Rh5AG483400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017006
Physical Location & Seq
Forward (+)
82712041 .. 82718079
6039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG483400.1

Sequence Viewer

Length: 333 bp
ATGTCACTGGTGGTGCGGTTTTGGTATGCTGCAGCAGCCTGCAGCATATTCATCTCTGGGTTTGTTGCACAGGCTCAACCCACCACAGATCCCTCTGAAGATTATAACTTCATGATTAACTGCGGTGGTCCTCAGACTACGTTATCCAATGGAACTGTGTATGAGACGGACACTGAGCCCCTTGGTCCAGCTACATATTATGTGACTGACACAAACAGATGGGGAGTTAGCAATGTTGGTCTTAAAACACAGTTTGTGGGTAATAGTTCTTCATTTTTGTTCTCCTCCATAAGGAGTTTGAAATATCTATACCAAGGAATTTACATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.14

Weight (kDa)

4.66

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AciI CCGC 2 cut(s) 16, 123
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 29, 32, 35, 42
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 128, 185
AvaII GGWCC 2 cut(s) 128, 185
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbvI GCAGC 4 cut(s) 16, 44, 47, 54
BccI CCATC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 30, 40
BisI GCNGC 4 cut(s) 30, 33, 36, 43
BlsI GCNGC 4 cut(s) 31, 34, 37, 44
Bme18I GGWCC 2 cut(s) 128, 185
BmgT120I GGNCC 2 cut(s) 128, 185
BsaJI CCNNGG 2 cut(s) 181, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 181, 313
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 146, 165
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 16, 44, 47, 54
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 16, 123
BspCNI CTCAG 2 cut(s) 145, 166
BspHI TCATGA 1 cut(s) 111
BspMAI CTGCAG 2 cut(s) 34, 44
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 181, 313
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 181, 313
Bst4CI ACNGT 2 cut(s) 157, 252
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 132, 174
BstENI CCTNNNNNAGG 1 cut(s) 289
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 30, 40
BstV1I GCAGC 4 cut(s) 16, 44, 47, 54
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 5, 171
Cac8I GCNNGC 1 cut(s) 40
CciI TCATGA 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 128, 185
CviAII CATG 2 cut(s) 112, 325
CviJI RGCY 4 cut(s) 38, 74, 178, 191
CviKI_1 RGCY 4 cut(s) 38, 74, 178, 191
DdeI CTNAG 2 cut(s) 132, 174
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 181, 313
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 128, 185
Eco57I CTGAAG 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 181, 313
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 181, 313
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 2 cut(s) 115, 328
FatI CATG 2 cut(s) 111, 324
Fnu4HI GCNGC 4 cut(s) 30, 33, 36, 43
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 4 cut(s) 30, 33, 36, 43
GluI GCNGC 4 cut(s) 30, 33, 36, 43
Hin1II CATG 2 cut(s) 115, 328
Hpy188I TCNGA 2 cut(s) 97, 135
Hpy188III TCNNGA 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 157, 252
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 32, 42, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 132, 174
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 2 cut(s) 115, 328
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 42, 52, 56, 201
Lsp1109I GCAGC 4 cut(s) 16, 44, 47, 54
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 3, 202
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 110, 261
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 318
MnlI CCTC 3 cut(s) 103, 141, 295
MseI TTAA 2 cut(s) 117, 243
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 115, 328
NmuCI GTSAC 2 cut(s) 3, 202
PagI TCATGA 1 cut(s) 111
PkrI GCNGC 4 cut(s) 31, 34, 37, 44
PsiI TTATAA 1 cut(s) 105
PspPI GGNCC 2 cut(s) 128, 185
PstI CTGCAG 2 cut(s) 34, 44
PsuI RGATCY 1 cut(s) 88
SaqAI TTAA 2 cut(s) 117, 243
SatI GCNGC 4 cut(s) 30, 33, 36, 43
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 128, 185
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 143, 193
SfcI CTRYAG 2 cut(s) 30, 40
SgeI CNNG 8 cut(s) 20, 51, 69, 83, 124, 194, 200, 326
SinI GGWCC 2 cut(s) 128, 185
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 16, 123
StyI CCWWGG 2 cut(s) 181, 313
TaaI ACNGT 2 cut(s) 157, 252
TaiI ACGT 1 cut(s) 143
TasI AATT 1 cut(s) 318
Tru1I TTAA 2 cut(s) 117, 243
Tru9I TTAA 2 cut(s) 117, 243
TscAI CASTG 2 cut(s) 12, 178
TseFI GTSAC 2 cut(s) 3, 202
TseI GCWGC 4 cut(s) 29, 32, 35, 42
Tsp45I GTSAC 2 cut(s) 3, 202
TspDTI ATGAA 3 cut(s) 40, 100, 261
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 12, 178
VpaK11BI GGWCC 2 cut(s) 128, 185
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.