTGGTACTTATGGACCTGTTATTTCAGCCATCAGTGCTACACCAGGGCCACAATGCTCCCTAAGAATGACTCAGTATATCTTGTCGAAGCCTAGGTTTGGGGTTGTTCCTAGTATTGATAAGGAAACTCCCTATACACTGGTCGTCTAG

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

5.63

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 36 - 97 2.8e-13 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 68
AciI CCGC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 108, 213
AfaI GTAC 2 cut(s) 252, 265
AfiI CCNNNNNNNGG 2 cut(s) 260, 356
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 121, 212
AjnI CCWGG 2 cut(s) 189, 301
AoxI GGCC 2 cut(s) 186, 305
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 2 cut(s) 108, 213
AspA2I CCTAGG 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 187, 272, 305
AvaII GGWCC 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 2, 296
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 191, 303
BfaI CTAG 4 cut(s) 113, 351, 369, 406
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 247
BlnI CCTAGG 1 cut(s) 350
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 191, 303
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 187, 272, 305
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 2 cut(s) 191, 303
BpmI CTGGAG 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 189, 302, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 356
Bse1I ACTGG 1 cut(s) 402
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 191, 303
BseDI CCNNGG 3 cut(s) 189, 302, 350
BseLI CCNNNNNNNGG 2 cut(s) 260, 356
BseMII CTCAG 3 cut(s) 31, 246, 344
BseNI ACTGG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 188, 307
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 260, 356
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 2 cut(s) 188, 307
BspACI CCGC 1 cut(s) 104
BspANI GGCC 2 cut(s) 188, 307
BspCNI CTCAG 3 cut(s) 30, 247, 343
BspLI GGNNCC 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 189, 302, 350
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 191, 303
Bst4CI ACNGT 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 17, 255, 320, 330
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 2 cut(s) 191, 303
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 189, 301
BstV1I GCAGC 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 188, 307
BtsIMutI CAGTG 2 cut(s) 298, 395
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 187, 272, 305
Csp6I GTAC 2 cut(s) 251, 264
CviAII CATG 2 cut(s) 38, 46
CviJI RGCY 7 cut(s) 15, 167, 188, 230, 287, 307, 349
CviKI_1 RGCY 7 cut(s) 15, 167, 188, 230, 287, 307, 349
CviQI GTAC 2 cut(s) 251, 264
DdeI CTNAG 4 cut(s) 17, 255, 320, 330
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 189, 301
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 41, 49
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 37, 45
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 4 cut(s) 113, 351, 369, 406
GluI GCNGC 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 2 cut(s) 188, 307
Hin1II CATG 2 cut(s) 41, 49
HinfI GANTC 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 20, 174
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 115, 169
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 17, 255, 320, 330
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 41, 49
LmnI GCTCC 2 cut(s) 12, 320
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 4 cut(s) 113, 351, 369, 406
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 1 cut(s) 17
MluCI AATT 3 cut(s) 55, 108, 213
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 2 cut(s) 26, 250
MspR9I CCNGG 2 cut(s) 191, 303
MvaI CCWGG 2 cut(s) 191, 303
MwoI GCNNNNNNNGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 41, 49
NlaIV GGNNCC 1 cut(s) 14
NspI RCATGY 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 137
PciI ACATGT 1 cut(s) 45
PkrI GCNGC 1 cut(s) 248
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PscI ACATGT 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 189, 301
PspGI CCWGG 2 cut(s) 189, 301
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 187, 272, 305
RsaI GTAC 2 cut(s) 252, 265
RsaNI GTAC 2 cut(s) 251, 264
SatI GCNGC 1 cut(s) 247
Sau96I GGNCC 3 cut(s) 187, 272, 305
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 191, 303
SetI ASST 8 cut(s) 33, 151, 195, 210, 256, 261, 277, 356
SinI GGWCC 1 cut(s) 272
Sse9I AATT 3 cut(s) 55, 108, 213
SsiI CCGC 1 cut(s) 104
SspMI CTAG 4 cut(s) 113, 351, 369, 406
StyD4I CCNGG 2 cut(s) 189, 301
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 55, 108, 213
TscAI CASTG 2 cut(s) 298, 402
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 3 cut(s) 48, 54, 206
TspRI CASTG 2 cut(s) 298, 402
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 108, 213
XceI RCATGY 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 4 cut(s) 113, 351, 369, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.