Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031914.1

Orthogroup ID

OG0011012

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2040

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031914.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1360 bp

taagaaagccagtaagcctgtaaatagacctgcaccttctaatgcaactactacttcaggaaatgctagacaagtaaactcgacagctagtaccaaggctaaaactttgaagagtgtgtggcgtaaaggagacacagttgcagctgtgcaaaaggttgtaaaggaattacctaaggttaataatacagttcggagagaagaaccaaaaacaggggaaggggtgaaggtagagtcgccaacccgtcctcctttaagacctccttctccacctttgagaccccaaccaacattacaagcaaagccttctacggctcctccacccacgataaagaaacctgtagttctgaaggatcttggggcagctccaaagtcggcagtgattgatgacactggttcacccccaaaaactaaagaaaggaagccaattttgattgacaaattttctaccaagaagccaggggtcgattctgtggtttctcaagcagttttagctcctacaaaaccagccaaaggctctccacctggcagattcaaagatgggttccggaagaaaaatgctcaacctggaggactacgaaggcggaaggctaatgatgagctcactgatgatgagagttcggaactcaatgtctctaaagcagcaaggaaagggaggaagtggagtaaagcaagcaggaaggcggcaagactccaggctgccaaagatgcagcccctgttaaagtagatattctagaggttgatgacgatggcatgttaatagatgagttggccttcaatttggctattaatgaatccgaaattctcggatctctgtactccaggggaattaagcctgatggggttcaaactctgagcaaagatatggtaaagatgatttgtaaagagtatgatgtggaagtcatagatgttgacccagtaaaggtggaagaaggggcaagaaagaaagaaatactcgatgaagatgacctagacaaactagaagacaggcctcctgtccttactataatgggtcatgtggatcatggcaagacaactctattggattacatccggaagagcaaggttgctgcctccgaggctggtggaattacacaaggaattggggcatacaaggtgcttgtgccagttgatggcaagttgcaatcatgtgttttccttgatactcctggacatgaggcatttggagcaatgagagctcgtggagcaagggtgacagacatagctatcattgttgtggctgctgatgatgggatccgccctcaaacaaaagaggccatcgctcatgctaaagctgctggtgtgccgatagtaatagctataaataagatagacaaggatggagctaatccagaacgagtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP_EFTU IF-2 IF2_N

Protein Analysis

453

Amino Acids

48.59

Weight (kDa)

9.67

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17220
fragaria_vesca	FvH4_3g16100 FvH4_3g16100 FvH4_3g16100
malus_domestica	MD05G1213700.v1.1 MD10G1197600.v1.1
prunus_persica	Prupe.4G144300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027081
rosa_laevigata	RLG00000032988
rosa_multiflora	Rmu_co8113306.1_g000001 Rmu_sc0000882.1_g000026 Rmu_sc0006065.1_g000025 Rmu_sc0031914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052410
rosa_rugosa	Rorug05G0097200
rosa_samantha	Rh5AG190800 Rh5BG188400 Rh5CG208200 Rh5DG190200
rosa_wichuraiana	Rw5G017380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	1131
AccIII	TCCGGA	2 cut(s)	544, 1051
AciI	CCGC	3 cut(s)	581, 681, 1256
AclWI	GGATC	5 cut(s)	358, 815, 1027, 1247, 1260
AcsI	RAATTY	2 cut(s)	438, 799
AcuI	CTGAAG	2 cut(s)	40, 366
AfaI	GTAC	2 cut(s)	92, 816
AfiI	CCNNNNNNNGG	4 cut(s)	210, 510, 920, 1131
AgsI	TTSAA	4 cut(s)	110, 533, 776, 846
AjnI	CCWGG	6 cut(s)	455, 521, 563, 691, 819, 1166
Alw21I	GWGCWC	2 cut(s)	601, 1199
Alw26I	GTCTC	3 cut(s)	124, 269, 635
AlwI	GGATC	5 cut(s)	358, 815, 1027, 1247, 1260
AlwNI	CAGNNNCTG	1 cut(s)	714
Aor13HI	TCCGGA	2 cut(s)	544, 1051
AoxI	GGCC	3 cut(s)	769, 987, 1273
ApeKI	GCWGC	8 cut(s)	141, 360, 639, 696, 708, 1068, 1239, 1293
ApoI	RAATTY	2 cut(s)	438, 799
AseI	ATTAAT	1 cut(s)	787
AsuHPI	GGTGA	3 cut(s)	233, 388, 1223
AxyI	CCTNAGG	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	1252
BanII	GRGCYC	2 cut(s)	601, 1199
BauI	CACGAG	1 cut(s)	1198
BbsI	GAAGAC	1 cut(s)	988
Bbv12I	GWGCWC	2 cut(s)	601, 1199
BbvI	GCAGC	8 cut(s)	153, 372, 651, 683, 720, 1055, 1226, 1280
BccI	CCATC	7 cut(s)	531, 741, 831, 1125, 1242, 1284, 1332
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	6 cut(s)	457, 523, 565, 693, 821, 1168
BcoDI	GTCTC	3 cut(s)	124, 269, 635
BfaI	CTAG	5 cut(s)	67, 88, 732, 969, 978
BfmI	CTRYAG	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	1077
BisI	GCNGC	9 cut(s)	142, 361, 640, 682, 697, 709, 1069, 1240, 1294
BlsI	GCNGC	9 cut(s)	143, 362, 641, 683, 698, 710, 1070, 1241, 1295
Bme1390I	CCNGG	6 cut(s)	457, 523, 565, 693, 821, 1168
BmiI	GGNNCC	3 cut(s)	313, 543, 1254
BmrFI	CCNGG	6 cut(s)	457, 523, 565, 693, 821, 1168
BmrI	ACTGGG	1 cut(s)	909
BmsI	GCATC	1 cut(s)	695
BmuI	ACTGGG	1 cut(s)	909
BpiI	GAAGAC	1 cut(s)	988
BpmI	CTGGAG	3 cut(s)	586, 675, 803
BpuEI	CTTGAG	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	4 cut(s)	94, 456, 820, 1075
BsaWI	WCCGGW	2 cut(s)	544, 1051
BsaXI	ACNNNNNCTCC	8 cut(s)	121, 151, 230, 260, 299, 329, 1195, 1225
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 510, 920, 1131
Bse1I	ACTGG	4 cut(s)	10, 395, 915, 1125
Bse21I	CCTNAGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	1195
BseAI	TCCGGA	2 cut(s)	544, 1051
BseBI	CCWGG	6 cut(s)	457, 523, 565, 693, 821, 1168
BseDI	CCNNGG	4 cut(s)	94, 456, 820, 1075
BseGI	GGATG	2 cut(s)	1048, 1343
BseLI	CCNNNNNNNGG	4 cut(s)	210, 510, 920, 1131
BseMI	GCAATG	1 cut(s)	1195
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	4 cut(s)	10, 395, 915, 1125
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	8 cut(s)	153, 372, 651, 683, 720, 1055, 1226, 1280
BsgI	GTGCAG	1 cut(s)	16
BshFI	GGCC	3 cut(s)	771, 989, 1275
BsiHKAI	GWGCWC	2 cut(s)	601, 1199
BsiSI	CCGG	2 cut(s)	545, 1052
BslI	CCNNNNNNNGG	4 cut(s)	210, 510, 920, 1131
BsmAI	GTCTC	3 cut(s)	124, 269, 635
BsnI	GGCC	3 cut(s)	771, 989, 1275
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	601, 1199
Bsp13I	TCCGGA	2 cut(s)	544, 1051
Bsp143I	GATC	4 cut(s)	350, 807, 1019, 1252
BspACI	CCGC	3 cut(s)	581, 681, 1256
BspANI	GGCC	3 cut(s)	771, 989, 1275
BspCNI	CTCAG	1 cut(s)	844
BspEI	TCCGGA	2 cut(s)	544, 1051
BspLI	GGNNCC	3 cut(s)	313, 543, 1254
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	5 cut(s)	358, 815, 1027, 1247, 1260
BspQI	GCTCTTC	1 cut(s)	1050
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	1195
BsrI	ACTGG	4 cut(s)	10, 395, 915, 1125
BssECI	CCNNGG	4 cut(s)	94, 456, 820, 1075
BssMI	GATC	4 cut(s)	350, 807, 1019, 1252
BssSI	CACGAG	1 cut(s)	1198
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	1198
Bst2UI	CCWGG	6 cut(s)	457, 523, 565, 693, 821, 1168
Bst4CI	ACNGT	2 cut(s)	137, 188
Bst6I	CTCTTC	2 cut(s)	105, 1050
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	2 cut(s)	172, 852
BstF5I	GGATG	2 cut(s)	1048, 1343
BstKTI	GATC	4 cut(s)	353, 810, 1022, 1255
BstMAI	GTCTC	3 cut(s)	124, 269, 635
BstMBI	GATC	4 cut(s)	350, 807, 1019, 1252
BstMWI	GCNNNNNNNGC	7 cut(s)	489, 705, 1077, 1185, 1194, 1203, 1293
BstNI	CCWGG	6 cut(s)	457, 523, 565, 693, 821, 1168
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	6 cut(s)	455, 521, 563, 691, 819, 1166
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	8 cut(s)	153, 372, 651, 683, 720, 1055, 1226, 1280
BstV2I	GAAGAC	1 cut(s)	988
BstX2I	RGATCY	3 cut(s)	350, 807, 1252
BstYI	RGATCY	3 cut(s)	350, 807, 1252
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	771, 989, 1275
BtgZI	GCGATG	1 cut(s)	1262
BtsCI	GGATG	2 cut(s)	1048, 1343
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	382, 388, 601
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	671
CaiI	CAGNNNCTG	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	91, 815
CviAII	CATG	6 cut(s)	752, 1014, 1023, 1147, 1173, 1284
CviQI	GTAC	2 cut(s)	91, 815
DdeI	CTNAG	2 cut(s)	172, 852
DpnI	GATC	4 cut(s)	352, 809, 1021, 1254
DpnII	GATC	4 cut(s)	350, 807, 1019, 1252
Eam1104I	CTCTTC	2 cut(s)	105, 1050
EarI	CTCTTC	2 cut(s)	105, 1050
EciI	GGCGGA	2 cut(s)	596, 1245
Ecl136II	GAGCTC	2 cut(s)	599, 1197
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	989
Eco24I	GRGCYC	2 cut(s)	601, 1199
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	2 cut(s)	599, 1197
Eco57I	CTGAAG	2 cut(s)	40, 366
Eco81I	CCTNAGG	1 cut(s)	172
EcoICRI	GAGCTC	2 cut(s)	599, 1197
EcoRII	CCWGG	6 cut(s)	455, 521, 563, 691, 819, 1166
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	601, 1199
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	6 cut(s)	755, 1017, 1026, 1150, 1176, 1287
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	6 cut(s)	751, 1013, 1022, 1146, 1172, 1283
Fnu4HI	GCNGC	9 cut(s)	142, 361, 640, 682, 697, 709, 1069, 1240, 1294
FokI	GGATG	2 cut(s)	1035, 1350
FriOI	GRGCYC	2 cut(s)	601, 1199
Fsp4HI	GCNGC	9 cut(s)	142, 361, 640, 682, 697, 709, 1069, 1240, 1294
FspBI	CTAG	5 cut(s)	67, 88, 732, 969, 978
GluI	GCNGC	9 cut(s)	142, 361, 640, 682, 697, 709, 1069, 1240, 1294
GsuI	CTGGAG	3 cut(s)	586, 675, 803
HaeIII	GGCC	3 cut(s)	771, 989, 1275
HapII	CCGG	2 cut(s)	545, 1052
Hin1II	CATG	6 cut(s)	755, 1017, 1026, 1150, 1176, 1287
HincII	GTYRAC	1 cut(s)	911
HindII	GTYRAC	1 cut(s)	911
HinfI	GANTC	6 cut(s)	231, 465, 529, 688, 792, 1357
HpaII	CCGG	2 cut(s)	545, 1052
HphI	GGTGA	3 cut(s)	233, 388, 1223
Hpy166II	GTNNAC	3 cut(s)	77, 396, 911
Hpy188I	TCNGA	7 cut(s)	193, 346, 620, 797, 807, 853, 1076
Hpy188III	TCNNGA	5 cut(s)	58, 545, 732, 1052, 1350
Hpy8I	GTNNAC	3 cut(s)	77, 396, 911
HpyCH4III	ACNGT	2 cut(s)	137, 188
HpyCH4V	TGCA	6 cut(s)	33, 45, 141, 149, 708, 1142
HpyF10VI	GCNNNNNNNGC	7 cut(s)	489, 705, 1077, 1185, 1194, 1203, 1293
HpyF3I	CTNAG	2 cut(s)	172, 852
Hsp92II	CATG	6 cut(s)	755, 1017, 1026, 1150, 1176, 1287
Kpn2I	TCCGGA	2 cut(s)	544, 1051
Kzo9I	GATC	4 cut(s)	350, 807, 1019, 1252
LguI	GCTCTTC	1 cut(s)	1050
LmnI	GCTCC	6 cut(s)	317, 368, 497, 1185, 1203, 1341
Lsp1109I	GCAGC	8 cut(s)	153, 372, 651, 683, 720, 1055, 1226, 1280
LweI	GCATC	1 cut(s)	695
MaeI	CTAG	5 cut(s)	67, 88, 732, 969, 978
MaeIII	GTNAC	1 cut(s)	1211
MalI	GATC	4 cut(s)	352, 809, 1021, 1254
MboI	GATC	4 cut(s)	350, 807, 1019, 1252
MboII	GAAGA	7 cut(s)	122, 210, 560, 939, 972, 993, 1067
MflI	RGATCY	3 cut(s)	350, 807, 1252
MhlI	GDGCHC	2 cut(s)	601, 1199
MluCI	AATT	8 cut(s)	165, 424, 438, 776, 799, 826, 1087, 1099
MlyI	GAGTC	2 cut(s)	240, 682
MroI	TCCGGA	2 cut(s)	544, 1051
MseI	TTAA	6 cut(s)	178, 252, 718, 756, 787, 829
MslI	CAYNNNNRTG	1 cut(s)	1233
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	545, 1052
MspR9I	CCNGG	6 cut(s)	457, 523, 565, 693, 821, 1168
MvaI	CCWGG	6 cut(s)	457, 523, 565, 693, 821, 1168
MwoI	GCNNNNNNNGC	7 cut(s)	489, 705, 1077, 1185, 1194, 1203, 1293
NdeII	GATC	4 cut(s)	350, 807, 1019, 1252
NlaIII	CATG	6 cut(s)	755, 1017, 1026, 1150, 1176, 1287
NlaIV	GGNNCC	3 cut(s)	313, 543, 1254
NmuCI	GTSAC	1 cut(s)	1211
NspI	RCATGY	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	1050
PfeI	GAWTC	3 cut(s)	465, 529, 792
PflMI	CCANNNNNTGG	1 cut(s)	1131
PfoI	TCCNGGA	1 cut(s)	1166
PkrI	GCNGC	9 cut(s)	143, 362, 641, 683, 698, 710, 1070, 1241, 1295
PleI	GAGTC	2 cut(s)	239, 682
PpsI	GAGTC	2 cut(s)	239, 682
PshBI	ATTAAT	1 cut(s)	787
Psp124BI	GAGCTC	2 cut(s)	601, 1199
Psp6I	CCWGG	6 cut(s)	455, 521, 563, 691, 819, 1166
PspGI	CCWGG	6 cut(s)	455, 521, 563, 691, 819, 1166
PspN4I	GGNNCC	3 cut(s)	313, 543, 1254
PstNI	CAGNNNCTG	1 cut(s)	714
PsuI	RGATCY	3 cut(s)	350, 807, 1252
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	2 cut(s)	92, 816
RsaNI	GTAC	2 cut(s)	91, 815
RseI	CAYNNNNRTG	1 cut(s)	1233
SacI	GAGCTC	2 cut(s)	601, 1199
SapI	GCTCTTC	1 cut(s)	1050
SaqAI	TTAA	6 cut(s)	178, 252, 718, 756, 787, 829
SatI	GCNGC	9 cut(s)	142, 361, 640, 682, 697, 709, 1069, 1240, 1294
Sau3AI	GATC	4 cut(s)	350, 807, 1019, 1252
SchI	GAGTC	2 cut(s)	240, 682
ScrFI	CCNGG	6 cut(s)	457, 523, 565, 693, 821, 1168
SduI	GDGCHC	2 cut(s)	601, 1199
SfaNI	GCATC	1 cut(s)	695
SfcI	CTRYAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	1233
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	8 cut(s)	165, 424, 438, 776, 799, 826, 1087, 1099
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	3 cut(s)	581, 681, 1256
SspMI	CTAG	5 cut(s)	67, 88, 732, 969, 978
SstI	GAGCTC	2 cut(s)	601, 1199
StuI	AGGCCT	1 cut(s)	989
StyD4I	CCNGG	6 cut(s)	455, 521, 563, 691, 819, 1166
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	137, 188
TaqI	TCGA	3 cut(s)	81, 463, 955
TasI	AATT	8 cut(s)	165, 424, 438, 776, 799, 826, 1087, 1099
TatI	WGTACW	1 cut(s)	814
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	3 cut(s)	465, 529, 792
Tru1I	TTAA	6 cut(s)	178, 252, 718, 756, 787, 829
Tru9I	TTAA	6 cut(s)	178, 252, 718, 756, 787, 829
TscAI	CASTG	3 cut(s)	382, 395, 608
TseFI	GTSAC	1 cut(s)	1211
TseI	GCWGC	8 cut(s)	141, 360, 639, 696, 708, 1068, 1239, 1293
Tsp45I	GTSAC	1 cut(s)	1211
TspDTI	ATGAA	2 cut(s)	805, 973
TspRI	CASTG	3 cut(s)	382, 395, 608
Van91I	CCANNNNNTGG	1 cut(s)	1131
VspI	ATTAAT	1 cut(s)	787
XapI	RAATTY	2 cut(s)	438, 799
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	5 cut(s)	67, 88, 732, 969, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.