Rh6BG098900

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017006
Physical Location & Seq
Reverse (-)
15371708 .. 15409781
38074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG098900.1

Sequence Viewer

Length: 657 bp
ATGACTACAAACATATTATTATGGCTGAAATCCAACATGGTGATGCATCAAAGGAATCAGAGTAGAATGTTCACCTGGGAACAACACTCCGGCCTCAGTCTAGGACGCCTGTCATTGACCTCAATATTTACGTCTATGACGAGCGCGAGATCGACGGCCTCAGGACCTTGTTATTTGGTAGGGATGGCGCCATTAACTCCATGCCAGCTCTTGCTTGAAAGGCCAGTGGGGCACTTAGACTACAACTTCATCATTAACTGCGGTGGTCCTCAGGCTACGATATCCAATGGGACTATGTATGAGAAGGGCATTGAGCCCCTTGGTCCAGCTACATATTATGTGACTGACACAAACAGATGGGGAGTTAGCAATGTCGGTCTTAAAACACAGTTTGATGTTCTTGTTGTTAAACATTTTGATATACGGAAGGAGACAAATAAGACATCTTTGCTAGCTATTGAAAAGGTATACAAGGCGCAGGTGGTTTCAGAGAATTACCTTGAAATCCATTTCTTCTGGGCTGGAAAGGGGACTTGCTGTATACTAGAGGAGGGTACTTATGGACCTCTTGTTTCAGCCATCAGTGCTACACCTGAATTCAAACCTACCATCAGCAACAAGCTGCCAAGTATAGTAAGAAGAATAGGACTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.18

Weight (kDa)

8.97

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 133 - 194 2.1e-08 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 187
AccI GTMKAC 2 cut(s) 468, 541
AccII CGCG 1 cut(s) 146
AciI CCGC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 596
AcyI GRCGYC 2 cut(s) 106, 188
AfaI GTAC 1 cut(s) 556
AgsI TTSAA 4 cut(s) 218, 461, 503, 601
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 4 cut(s) 208, 329, 455, 622
AluI AGCT 4 cut(s) 208, 329, 455, 622
Alw26I GTCTC 1 cut(s) 425
AoxI GGCC 3 cut(s) 91, 156, 221
ApeKI GCWGC 1 cut(s) 622
ApoI RAATTY 1 cut(s) 596
AspLEI GCGC 3 cut(s) 146, 190, 478
AspS9I GGNCC 4 cut(s) 164, 266, 323, 563
AsuHPI GGTGA 2 cut(s) 52, 64
AsuNHI GCTAGC 1 cut(s) 451
AvaII GGWCC 4 cut(s) 164, 266, 323, 563
AxyI CCTNAGG 2 cut(s) 160, 270
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 609
BccI CCATC 4 cut(s) 178, 351, 587, 617
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 3 cut(s) 101, 452, 545
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 469
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 1 cut(s) 623
BlsI GCNGC 1 cut(s) 624
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 4 cut(s) 164, 266, 323, 563
BmgT120I GGNCC 4 cut(s) 164, 266, 323, 563
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 33, 55
BmtI GCTAGC 1 cut(s) 455
BoxI GACNNNNGTC 1 cut(s) 109
BsaHI GRCGYC 2 cut(s) 106, 188
BsaJI CCNNGG 2 cut(s) 75, 319
Bse1I ACTGG 2 cut(s) 224, 654
Bse21I CCTNAGG 2 cut(s) 160, 270
Bse3DI GCAATG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 75, 319
BseGI GGATG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 3 cut(s) 109, 174, 284
BseNI ACTGG 2 cut(s) 224, 654
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 93, 158, 223
BshNI GGYRCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 304, 544
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 2 cut(s) 304, 544
BsnI GGCC 3 cut(s) 93, 158, 223
Bsp1286I GDGCHC 2 cut(s) 234, 318
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 1 cut(s) 261
BspANI GGCC 3 cut(s) 93, 158, 223
BspCNI CTCAG 3 cut(s) 108, 173, 283
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 2 cut(s) 224, 654
BssECI CCNNGG 2 cut(s) 75, 319
BssMI GATC 1 cut(s) 149
BssNAI GTATAC 2 cut(s) 469, 542
BssNI GRCGYC 2 cut(s) 106, 188
BssT1I CCWWGG 1 cut(s) 319
Bst1107I GTATAC 2 cut(s) 469, 542
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 390
BstACI GRCGYC 2 cut(s) 106, 188
BstC8I GCNNGC 2 cut(s) 206, 453
BstDEI CTNAG 4 cut(s) 95, 160, 235, 270
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 3 cut(s) 146, 190, 478
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 220, 229, 584
BstNI CCWGG 1 cut(s) 76
BstPAI GACNNNNGTC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 609
BstZ17I GTATAC 2 cut(s) 469, 542
Bsu36I CCTNAGG 2 cut(s) 160, 270
BsuRI GGCC 3 cut(s) 93, 158, 223
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 231, 589
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 206, 453
CfoI GCGC 3 cut(s) 146, 190, 478
Cfr13I GGNCC 4 cut(s) 164, 266, 323, 563
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 555
CviAII CATG 2 cut(s) 37, 201
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 95, 160, 235, 270
DinI GGCGCC 1 cut(s) 189
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 4 cut(s) 164, 266, 323, 563
Eco81I CCTNAGG 2 cut(s) 160, 270
EcoO109I RGGNCCY 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 74
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 40, 204
FaqI GGGAC 2 cut(s) 304, 544
FatI CATG 2 cut(s) 36, 200
FblI GTMKAC 2 cut(s) 468, 541
Fnu4HI GCNGC 1 cut(s) 623
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 623
FspBI CTAG 3 cut(s) 101, 452, 545
GlaI GCGC 3 cut(s) 145, 189, 477
GluI GCNGC 1 cut(s) 623
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 3 cut(s) 93, 158, 223
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 114
HhaI GCGC 3 cut(s) 146, 190, 478
Hin1I GRCGYC 2 cut(s) 106, 188
Hin1II CATG 2 cut(s) 40, 204
Hin6I GCGC 3 cut(s) 144, 188, 476
HinP1I GCGC 3 cut(s) 144, 188, 476
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 52, 64
Hpy166II GTNNAC 3 cut(s) 72, 469, 542
Hpy188I TCNGA 2 cut(s) 60, 490
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 3 cut(s) 72, 469, 542
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 298, 421
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 229, 584
HpyF3I CTNAG 4 cut(s) 95, 160, 235, 270
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 2 cut(s) 106, 188
Hsp92II CATG 2 cut(s) 40, 204
HspAI GCGC 3 cut(s) 144, 188, 476
KasI GGCGCC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 2 cut(s) 33, 55
MaeI CTAG 3 cut(s) 101, 452, 545
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 2 cut(s) 505, 651
MhlI GDGCHC 2 cut(s) 234, 318
MluCI AATT 2 cut(s) 493, 596
Mly113I GGCGCC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 7 cut(s) 104, 130, 169, 279, 541, 544, 576
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 4 cut(s) 194, 255, 381, 408
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 220, 229, 584
NarI GGCGCC 1 cut(s) 188
NdeII GATC 1 cut(s) 149
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 2 cut(s) 40, 204
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 624
PluTI GGCGCC 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 164
PshAI GACNNNNGTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 4 cut(s) 164, 266, 323, 563
PspPPI RGGWCCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 4 cut(s) 194, 255, 381, 408
SatI GCNGC 1 cut(s) 623
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 4 cut(s) 164, 266, 323, 563
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 234, 318
SfaNI GCATC 2 cut(s) 33, 55
SfoI GGCGCC 1 cut(s) 189
SinI GGWCC 4 cut(s) 164, 266, 323, 563
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 2 cut(s) 493, 596
SsiI CCGC 1 cut(s) 261
SspDI GGCGCC 1 cut(s) 187
SspI AATATT 1 cut(s) 126
SspMI CTAG 3 cut(s) 101, 452, 545
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 1 cut(s) 365
TasI AATT 2 cut(s) 493, 596
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 4 cut(s) 194, 255, 381, 408
Tru9I TTAA 4 cut(s) 194, 255, 381, 408
TscAI CASTG 2 cut(s) 231, 589
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 622
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 238
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 231, 589
VpaK11BI GGWCC 4 cut(s) 164, 266, 323, 563
XapI RAATTY 1 cut(s) 596
XmiI GTMKAC 2 cut(s) 468, 541
XspI CTAG 3 cut(s) 101, 452, 545
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.