Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8164376.1

Orthogroup ID

OG0011209

Physical Location & Seq

Genomic Coordinates Reverse (-)

142 .. 582

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8164376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgaaggagctagaagacatggagaaacagaaatccctaatagaccagaaagccgattccttggtgcgcagggaactgtggttggggcttggctatctcgttgtccaaacagccgggttcatgaggctgaccttttgggaactctcatgggatgtgatggaacccatctgtttctatgtgacttcaatgtacttcatggcttgctatgcctttttcctcaggacctccaaagagccctctttcgaaggcttcttccagagccgttttgatgccaagcagaagaaattgatgaaggatcacaatttcgatttgggtaggtatgaggagcttagaaaagcttgttaccctttctcttcttcttcgtcggagttaggcaacccatcaactgcttttgatggaactaagaggatgcaaatgaagtttggttccaatgttctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008150 GO:0015291 GO:0015292 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

ko04020 ko04218 ko04621 map04020 map04218 map04621

Pfam Domains

Protein Families

MCU

Protein Analysis

146

Amino Acids

17.17

Weight (kDa)

7.65

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23790 AT4G36820 AT5G66650
fragaria_vesca	FvH4_1g14090
malus_domestica	MD02G1155000.v1.1 MD15G1269400.v1.1 MD15G1269500.v1.1
prunus_persica	Prupe.7G148300_v2.0.a1
pyrus_communis	pycom02g12270 pycom15g23380
rosa_chinensis	RchiOBHm_Chr2g0102751
rosa_laevigata	RLG00000017177
rosa_multiflora	Rmu_co8164376.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140340
rosa_rugosa	Rorug02G0109400
rosa_samantha	Rh2AG157700 Rh2BG164200 Rh2CG163900 Rh2DG163000
rosa_wichuraiana	Rw2G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	68
AclWI	GGATC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	3 cut(s)	10, 328, 338
AluI	AGCT	3 cut(s)	10, 328, 338
AlwI	GGATC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	4 cut(s)	151, 173, 388, 389
BceAI	ACGGC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	162, 427
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	259, 399
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	60
Bse21I	CCTNAGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	157, 414
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	162, 427
BspPI	GGATC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	218, 329, 402
BstF5I	GGATG	2 cut(s)	157, 414
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	157, 414
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	19, 121, 147, 196
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	218, 329, 402
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	4 cut(s)	22, 124, 150, 199
FaiI	YATR	8 cut(s)	20, 122, 148, 177, 197, 207, 321, 439
FatI	CATG	4 cut(s)	18, 120, 146, 195
FokI	GGATG	2 cut(s)	164, 421
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	22, 124, 150, 199
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	3 cut(s)	121, 220, 256
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	239, 286
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	218, 329, 402
Hsp92II	CATG	4 cut(s)	22, 124, 150, 199
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	7, 325
LpnPI	CCDG	5 cut(s)	55, 59, 127, 205, 269
LweI	GCATC	2 cut(s)	259, 399
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	178, 341
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	6 cut(s)	26, 244, 292, 345, 348, 351
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	284, 301
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	117, 227, 235, 247, 316, 399
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	22, 124, 150, 199
NlaIV	GGNNCC	2 cut(s)	162, 427
NmuCI	GTSAC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	243
PagI	TCATGA	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	162, 427
PspPI	GGNCC	1 cut(s)	222
PspPPI	RGGWCCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	12, 134, 227, 320, 330, 340
SfaNI	GCATC	2 cut(s)	259, 399
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	284, 301
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	243, 306
TasI	AATT	2 cut(s)	284, 301
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	5 cut(s)	17, 109, 184, 305, 431
VpaK11BI	GGWCC	1 cut(s)	222
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.