Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000468.1

Orthogroup ID

OG0005131

Physical Location & Seq

Genomic Coordinates Reverse (-)

37176 .. 38231

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000468.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ctgagagggccgatcgaaatccacccaccgtcgcggccagatggtctgaccccccaaacaacagaccctcttcttcctctctggatcacggtttgggcccaagttggaatctgcccgagccgtgaaacgatcatggcagctctaatgtaccagatattgtcgtcctcagcgctggtatctctgggactctatcatatggtggccaccacccgcaactacctgaaatctccccagtcctattccgctaagccctatcatccctttcctctctcatcttcttcccctaatcatcgcctcaggtacgtccagctgttcctcatcaccgcctgccttatcgtcgccgtcgtccaccaggcggcggcctccttggacgctgacccactcctcaagggccgcacccctgtccaccgcttcacctccctccagtccgccgctgctctcttcctctttctgctcctcacgctcgccatcctcctctccgagtgcgccccttctctgctccccctctccaccgatctcatcttcggcctcgccgccgcgctcttctacatccactccttcatctctcgggaagctgcctccgtccagacctccgatctgcaggccaagtgcgattccgtctccggccgggtctccgcactggcctccctgctctgccttgtcttggcctgccagcccaagctctttgttgctgatgtgggtttgggcgctgccatgtccctgcagggcctctgggtcttgcagaccgggctctccctttacgcggatgccttcatccctgagggctgccacaagctacttgatgtcgtcagcggggttgagggttcaaccaagtgcgacctggatgagtcccgcttcagggcagttgctattttggatctcttgtttctggtgcacgtcatgtttgtgttgctcattatgctggtcgtccatgcagtggttgccaagtctgttggcatccgcaagttggcttcttacgaggccttgcctaccgctgtgcccgacaacaaccacaatcatattcagatgaaagccttgagcggcacccaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

351

Amino Acids

37.82

Weight (kDa)

7.77

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13890 AT5G13890 AT5G13890
fragaria_vesca	FvH4_6g31080
malus_domestica	MD09G1001100.v1.1 MD17G1004200.v1.1
prunus_persica	Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1 Prupe.7G011800_v2.0.a1
pyrus_communis	pycom111g00090
rosa_chinensis	RchiOBHm_Chr2g0137761 RchiOBHm_Chr2g0176701
rosa_laevigata	RLG00000019674 RLG00000022437
rosa_multiflora	Rmu_co8159502.1_g000001 Rmu_ssc0000468.1_g000007
rosa_rugosa	Rorug02G0345000 Rorug02G0345100 Rorug02G0345200 Rorug02G0597700
rosa_samantha	Rh2AG392600 Rh2AG675100 Rh2BG400200 Rh2BG686300 Rh2CG379300 Rh2CG649500 Rh2DG415200 Rh2DG700400
rosa_wichuraiana	Rw2G032160 Rw2G055410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1043
AccB7I	CCANNNNNTGG	1 cut(s)	937
AccBSI	CCGCTC	1 cut(s)	1041
AccII	CGCG	3 cut(s)	34, 539, 764
AclWI	GGATC	2 cut(s)	92, 885
AcoI	YGGCCR	3 cut(s)	35, 201, 625
AcuI	CTGAAG	1 cut(s)	841
AfaI	GTAC	2 cut(s)	149, 302
AfeI	AGCGCT	1 cut(s)	171
AfiI	CCNNNNNNNGG	8 cut(s)	355, 358, 664, 763, 858, 859, 937, 967
AgsI	TTSAA	1 cut(s)	828
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	3 cut(s)	351, 840, 1047
AluBI	AGCT	5 cut(s)	140, 310, 575, 682, 796
AluI	AGCT	5 cut(s)	140, 310, 575, 682, 796
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	2 cut(s)	625, 637
Alw44I	GTGCAC	1 cut(s)	893
AlwI	GGATC	2 cut(s)	92, 885
Ama87I	CYCGRG	2 cut(s)	115, 567
Aor51HI	AGCGCT	1 cut(s)	171
ApaI	GGGCCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	893
ApeKI	GCWGC	5 cut(s)	137, 434, 575, 710, 786
AspLEI	GCGC	4 cut(s)	172, 488, 541, 710
AspS9I	GGNCC	5 cut(s)	8, 96, 97, 391, 727
AsuC2I	CCSGG	2 cut(s)	629, 748
AsuHPI	GGTGA	2 cut(s)	313, 406
AvaI	CYCGRG	2 cut(s)	115, 567
AxyI	CCTNAGG	2 cut(s)	296, 780
BaeGI	GKGCMC	3 cut(s)	100, 897, 1002
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	1043
BanII	GRGCYC	2 cut(s)	100, 753
Bbv12I	GWGCWC	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	5 cut(s)	149, 421, 562, 697, 773
BccI	CCATC	2 cut(s)	35, 476
BceAI	ACGGC	2 cut(s)	105, 326
BciT130I	CCWGG	3 cut(s)	353, 842, 1049
BcnI	CCSGG	2 cut(s)	629, 748
BcoDI	GTCTC	2 cut(s)	625, 637
BfmI	CTRYAG	2 cut(s)	599, 722
BfoI	RGCGCY	2 cut(s)	173, 711
BlpI	GCTNAGC	1 cut(s)	246
Bme1390I	CCNGG	5 cut(s)	353, 629, 748, 842, 1049
BmeT110I	CYCGRG	2 cut(s)	115, 567
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	5 cut(s)	8, 96, 97, 391, 727
BmiI	GGNNCC	2 cut(s)	98, 1045
BmrFI	CCNGG	5 cut(s)	353, 629, 748, 842, 1049
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	757, 966
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	629, 748
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	366, 1047
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	8 cut(s)	355, 358, 664, 763, 858, 859, 937, 967
Bse1I	ACTGG	3 cut(s)	232, 424, 645
Bse21I	CCTNAGG	2 cut(s)	296, 780
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	353, 842, 1049
BseDI	CCNNGG	2 cut(s)	366, 1047
BseGI	GGATG	7 cut(s)	256, 468, 549, 772, 774, 850, 957
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	8 cut(s)	355, 358, 664, 763, 858, 859, 937, 967
BseMII	CTCAG	3 cut(s)	180, 310, 771
BseNI	ACTGG	3 cut(s)	232, 424, 645
BseRI	GAGGAG	3 cut(s)	374, 446, 464
BseSI	GKGCMC	3 cut(s)	100, 897, 1002
BseX3I	CGGCCG	1 cut(s)	625
BseXI	GCAGC	5 cut(s)	149, 421, 562, 697, 773
Bsh1236I	CGCG	3 cut(s)	34, 539, 764
Bsh1285I	CGRYCG	2 cut(s)	15, 628
BshNI	GGYRCC	1 cut(s)	1043
BsiEI	CGRYCG	2 cut(s)	15, 628
BsiHKAI	GWGCWC	1 cut(s)	897
BsiHKCI	CYCGRG	2 cut(s)	115, 567
BsiSI	CCGG	3 cut(s)	624, 628, 747
BslFI	GGGAC	3 cut(s)	198, 703, 835
BslI	CCNNNNNNNGG	8 cut(s)	355, 358, 664, 763, 858, 859, 937, 967
BsmAI	GTCTC	2 cut(s)	625, 637
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	3 cut(s)	198, 703, 835
Bso31I	GGTCTC	1 cut(s)	637
BsoBI	CYCGRG	2 cut(s)	115, 567
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	4 cut(s)	100, 753, 897, 1002
Bsp143I	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
Bsp1720I	GCTNAGC	1 cut(s)	246
BspCNI	CTCAG	3 cut(s)	179, 309, 772
BspFNI	CGCG	3 cut(s)	34, 539, 764
BspLI	GGNNCC	2 cut(s)	98, 1045
BspMAI	CTGCAG	2 cut(s)	603, 726
BspPI	GGATC	2 cut(s)	92, 885
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	1041
BsrI	ACTGG	3 cut(s)	232, 424, 645
BssECI	CCNNGG	2 cut(s)	366, 1047
BssMI	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	353, 842, 1049
Bst4CI	ACNGT	2 cut(s)	30, 91
Bst6I	CTCTTC	3 cut(s)	75, 446, 548
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstC8I	GCNNGC	5 cut(s)	328, 465, 603, 670, 674
BstDEI	CTNAG	6 cut(s)	2, 166, 246, 296, 780, 1053
BstF5I	GGATG	7 cut(s)	256, 468, 549, 772, 774, 850, 957
BstFNI	CGCG	3 cut(s)	34, 539, 764
BstH2I	RGCGCY	2 cut(s)	173, 711
BstHHI	GCGC	4 cut(s)	172, 488, 541, 710
BstKTI	GATC	6 cut(s)	15, 87, 132, 517, 598, 880
BstMAI	GTCTC	2 cut(s)	625, 637
BstMBI	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
BstMCI	CGRYCG	2 cut(s)	15, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	460, 748, 919, 941
BstNI	CCWGG	3 cut(s)	353, 842, 1049
BstSCI	CCNGG	5 cut(s)	351, 627, 746, 840, 1047
BstSFI	CTRYAG	2 cut(s)	599, 722
BstSLI	GKGCMC	3 cut(s)	100, 897, 1002
BstUI	CGCG	3 cut(s)	34, 539, 764
BstV1I	GCAGC	5 cut(s)	149, 421, 562, 697, 773
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BstZI	CGGCCG	1 cut(s)	625
Bsu36I	CCTNAGG	2 cut(s)	296, 780
BtgZI	GCGATG	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	7 cut(s)	256, 468, 549, 772, 774, 850, 957
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	2 cut(s)	638, 942
Cac8I	GCNNGC	5 cut(s)	328, 465, 603, 670, 674
CfoI	GCGC	4 cut(s)	172, 488, 541, 710
Cfr13I	GGNCC	5 cut(s)	8, 96, 97, 391, 727
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	148, 301
CviAII	CATG	4 cut(s)	133, 715, 901, 932
CviQI	GTAC	2 cut(s)	148, 301
DdeI	CTNAG	6 cut(s)	2, 166, 246, 296, 780, 1053
DpnI	GATC	6 cut(s)	14, 86, 131, 516, 597, 879
DpnII	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
EaeI	YGGCCR	3 cut(s)	35, 201, 625
EagI	CGGCCG	1 cut(s)	625
Eam1104I	CTCTTC	3 cut(s)	75, 446, 548
EarI	CTCTTC	3 cut(s)	75, 446, 548
EciI	GGCGGA	1 cut(s)	418
EclXI	CGGCCG	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	983
Eco24I	GRGCYC	2 cut(s)	100, 753
Eco31I	GGTCTC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	841
Eco81I	CCTNAGG	2 cut(s)	296, 780
Eco88I	CYCGRG	2 cut(s)	115, 567
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	3 cut(s)	351, 840, 1047
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	100, 753
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	4 cut(s)	136, 718, 904, 935
FaiI	YATR	8 cut(s)	134, 195, 197, 716, 902, 920, 933, 1020
FaqI	GGGAC	3 cut(s)	198, 703, 835
FatI	CATG	4 cut(s)	132, 714, 900, 931
FauI	CCCGC	3 cut(s)	218, 806, 860
FauNDI	CATATG	1 cut(s)	195
FokI	GGATG	7 cut(s)	243, 455, 536, 761, 779, 857, 944
FriOI	GRGCYC	2 cut(s)	100, 753
GlaI	GCGC	4 cut(s)	171, 487, 540, 709
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	2 cut(s)	173, 711
HapII	CCGG	3 cut(s)	624, 628, 747
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	4 cut(s)	172, 488, 541, 710
Hin1II	CATG	4 cut(s)	136, 718, 904, 935
Hin6I	GCGC	4 cut(s)	170, 486, 539, 708
HinP1I	GCGC	4 cut(s)	170, 486, 539, 708
HinfI	GANTC	4 cut(s)	108, 186, 614, 848
HpaII	CCGG	3 cut(s)	624, 628, 747
HphI	GGTGA	2 cut(s)	313, 406
Hpy166II	GTNNAC	3 cut(s)	349, 406, 895
Hpy188I	TCNGA	4 cut(s)	48, 481, 595, 1026
Hpy188III	TCNNGA	3 cut(s)	82, 569, 586
Hpy8I	GTNNAC	3 cut(s)	349, 406, 895
Hpy99I	CGWCG	3 cut(s)	34, 341, 347
HpyAV	CCTTC	3 cut(s)	501, 568, 781
HpyCH4III	ACNGT	2 cut(s)	30, 91
HpyCH4IV	ACGT	2 cut(s)	303, 897
HpyCH4V	TGCA	5 cut(s)	601, 724, 742, 895, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	460, 748, 919, 941
HpyF3I	CTNAG	6 cut(s)	2, 166, 246, 296, 780, 1053
HpySE526I	ACGT	2 cut(s)	303, 897
Hsp92II	CATG	4 cut(s)	136, 718, 904, 935
HspAI	GCGC	4 cut(s)	170, 486, 539, 708
Kzo9I	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	2 cut(s)	459, 504
Lsp1109I	GCAGC	5 cut(s)	149, 421, 562, 697, 773
LweI	GCATC	2 cut(s)	757, 966
MaeII	ACGT	2 cut(s)	303, 897
MalI	GATC	6 cut(s)	14, 86, 131, 516, 597, 879
MbiI	CCGCTC	1 cut(s)	1041
MboI	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
MboII	GAAGA	7 cut(s)	62, 65, 267, 270, 433, 514, 535
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	4 cut(s)	100, 753, 897, 1002
MlsI	TGGCCA	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	180, 857
MmeI	TCCRAC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	905
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	4 cut(s)	310, 434, 813, 995
MspI	CCGG	3 cut(s)	624, 628, 747
MspR9I	CCNGG	5 cut(s)	353, 629, 748, 842, 1049
MvaI	CCWGG	3 cut(s)	353, 842, 1049
MvnI	CGCG	3 cut(s)	34, 539, 764
MwoI	GCNNNNNNNGC	4 cut(s)	460, 748, 919, 941
NciI	CCSGG	2 cut(s)	629, 748
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
NlaIII	CATG	4 cut(s)	136, 718, 904, 935
NlaIV	GGNNCC	2 cut(s)	98, 1045
PceI	AGGCCT	1 cut(s)	983
PciSI	GCTCTTC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	108, 614
PflMI	CCANNNNNTGG	1 cut(s)	937
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	2 cut(s)	180, 856
PpsI	GAGTC	2 cut(s)	180, 856
Psp6I	CCWGG	3 cut(s)	351, 840, 1047
PspGI	CCWGG	3 cut(s)	351, 840, 1047
PspN4I	GGNNCC	2 cut(s)	98, 1045
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	5 cut(s)	8, 96, 97, 391, 727
PstI	CTGCAG	2 cut(s)	603, 726
PsuI	RGATCY	1 cut(s)	877
PvuI	CGATCG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	149, 302
RsaNI	GTAC	2 cut(s)	148, 301
RseI	CAYNNNNRTG	1 cut(s)	905
SapI	GCTCTTC	1 cut(s)	548
Sau3AI	GATC	6 cut(s)	12, 84, 129, 514, 595, 877
Sau96I	GGNCC	5 cut(s)	8, 96, 97, 391, 727
SbfI	CCTGCAGG	1 cut(s)	726
SchI	GAGTC	2 cut(s)	180, 857
ScrFI	CCNGG	5 cut(s)	353, 629, 748, 842, 1049
SdaI	CCTGCAGG	1 cut(s)	726
SduI	GDGCHC	4 cut(s)	100, 753, 897, 1002
SfaNI	GCATC	2 cut(s)	757, 966
SfcI	CTRYAG	2 cut(s)	599, 722
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	2 cut(s)	386, 1036
SmoI	CTYRAG	2 cut(s)	386, 1036
Sse8387I	CCTGCAGG	1 cut(s)	726
SseBI	AGGCCT	1 cut(s)	983
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	5 cut(s)	351, 627, 746, 840, 1047
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	30, 91
TaiI	ACGT	2 cut(s)	306, 900
TaqI	TCGA	1 cut(s)	15
TauI	GCSGC	8 cut(s)	37, 359, 362, 396, 434, 536, 539, 1044
TfiI	GAWTC	2 cut(s)	108, 614
TscAI	CASTG	2 cut(s)	645, 942
TseI	GCWGC	5 cut(s)	137, 434, 575, 710, 786
TspDTI	ATGAA	3 cut(s)	550, 763, 1043
TspGWI	ACGGA	2 cut(s)	571, 607
TspRI	CASTG	2 cut(s)	645, 942
Van91I	CCANNNNNTGG	1 cut(s)	937
VneI	GTGCAC	1 cut(s)	893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.