Rh5BG504300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017006
Physical Location & Seq
Forward (+)
80116629 .. 80159684
43056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG504300.1

Sequence Viewer

Length: 546 bp
ATGTCACTGGTGGTGCGGTTTTGGTATGCTGCAGCAGCCTGCAGCATATTCATCTCTGGGTTTGTTGCACAGGCTCAACCCACCACAGATCCCTCTGAAGCCTTGCTCCAAGAGGCAAGAGCCAATGATGCCAAAAGTTCATCATCTACTCTGGAAGTGGAGCATCGCAAACTCCCAATGCGACACCAACTGGGTCAAGCACCGGAACTTCATGTTACTGCCTTTAAGTTCTTTAACTATGAGTGTAGAGGATTGAACGATGATGATAACAATTTGGTTCGCTCGTCGTACGTAATGGCACAATTGCCTTGTCGAAATTGCAGAATGCTTATGAGAGGTTGGAAGGGATGGTGGGAAGAGGTGTCTGAAGGCAAGAAAGATCACTTGGTTCAGGTGACTCGAATTAAGGAGAAAAAGGAGGTTTCAGAGTGGGAGACTCAGCTTAGTAATAGAAACTTCGATTTGGGAATGGGCTTCATGAAAATGGTTGGGATCCCAAGTATTCCTAGAGGTTCAGGTTGGAGCCCATGGACAGGTATCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

8.37

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 16
AclWI GGATC 3 cut(s) 83, 487, 500
AcuI CTGAAG 2 cut(s) 117, 387
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 83, 487, 500
ApeKI GCWGC 4 cut(s) 29, 32, 35, 42
AsuHPI GGTGA 1 cut(s) 406
BamHI GGATCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 16, 44, 47, 54
BccI CCATC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 2 cut(s) 30, 40
BisI GCNGC 4 cut(s) 30, 33, 36, 43
BlsI GCNGC 4 cut(s) 31, 34, 37, 44
BmiI GGNNCC 2 cut(s) 494, 524
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 118, 172
BmuI ACTGGG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 12, 195
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 2 cut(s) 12, 195
BseXI GCAGC 4 cut(s) 16, 44, 47, 54
BsiSI CCGG 1 cut(s) 203
BsiWI CGTACG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 3 cut(s) 88, 379, 492
Bsp19I CCATGG 1 cut(s) 527
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 494, 524
BspMAI CTGCAG 2 cut(s) 34, 44
BspPI GGATC 3 cut(s) 83, 487, 500
BsrI ACTGG 2 cut(s) 12, 195
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 3 cut(s) 88, 379, 492
BssT1I CCWWGG 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 438, 443
BstDSI CCRYGG 1 cut(s) 527
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 3 cut(s) 91, 382, 495
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 3 cut(s) 88, 379, 492
BstMWI GCNNNNNNNGC 2 cut(s) 35, 128
BstSFI CTRYAG 2 cut(s) 30, 40
BstSNI TACGTA 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 16, 44, 47, 54
BstX2I RGATCY 2 cut(s) 88, 492
BstYI RGATCY 2 cut(s) 88, 492
BtgI CCRYGG 1 cut(s) 527
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 40
CciI TCATGA 1 cut(s) 477
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 212, 478, 528
CviJI RGCY 7 cut(s) 38, 74, 101, 122, 442, 474, 525
CviKI_1 RGCY 7 cut(s) 38, 74, 101, 122, 442, 474, 525
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 438, 443
DpnI GATC 3 cut(s) 90, 381, 494
DpnII GATC 3 cut(s) 88, 379, 492
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco105I TACGTA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 117, 387
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 3 cut(s) 215, 481, 531
FaiI YATR 7 cut(s) 27, 47, 213, 240, 332, 479, 529
FatI CATG 3 cut(s) 211, 477, 527
Fnu4HI GCNGC 4 cut(s) 30, 33, 36, 43
FokI GGATG 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 30, 33, 36, 43
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 30, 33, 36, 43
HapII CCGG 1 cut(s) 203
Hin1II CATG 3 cut(s) 215, 481, 531
HinfI GANTC 2 cut(s) 397, 436
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 97, 367, 427
Hpy188III TCNNGA 2 cut(s) 152, 478
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 337, 362
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 32, 42, 68, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 128
HpyF3I CTNAG 2 cut(s) 438, 443
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 215, 481, 531
Kzo9I GATC 3 cut(s) 88, 379, 492
LmnI GCTCC 3 cut(s) 111, 160, 522
LpnPI CCDG 9 cut(s) 42, 52, 56, 137, 176, 216, 377, 501, 519
Lsp1109I GCAGC 4 cut(s) 16, 44, 47, 54
LweI GCATC 2 cut(s) 118, 172
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 3, 214, 394
MalI GATC 3 cut(s) 90, 381, 494
MboI GATC 3 cut(s) 88, 379, 492
MboII GAAGA 1 cut(s) 368
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 2 cut(s) 88, 492
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 4 cut(s) 271, 302, 316, 402
MlyI GAGTC 2 cut(s) 391, 430
MmeI TCCRAC 2 cut(s) 320, 500
MnlI CCTC 7 cut(s) 103, 106, 242, 329, 352, 412, 503
MseI TTAA 4 cut(s) 225, 234, 405, 544
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 35, 128
NcoI CCATGG 1 cut(s) 527
NdeII GATC 3 cut(s) 88, 379, 492
NlaIII CATG 3 cut(s) 215, 481, 531
NlaIV GGNNCC 2 cut(s) 494, 524
NmuCI GTSAC 2 cut(s) 3, 394
PagI TCATGA 1 cut(s) 477
PctI GAATGC 1 cut(s) 330
Pfl23II CGTACG 1 cut(s) 288
PkrI GCNGC 4 cut(s) 31, 34, 37, 44
PleI GAGTC 2 cut(s) 391, 430
PpsI GAGTC 2 cut(s) 391, 430
Ppu21I YACGTR 1 cut(s) 292
PspLI CGTACG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 494, 524
PstI CTGCAG 2 cut(s) 34, 44
PsuI RGATCY 2 cut(s) 88, 492
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 4 cut(s) 225, 234, 405, 544
SatI GCNGC 4 cut(s) 30, 33, 36, 43
Sau3AI GATC 3 cut(s) 88, 379, 492
SchI GAGTC 2 cut(s) 391, 430
SduI GDGCHC 1 cut(s) 527
SetI ASST 9 cut(s) 294, 340, 363, 396, 423, 444, 514, 520, 538
SfaNI GCATC 2 cut(s) 118, 172
SfcI CTRYAG 2 cut(s) 30, 40
SmiMI CAYNNNNRTG 1 cut(s) 482
SnaBI TACGTA 1 cut(s) 292
Sse9I AATT 4 cut(s) 271, 302, 316, 402
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 527
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 313, 400, 459
TasI AATT 4 cut(s) 271, 302, 316, 402
Tru1I TTAA 4 cut(s) 225, 234, 405, 544
Tru9I TTAA 4 cut(s) 225, 234, 405, 544
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 3, 394
TseI GCWGC 4 cut(s) 29, 32, 35, 42
Tsp45I GTSAC 2 cut(s) 3, 394
TspDTI ATGAA 5 cut(s) 40, 129, 200, 466, 494
TspRI CASTG 1 cut(s) 12
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.