Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017006

Physical Location & Seq

Genomic Coordinates Reverse (-)

67744499 .. 67745945

Gene Structure 1447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG369100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCGAACAACGCCGACCTAGGACACCTTCGAACTCTTACCGAAGACGCCGATGTCAGGGAAGTGGAGCATCGCAAACTCCCAATGCAACACCAACTGGGTCAAGCACCGGAACTTGATGTTACTGCCTTTAAGTTCTTTAACTATGTAGTACAGTCAGTGGCAAGCACGGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCATTTTGTGAGCCAAGGCTTTCAACCTAGGTACTCGGGGTGTTTCGATGCTTTAAACAAGATCGCCCGAGCAGAAGGTGTTGGAGGACTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

100

Amino Acids

11.14

Weight (kDa)

6.03

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	52 - 100	6.8e-06	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0083691
rosa_laevigata	RLG00000036414
rosa_samantha	Rh1CG328600 Rh1DG345500 Rh2AG308800 Rh2DG562700 Rh4AG369100 Rh5AG482900 Rh5AG483400 Rh5AG483800 Rh5BG504300 Rh5DG516500 Rh6BG042300 Rh6BG098900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	153, 239
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	241, 273
AspA2I	CCTAGG	2 cut(s)	19, 233
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	31
AvaI	CYCGRG	2 cut(s)	241, 273
AvrII	CCTAGG	2 cut(s)	19, 233
BbsI	GAAGAC	1 cut(s)	51
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	20, 234
BglII	AGATCT	1 cut(s)	175
BlnI	CCTAGG	2 cut(s)	19, 233
BmeT110I	CYCGRG	2 cut(s)	241, 273
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	79, 183, 244
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	19, 220, 233
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	19, 220, 233
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	102
BsiHKCI	CYCGRG	2 cut(s)	241, 273
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	57
BsoBI	CYCGRG	2 cut(s)	241, 273
Bsp119I	TTCGAA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	175, 267
BspT104I	TTCGAA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	19, 220, 233
BssMI	GATC	2 cut(s)	175, 267
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	19, 220, 233
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	166, 198
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	178, 270
BstMBI	GATC	2 cut(s)	175, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	166, 198
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	152, 238
CviJI	RGCY	2 cut(s)	219, 225
CviKI_1	RGCY	2 cut(s)	219, 225
CviQI	GTAC	2 cut(s)	152, 238
DpnI	GATC	2 cut(s)	177, 269
DpnII	GATC	2 cut(s)	175, 267
DraI	TTTAAA	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	19, 220, 233
Eco88I	CYCGRG	2 cut(s)	241, 273
EcoT14I	CCWWGG	3 cut(s)	19, 220, 233
ErhI	CCWWGG	3 cut(s)	19, 220, 233
FaiI	YATR	1 cut(s)	147
FokI	GGATG	1 cut(s)	205
FspBI	CTAG	2 cut(s)	20, 234
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	38, 275
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	88, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	175, 267
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	43, 83, 123
LweI	GCATC	3 cut(s)	79, 183, 244
MaeI	CTAG	2 cut(s)	20, 234
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	177, 269
MboI	GATC	2 cut(s)	175, 267
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	183, 284
MseI	TTAA	3 cut(s)	132, 141, 260
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	175, 267
NspV	TTCGAA	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	153, 239
RsaNI	GTAC	2 cut(s)	152, 238
SaqAI	TTAA	3 cut(s)	132, 141, 260
Sau3AI	GATC	2 cut(s)	175, 267
SetI	ASST	6 cut(s)	21, 30, 189, 235, 239, 286
SfaNI	GCATC	3 cut(s)	79, 183, 244
SfuI	TTCGAA	1 cut(s)	31
SspMI	CTAG	2 cut(s)	20, 234
StyI	CCWWGG	3 cut(s)	19, 220, 233
TaaI	ACNGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	31, 252
TatI	WGTACW	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	132, 141, 260
Tru9I	TTAA	3 cut(s)	132, 141, 260
TscAI	CASTG	1 cut(s)	165
TspRI	CASTG	1 cut(s)	165
XmaJI	CCTAGG	2 cut(s)	19, 233
XspI	CTAG	2 cut(s)	20, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.