Rh1CG328600

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017006
Physical Location & Seq
Reverse (-)
60235187 .. 60255206
20020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG328600.1

Sequence Viewer

Length: 1035 bp
ATGGATACGCTTGCCACTTTGGATGAGATGAAGTCCATGATGGTAGATGCCTCAGTAGTTGTTACCAGTACAGTGCTTGCACTCGCATTCTTCGGCTTGAGGGGACGCACGAAGGAGTTGAGGATCAAGGGAGGCTTACTCAAGTGGCTGCGGATTTGTGCTCGAGTTGTCATGGAGGTTTGGACTTGTGGAGCAAGGCAGCAGGCCGAGCAAAGCAGCAACAAGGCATTTGTGCACTTGTGGACAGGAATTCTAGTTTTGAAGGATTTTGATATACGAAAGGGAGCAGGTGGGAAATCTTTGCAATCCGTTCAGAAGGAATATAAGGCCCAGGTTTCACAGAACTACCTTGAAATTCATCTCTTTTGGGCTGGAAAGGGGACTTGCTGCGTACCTGATTTTGGTACTTATGGACCTGTTATTTCGGCCATCAGTGCTACACCAGATTTCCCACCTACTATCGTTCTGAACCATCCAACTTGTAAGAAGAATAGGATGGGGCTGATTCTGGGGATTGTTGTTGGTGGTGGAGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCGCAGCAAGGAAAAAATGATGGGTATCTTGCACCAGAATATGCCATGCGTGGACACCTAACAGAGAAGACTGATGTGTTTGCCTTTGGTGTTCTTGCTCTAGAAATTGTCAGTGGTAGACCAAATTCTGACCGGAGCTTGGAAGGCGAGATGATTTATCTTCTCGAATGGATATTGGATTGGGGTGAGAACAATATTGCCATTGCTGCTGCAACTACTGCTCCTGGGGCATTGTTTCAGCAAGTTGTTGTTTGGCATAAGCTTGACCATCCAGATATTTTTAAGGTATCCCATCTCAGGTCATGGACTAAACTTGGAGTTATGACAGCTTCTCAACGCAACATAAGGCTCGGCTTTGGAATTTGGGCGAAGTTTCATATTTCCGGCATGCATGTTGAAGGAAAGTCATCTTCTACATTATTGCTCACTTTTGACATTGTGGCACCTAGCTAG

Protein Analysis

344

Amino Acids

37.63

Weight (kDa)

9.12

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 82 - 144 3e-12 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 1024
AccI GTMKAC 1 cut(s) 700
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 249, 354, 706, 942
AfaI GTAC 4 cut(s) 70, 393, 406, 535
AfiI CCNNNNNNNGG 3 cut(s) 401, 721, 879
AgsI TTSAA 3 cut(s) 262, 353, 980
AjnI CCWGG 2 cut(s) 330, 805
AluBI AGCT 4 cut(s) 720, 844, 911, 1032
AluI AGCT 4 cut(s) 720, 844, 911, 1032
Alw21I GWGCWC 2 cut(s) 163, 237
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 3 cut(s) 204, 327, 426
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 8 cut(s) 148, 199, 216, 387, 578, 586, 788, 791
ApoI RAATTY 4 cut(s) 249, 354, 706, 942
AspS9I GGNCC 2 cut(s) 328, 413
AsuHPI GGTGA 1 cut(s) 779
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 1024
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 163, 237
BbvI GCAGC 8 cut(s) 135, 211, 228, 374, 590, 598, 775, 778
BccI CCATC 8 cut(s) 34, 437, 480, 490, 539, 596, 858, 882
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 2 cut(s) 332, 807
BciVI GTATCC 1 cut(s) 880
BfaI CTAG 4 cut(s) 254, 683, 1029, 1033
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 278
BfuI GTATCC 1 cut(s) 880
BisI GCNGC 8 cut(s) 149, 200, 217, 388, 579, 587, 789, 792
BlsI GCNGC 8 cut(s) 150, 201, 218, 389, 580, 588, 790, 793
Bme1390I CCNGG 2 cut(s) 332, 807
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 328, 413
BmiI GGNNCC 1 cut(s) 1026
BmrFI CCNGG 2 cut(s) 332, 807
BmsI GCATC 2 cut(s) 37, 590
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpuEI CTTGAG 2 cut(s) 118, 125
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 330, 806
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 721, 879
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 2 cut(s) 332, 807
BseDI CCNNGG 2 cut(s) 330, 806
BseGI GGATG 4 cut(s) 28, 472, 501, 850
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 3 cut(s) 401, 721, 879
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 66, 892
BseNI ACTGG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 8 cut(s) 135, 211, 228, 374, 590, 598, 775, 778
BshFI GGCC 3 cut(s) 206, 329, 428
BshNI GGYRCC 1 cut(s) 1024
BsiHKAI GWGCWC 2 cut(s) 163, 237
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 715, 966
BslFI GGGAC 2 cut(s) 117, 394
BslI CCNNNNNNNGG 3 cut(s) 401, 721, 879
BsmFI GGGAC 2 cut(s) 117, 394
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 3 cut(s) 206, 329, 428
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 163, 237
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 151
BspANI GGCC 3 cut(s) 206, 329, 428
BspCNI CTCAG 2 cut(s) 65, 891
BspLI GGNNCC 1 cut(s) 1026
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 1024
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 330, 806
BssMI GATC 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 332, 807
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 800
BstC8I GCNNGC 4 cut(s) 12, 78, 204, 971
BstDEI CTNAG 2 cut(s) 52, 878
BstF5I GGATG 4 cut(s) 28, 472, 501, 850
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 6 cut(s) 208, 434, 726, 788, 800, 809
BstNI CCWGG 2 cut(s) 332, 807
BstNSI RCATGY 2 cut(s) 973, 977
BstSCI CCNGG 2 cut(s) 330, 805
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 8 cut(s) 135, 211, 228, 374, 590, 598, 775, 778
BstV2I GAAGAC 1 cut(s) 656
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 3 cut(s) 206, 329, 428
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 4 cut(s) 28, 472, 501, 850
BtsIMutI CAGTG 3 cut(s) 78, 439, 700
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 4 cut(s) 12, 78, 204, 971
Cfr13I GGNCC 2 cut(s) 328, 413
CseI GACGC 1 cut(s) 114
Csp6I GTAC 4 cut(s) 69, 392, 405, 534
CviAII CATG 6 cut(s) 37, 172, 628, 885, 970, 974
CviQI GTAC 4 cut(s) 69, 392, 405, 534
DdeI CTNAG 2 cut(s) 52, 878
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 330, 805
EcoT22I ATGCAT 1 cut(s) 975
FaeI CATG 6 cut(s) 40, 175, 631, 888, 973, 977
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 2 cut(s) 117, 394
FatI CATG 6 cut(s) 36, 171, 627, 884, 969, 973
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 8 cut(s) 149, 200, 217, 388, 579, 587, 789, 792
FokI GGATG 4 cut(s) 35, 459, 508, 837
Fsp4HI GCNGC 8 cut(s) 149, 200, 217, 388, 579, 587, 789, 792
FspBI CTAG 4 cut(s) 254, 683, 1029, 1033
GluI GCNGC 8 cut(s) 149, 200, 217, 388, 579, 587, 789, 792
HaeIII GGCC 3 cut(s) 206, 329, 428
HapII CCGG 2 cut(s) 715, 966
HgaI GACGC 1 cut(s) 114
Hin1II CATG 6 cut(s) 40, 175, 631, 888, 973, 977
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 1 cut(s) 505
HpaII CCGG 2 cut(s) 715, 966
HphI GGTGA 1 cut(s) 779
Hpy166II GTNNAC 4 cut(s) 235, 243, 635, 701
Hpy188I TCNGA 3 cut(s) 315, 468, 712
Hpy188III TCNNGA 3 cut(s) 683, 746, 854
Hpy8I GTNNAC 4 cut(s) 235, 243, 635, 701
HpyAV CCTTC 5 cut(s) 106, 256, 310, 719, 974
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 7 cut(s) 80, 235, 304, 578, 614, 794, 973
HpyF10VI GCNNNNNNNGC 6 cut(s) 208, 434, 726, 788, 800, 809
HpyF3I CTNAG 2 cut(s) 52, 878
Hsp92II CATG 6 cut(s) 40, 175, 631, 888, 973, 977
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 4 cut(s) 191, 284, 717, 808
Lsp1109I GCAGC 8 cut(s) 135, 211, 228, 374, 590, 598, 775, 778
LweI GCATC 2 cut(s) 37, 590
MaeI CTAG 4 cut(s) 254, 683, 1029, 1033
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 6 cut(s) 82, 499, 561, 661, 734, 984
MfeI CAATTG 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 163, 237
MluCI AATT 7 cut(s) 249, 354, 555, 569, 687, 706, 942
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 6 cut(s) 61, 93, 114, 125, 169, 524
Mph1103I ATGCAT 1 cut(s) 975
MseI TTAA 2 cut(s) 540, 864
MspI CCGG 2 cut(s) 715, 966
MspR9I CCNGG 2 cut(s) 332, 807
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 2 cut(s) 332, 807
MwoI GCNNNNNNNGC 6 cut(s) 208, 434, 726, 788, 800, 809
NdeII GATC 1 cut(s) 123
NlaIII CATG 6 cut(s) 40, 175, 631, 888, 973, 977
NlaIV GGNNCC 1 cut(s) 1026
NmeAIII GCCGAG 2 cut(s) 232, 912
NsiI ATGCAT 1 cut(s) 975
NspI RCATGY 2 cut(s) 973, 977
PaeI GCATGC 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 278
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 505
PkrI GCNGC 8 cut(s) 150, 201, 218, 389, 580, 588, 790, 793
Psp6I CCWGG 2 cut(s) 330, 805
PspGI CCWGG 2 cut(s) 330, 805
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 2 cut(s) 328, 413
PspXI VCTCGAGB 1 cut(s) 162
PstI CTGCAG 1 cut(s) 580
RsaI GTAC 4 cut(s) 70, 393, 406, 535
RsaNI GTAC 4 cut(s) 69, 392, 405, 534
SaqAI TTAA 2 cut(s) 540, 864
SatI GCNGC 8 cut(s) 149, 200, 217, 388, 579, 587, 789, 792
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 328, 413
ScrFI CCNGG 2 cut(s) 332, 807
SduI GDGCHC 2 cut(s) 163, 237
SfaNI GCATC 2 cut(s) 37, 590
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 3 cut(s) 97, 140, 162
SmoI CTYRAG 3 cut(s) 97, 140, 162
SphI GCATGC 1 cut(s) 973
Sse9I AATT 7 cut(s) 249, 354, 555, 569, 687, 706, 942
SsiI CCGC 1 cut(s) 151
SspI AATATT 1 cut(s) 778
SspMI CTAG 4 cut(s) 254, 683, 1029, 1033
StyD4I CCNGG 2 cut(s) 330, 805
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 163, 747
TasI AATT 7 cut(s) 249, 354, 555, 569, 687, 706, 942
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 2 cut(s) 540, 864
Tru9I TTAA 2 cut(s) 540, 864
TscAI CASTG 3 cut(s) 78, 439, 700
TseI GCWGC 8 cut(s) 148, 199, 216, 387, 578, 586, 788, 791
TspDTI ATGAA 3 cut(s) 44, 347, 947
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 3 cut(s) 78, 439, 700
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 4 cut(s) 249, 354, 706, 942
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 2 cut(s) 973, 977
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 4 cut(s) 254, 683, 1029, 1033
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.