Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005131

Physical Location & Seq

Genomic Coordinates Forward (+)

43071198 .. 43073668

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTGCTAACAATGTTCCAGTGGGTTTGGAGTTTGGACAAGGAACTGAGGAGGAGATGGAGTACAGGGTTGAGTTGTTTAACAAAGAGAAAACCCCTCATGATTTTTATAATTTGGACAATCATATACATCAGTTTATGGGAAGTAGCGCGAGCATTGGAGCCAAAAAGGTGAAAGCTGAATGTCAACAGTTCAGGGAATATTGTAGGGTAGGAAATGGAGAAGGGTACCCATGCAGGGATTCCTCTTACAACAACTTCACTGGGAAAGCTCAAGCTCACTTCCTACTGAATGTGATAGAGGGAGGACCTCCAAGGGGAAGGACACCACAATCAGAGACCACGGTTAGTTTGTTGGGAGATTACCCTGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAAGGAAGGCACAAAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

143

Amino Acids

15.96

Weight (kDa)

6.09

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13890 AT5G13890 AT5G13890
fragaria_vesca	FvH4_6g31080
malus_domestica	MD09G1001100.v1.1 MD17G1004200.v1.1
prunus_persica	Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1
pyrus_communis	pycom111g00090
rosa_chinensis	RchiOBHm_Chr2g0137761 RchiOBHm_Chr2g0176701
rosa_laevigata	RLG00000019674 RLG00000022437
rosa_multiflora	Rmu_co8159502.1_g000001 Rmu_ssc0000468.1_g000007
rosa_rugosa	Rorug02G0345000 Rorug02G0345100 Rorug02G0345200 Rorug02G0597700
rosa_samantha	Rh2AG392600 Rh2AG675100 Rh2BG400200 Rh2BG686300 Rh2CG379300 Rh2CG649500 Rh2DG415200 Rh2DG700400
rosa_wichuraiana	Rw2G032160 Rw2G055410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
Acc65I	GGTACC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	397
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	397
AfaI	GTAC	2 cut(s)	65, 230
AfiI	CCNNNNNNNGG	2 cut(s)	238, 317
AluBI	AGCT	3 cut(s)	179, 272, 278
AluI	AGCT	3 cut(s)	179, 272, 278
Alw26I	GTCTC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	228
BccI	CCATC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	163, 230
BmrI	ACTGGG	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	314, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 317
Bse1I	ACTGG	2 cut(s)	20, 268
BseDI	CCNNGG	2 cut(s)	314, 342
BseLI	CCNNNNNNNGG	2 cut(s)	238, 317
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	20, 268
BseRI	GAGGAG	2 cut(s)	65, 68
Bsh1236I	CGCG	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	238, 317
BsmAI	GTCTC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	163, 230
BspT107I	GGYRCC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	20, 268
BssECI	CCNNGG	2 cut(s)	314, 342
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	192, 346
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	27, 261
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	64, 229
CviAII	CATG	3 cut(s)	101, 234, 429
CviJI	RGCY	5 cut(s)	5, 164, 179, 272, 278
CviKI_1	RGCY	5 cut(s)	5, 164, 179, 272, 278
CviQI	GTAC	2 cut(s)	64, 229
DdeI	CTNAG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	3 cut(s)	104, 237, 432
FaiI	YATR	7 cut(s)	102, 111, 126, 128, 140, 235, 430
FatI	CATG	3 cut(s)	100, 233, 428
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	104, 237, 432
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	218, 315, 409
HpyCH4III	ACNGT	2 cut(s)	192, 346
HpyCH4V	TGCA	2 cut(s)	237, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	104, 237, 432
HspAI	GCGC	1 cut(s)	150
KpnI	GGTACC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	161, 394
LpnPI	CCDG	7 cut(s)	33, 52, 181, 223, 249, 381, 393
MaeI	CTAG	1 cut(s)	407
MbiI	CCGCTC	1 cut(s)	397
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	8 cut(s)	43, 46, 108, 256, 295, 299, 321, 379
MseI	TTAA	1 cut(s)	81
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	416
NlaIII	CATG	3 cut(s)	104, 237, 432
NlaIV	GGNNCC	2 cut(s)	163, 230
PagI	TCATGA	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	163, 230
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
RsaI	GTAC	2 cut(s)	65, 230
RsaNI	GTAC	2 cut(s)	64, 229
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	308
SetI	ASST	7 cut(s)	174, 181, 274, 280, 313, 382, 390
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	397
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	192, 346
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	27, 268
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	2 cut(s)	27, 268
VpaK11BI	GGWCC	1 cut(s)	308
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.