Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8113306.1

Orthogroup ID

OG0011012

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 563

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8113306.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

atggtctctttggcttcccttgttagtttgggaagtgttgttacgcttgcgggttcatccgaaaggtctggctcgcttgttaggaaggtttccttgtctaagagtagttttaggggtaataggagatggcattgtgtgagattgtcagtttgtaaattttcggtcacaacaactgatttcgttgctgagcatagcaatgaggtatcccttgattctaactatagaggaagtagtaatgatgcttctgttgccaatgctgattttgtacttaagccgtccccgaagccagtattgaagccctctgaggggtccaatgctgaaccgccccttttaagccttaatgctgctgattgggacgcctcaaaaactagtggggatttggatgtggaagaggaagataagagtaatgtgattgagtcacttggagaggttttggagaaggctgaaaagctagaagctccaaaagtgggtgattcgagtactaagaaagccagtaagcctgtaaatagacctgcaccttctaatgcaactactacttcaggaaatgctagacaagtaaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP_EFTU IF-2 IF2_N

Protein Analysis

187

Amino Acids

19.76

Weight (kDa)

6.75

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17220
fragaria_vesca	FvH4_3g16100 FvH4_3g16100 FvH4_3g16100
malus_domestica	MD05G1213700.v1.1 MD10G1197600.v1.1
prunus_persica	Prupe.4G144300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027081
rosa_laevigata	RLG00000032988
rosa_multiflora	Rmu_co8113306.1_g000001 Rmu_sc0000882.1_g000026 Rmu_sc0006065.1_g000025 Rmu_sc0031914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052410
rosa_rugosa	Rorug05G0097200
rosa_samantha	Rh5AG190800 Rh5BG188400 Rh5CG208200 Rh5DG190200
rosa_wichuraiana	Rw5G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AciI	CCGC	2 cut(s)	50, 323
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	2 cut(s)	267, 481
AfiI	CCNNNNNNNGG	3 cut(s)	305, 306, 467
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	295
AhlI	ACTAGT	1 cut(s)	368
AluBI	AGCT	2 cut(s)	451, 458
AluI	AGCT	2 cut(s)	451, 458
Alw26I	GTCTC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	4 cut(s)	25, 57, 226, 258
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	369, 452, 549
BfmI	CTRYAG	1 cut(s)	220
BfrI	CTTAAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	229
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 306, 467
Bse1I	ACTGG	2 cut(s)	287, 492
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	56, 388
BseLI	CCNNNNNNNGG	3 cut(s)	305, 306, 467
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	177, 294
BseNI	ACTGG	2 cut(s)	287, 492
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	498
BslFI	GGGAC	2 cut(s)	262, 368
BslI	CCNNNNNNNGG	3 cut(s)	305, 306, 467
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	262, 368
Bso31I	GGTCTC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	50, 323
BspCNI	CTCAG	2 cut(s)	178, 295
BspLI	GGNNCC	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	287, 492
BssNI	GRCGYC	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	48, 74
BstDEI	CTNAG	4 cut(s)	99, 186, 303, 483
BstF5I	GGATG	2 cut(s)	56, 388
BstMAI	GTCTC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	56, 388
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	48, 74
Cfr13I	GGNCC	1 cut(s)	309
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	266, 480
CviQI	GTAC	2 cut(s)	266, 480
DdeI	CTNAG	4 cut(s)	99, 186, 303, 483
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	522
FaiI	YATR	2 cut(s)	192, 222
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	2 cut(s)	262, 368
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	43, 395
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	369, 452, 549
GluI	GCNGC	1 cut(s)	345
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	212, 416, 473
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	61, 304
Hpy188III	TCNNGA	1 cut(s)	540
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	3 cut(s)	79, 433, 528
HpyCH4V	TGCA	2 cut(s)	515, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	4 cut(s)	99, 186, 303, 483
Hsp92I	GRCGYC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	6 cut(s)	54, 300, 505, 513, 525, 525
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	369, 452, 549
MaeIII	GTNAC	3 cut(s)	40, 163, 417
MboII	GAAGA	2 cut(s)	401, 407
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	7 cut(s)	193, 218, 298, 310, 370, 385, 421
MseI	TTAA	3 cut(s)	270, 332, 339
MslI	CAYNNNNRTG	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	163, 417
PfeI	GAWTC	2 cut(s)	212, 473
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	309
RsaI	GTAC	2 cut(s)	267, 481
RsaNI	GTAC	2 cut(s)	266, 480
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	270, 332, 339
SatI	GCNGC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	309
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	425
SetI	ASST	8 cut(s)	68, 90, 204, 432, 453, 460, 514, 520
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	50, 323
SspMI	CTAG	3 cut(s)	369, 452, 549
TaqI	TCGA	1 cut(s)	476
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	155
TatI	WGTACW	2 cut(s)	265, 479
TfiI	GAWTC	2 cut(s)	212, 473
Tru1I	TTAA	3 cut(s)	270, 332, 339
Tru9I	TTAA	3 cut(s)	270, 332, 339
TseFI	GTSAC	2 cut(s)	163, 417
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	2 cut(s)	163, 417
TspDTI	ATGAA	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	3 cut(s)	369, 452, 549
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.