Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8159502.1

Orthogroup ID

OG0005131

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 660

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8159502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

cggcggcctccttggacgctgacccactcctcaagggccgcacccctgtccaccgcttcacctccctccagtccgccgctgctctcttcctctttctgctcctcacgctcgccatcctcctctccgagtgcgccccttctctgctccccctctccaccgatctcatcttcggcctcgccgccgcgctcttctacatccactccttcatctctcgggaagctgcctccgtccagacctccgatctgcaggccaagtgcgattccgtctccggccgggtctccgcactggcctccctgctctgccttgtcttggcctgccagcccaagctctttgttgctgatgtgggtttgggcgctgccatgtccctgcagggcctctgggtcttgcagaccgggctctccctttacgcggatgccttcatccctgagggctgccacaagctacttgatgtcgtcagcggggttgagggttcaaccaagtgcgacctggatgagtcccgcttcagggcagttgctattttggatctcttgtttctggtgcacgtcatgtttgtgttgctcattatgctggtcgtccatgcagtggttgccaagtctgttggcatccgcaagttggcttcttacgaggccttgcctaccgctgtgcccgacaacaaccaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

219

Amino Acids

23.25

Weight (kDa)

5.81

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13890 AT5G13890 AT5G13890
fragaria_vesca	FvH4_6g31080
malus_domestica	MD09G1001100.v1.1 MD17G1004200.v1.1
prunus_persica	Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1
pyrus_communis	pycom111g00090
rosa_chinensis	RchiOBHm_Chr2g0137761 RchiOBHm_Chr2g0176701
rosa_laevigata	RLG00000019674 RLG00000022437
rosa_multiflora	Rmu_co8159502.1_g000001 Rmu_ssc0000468.1_g000007
rosa_rugosa	Rorug02G0345000 Rorug02G0345100 Rorug02G0345200 Rorug02G0597700
rosa_samantha	Rh2AG392600 Rh2AG675100 Rh2BG400200 Rh2BG686300 Rh2CG379300 Rh2CG649500 Rh2DG415200 Rh2DG700400
rosa_wichuraiana	Rw2G032160 Rw2G055410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccII	CGCG	2 cut(s)	184, 409
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	486
AfiI	CCNNNNNNNGG	6 cut(s)	309, 408, 503, 504, 582, 612
AgsI	TTSAA	1 cut(s)	473
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	3 cut(s)	220, 327, 441
AluI	AGCT	3 cut(s)	220, 327, 441
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	270, 282
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	9 cut(s)	5, 36, 171, 248, 270, 287, 311, 372, 626
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	4 cut(s)	79, 220, 355, 431
AspLEI	GCGC	3 cut(s)	133, 186, 355
AspS9I	GGNCC	2 cut(s)	36, 372
AsuC2I	CCSGG	2 cut(s)	274, 393
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	425
BaeGI	GKGCMC	2 cut(s)	542, 647
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	66, 207, 342, 418
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	274, 393
BcoDI	GTCTC	2 cut(s)	270, 282
BfmI	CTRYAG	2 cut(s)	244, 367
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	9 cut(s)	5, 39, 77, 80, 179, 182, 221, 356, 432
BlsI	GCNGC	9 cut(s)	6, 40, 78, 81, 180, 183, 222, 357, 433
Bme1390I	CCNGG	3 cut(s)	274, 393, 487
BmeT110I	CYCGRG	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	543
BmgT120I	GGNCC	2 cut(s)	36, 372
BmrFI	CCNGG	3 cut(s)	274, 393, 487
BmsI	GCATC	2 cut(s)	402, 611
BpmI	CTGGAG	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	2 cut(s)	274, 393
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	6 cut(s)	309, 408, 503, 504, 582, 612
Bse1I	ACTGG	2 cut(s)	69, 290
Bse21I	CCTNAGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	6 cut(s)	113, 194, 417, 419, 495, 602
BseLI	CCNNNNNNNGG	6 cut(s)	309, 408, 503, 504, 582, 612
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	69, 290
BseRI	GAGGAG	3 cut(s)	19, 91, 109
BseSI	GKGCMC	2 cut(s)	542, 647
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	4 cut(s)	66, 207, 342, 418
Bsh1236I	CGCG	2 cut(s)	184, 409
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	9 cut(s)	7, 38, 173, 250, 272, 289, 313, 374, 628
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	269, 273, 392
BslFI	GGGAC	2 cut(s)	348, 480
BslI	CCNNNNNNNGG	6 cut(s)	309, 408, 503, 504, 582, 612
BsmAI	GTCTC	2 cut(s)	270, 282
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	348, 480
BsnI	GGCC	9 cut(s)	7, 38, 173, 250, 272, 289, 313, 374, 628
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	398, 542, 647
Bsp143I	GATC	3 cut(s)	159, 240, 522
BspANI	GGCC	9 cut(s)	7, 38, 173, 250, 272, 289, 313, 374, 628
BspCNI	CTCAG	1 cut(s)	417
BspFNI	CGCG	2 cut(s)	184, 409
BspMAI	CTGCAG	2 cut(s)	248, 371
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	69, 290
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	3 cut(s)	159, 240, 522
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	91, 193
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	4 cut(s)	110, 248, 315, 319
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	6 cut(s)	113, 194, 417, 419, 495, 602
BstFNI	CGCG	2 cut(s)	184, 409
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	3 cut(s)	133, 186, 355
BstKTI	GATC	3 cut(s)	162, 243, 525
BstMAI	GTCTC	2 cut(s)	270, 282
BstMBI	GATC	3 cut(s)	159, 240, 522
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 393, 564, 586
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	3 cut(s)	272, 391, 485
BstSFI	CTRYAG	2 cut(s)	244, 367
BstSLI	GKGCMC	2 cut(s)	542, 647
BstUI	CGCG	2 cut(s)	184, 409
BstV1I	GCAGC	4 cut(s)	66, 207, 342, 418
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BstZI	CGGCCG	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	425
BsuRI	GGCC	9 cut(s)	7, 38, 173, 250, 272, 289, 313, 374, 628
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	6 cut(s)	113, 194, 417, 419, 495, 602
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	283, 587
Cac8I	GCNNGC	4 cut(s)	110, 248, 315, 319
CfoI	GCGC	3 cut(s)	133, 186, 355
Cfr13I	GGNCC	2 cut(s)	36, 372
CseI	GACGC	1 cut(s)	25
CviAII	CATG	3 cut(s)	360, 546, 577
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	3 cut(s)	161, 242, 524
DpnII	GATC	3 cut(s)	159, 240, 522
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	91, 193
EarI	CTCTTC	2 cut(s)	91, 193
EciI	GGCGGA	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	3 cut(s)	363, 549, 580
FaiI	YATR	4 cut(s)	361, 547, 565, 578
FaqI	GGGAC	2 cut(s)	348, 480
FatI	CATG	3 cut(s)	359, 545, 576
FauI	CCCGC	2 cut(s)	451, 505
Fnu4HI	GCNGC	9 cut(s)	5, 39, 77, 80, 179, 182, 221, 356, 432
FokI	GGATG	6 cut(s)	100, 181, 406, 424, 502, 589
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	9 cut(s)	5, 39, 77, 80, 179, 182, 221, 356, 432
GlaI	GCGC	3 cut(s)	132, 185, 354
GluI	GCNGC	9 cut(s)	5, 39, 77, 80, 179, 182, 221, 356, 432
GsuI	CTGGAG	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	9 cut(s)	7, 38, 173, 250, 272, 289, 313, 374, 628
HapII	CCGG	3 cut(s)	269, 273, 392
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	3 cut(s)	133, 186, 355
Hin1II	CATG	3 cut(s)	363, 549, 580
Hin6I	GCGC	3 cut(s)	131, 184, 353
HinP1I	GCGC	3 cut(s)	131, 184, 353
HinfI	GANTC	2 cut(s)	259, 493
HpaII	CCGG	3 cut(s)	269, 273, 392
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	51, 540
Hpy188I	TCNGA	2 cut(s)	126, 240
Hpy188III	TCNNGA	2 cut(s)	214, 231
Hpy8I	GTNNAC	2 cut(s)	51, 540
HpyAV	CCTTC	3 cut(s)	146, 213, 426
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	246, 369, 387, 540, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 393, 564, 586
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	3 cut(s)	363, 549, 580
HspAI	GCGC	3 cut(s)	131, 184, 353
Kzo9I	GATC	3 cut(s)	159, 240, 522
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	2 cut(s)	104, 149
Lsp1109I	GCAGC	4 cut(s)	66, 207, 342, 418
LweI	GCATC	2 cut(s)	402, 611
MaeII	ACGT	1 cut(s)	542
MalI	GATC	3 cut(s)	161, 242, 524
MboI	GATC	3 cut(s)	159, 240, 522
MboII	GAAGA	3 cut(s)	78, 159, 180
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	3 cut(s)	398, 542, 647
MlyI	GAGTC	1 cut(s)	502
MslI	CAYNNNNRTG	1 cut(s)	550
MspA1I	CMGCKG	3 cut(s)	79, 458, 640
MspI	CCGG	3 cut(s)	269, 273, 392
MspR9I	CCNGG	3 cut(s)	274, 393, 487
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	2 cut(s)	184, 409
MwoI	GCNNNNNNNGC	4 cut(s)	105, 393, 564, 586
NciI	CCSGG	2 cut(s)	274, 393
NdeII	GATC	3 cut(s)	159, 240, 522
NlaIII	CATG	3 cut(s)	363, 549, 580
PceI	AGGCCT	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	9 cut(s)	6, 40, 78, 81, 180, 183, 222, 357, 433
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	36, 372
PstI	CTGCAG	2 cut(s)	248, 371
PsuI	RGATCY	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	193
SatI	GCNGC	9 cut(s)	5, 39, 77, 80, 179, 182, 221, 356, 432
Sau3AI	GATC	3 cut(s)	159, 240, 522
Sau96I	GGNCC	2 cut(s)	36, 372
SbfI	CCTGCAGG	1 cut(s)	371
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	3 cut(s)	274, 393, 487
SdaI	CCTGCAGG	1 cut(s)	371
SduI	GDGCHC	3 cut(s)	398, 542, 647
SetI	ASST	7 cut(s)	64, 222, 238, 329, 443, 488, 545
SfaNI	GCATC	2 cut(s)	402, 611
SfcI	CTRYAG	2 cut(s)	244, 367
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse8387I	CCTGCAGG	1 cut(s)	371
SseBI	AGGCCT	1 cut(s)	628
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	3 cut(s)	272, 391, 485
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	545
TauI	GCSGC	5 cut(s)	7, 41, 79, 181, 184
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	2 cut(s)	290, 587
TseI	GCWGC	4 cut(s)	79, 220, 355, 431
TspDTI	ATGAA	2 cut(s)	195, 408
TspGWI	ACGGA	2 cut(s)	216, 252
TspRI	CASTG	2 cut(s)	290, 587
Van91I	CCANNNNNTGG	1 cut(s)	582
VneI	GTGCAC	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.