Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8179138.1

Orthogroup ID

OG0011518

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 683

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8179138.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 683 bp

caggaactggatttggctaagaattctttcacagggaaagtacctgacttgggttctttgagtcaattgaggctgttgagtttgaatgctagtggggtgtctggactttttccatggaaatcactggagaatctgacggagttaacttttctgagccttggtgataacagattcgatgaaagtcctattacaatggagttgggaaagcatgacaagctttactggctttacctctcaaattgtagcatcacaggtgaaatcccagagggcattggaaacctgactctgctcgagaatctggagctttcggataaccacttggttggggaaattcctcagagtattacaaatctcaagaagctcaggcaactcgagctttatgctaattccctgaccgggaaaatcccagttgggcttggcaacctcacaagccttaggaattttgatgtttcaaataacaagcttgagggtgatctctctgagctcaaatccttgacagggcttgagtctgtgcagctttatgagaatcacttagttggcgaagttccggaggagtttggagagttcaataacctttatcagctctcactttacaagaacaagctcactggccctcttcctcagaagcttggttcttggtctggcctggagtacattgatgtttcagagaactacttgactgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

4.64

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02540 FvH4_2g02540
malus_domestica	MD05G1112600.v1.1 MD10G1115100.v1.1
prunus_persica	Prupe.8G157200_v2.0.a1
pyrus_communis	pycom05g10800 pycom10g09960
rosa_chinensis	RchiOBHm_Chr6g0246351
rosa_laevigata	RLG00000015262
rosa_multiflora	Rmu_co8179138.1_g000001 Rmu_sc0001066.1_g000007 Rmu_sc0008965.1_g000004
rosa_roxburghii	Rroxscaffold_7G00214660
rosa_rugosa	Rorug05G0520400
rosa_samantha	Rh6AG034600 Rh6BG029700 Rh6CG030100 Rh6DG029000
rosa_wichuraiana	Rw6G002800 Rw6G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	547
AcsI	RAATTY	3 cut(s)	22, 330, 439
AfaI	GTAC	2 cut(s)	42, 653
AfiI	CCNNNNNNNGG	3 cut(s)	50, 396, 498
AgsI	TTSAA	3 cut(s)	85, 453, 568
AjnI	CCWGG	1 cut(s)	645
Alw21I	GWGCWC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	7
Ama87I	CYCGRG	2 cut(s)	290, 371
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	2 cut(s)	610, 643
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	3 cut(s)	22, 330, 439
Asp700I	GAANNNNTTC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	611
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	173, 266, 482
AvaI	CYCGRG	2 cut(s)	290, 371
AxyI	CCTNAGG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	647
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	397, 647
BmeT110I	CYCGRG	2 cut(s)	290, 371
BmgT120I	GGNCC	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	397, 647
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	401
BpmI	CTGGAG	3 cut(s)	146, 320, 668
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	338, 485, 524
BpuMI	CCSGG	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	113, 157
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 396, 498
Bse1I	ACTGG	5 cut(s)	12, 129, 227, 407, 613
Bse21I	CCTNAGG	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	113, 157
BseLI	CCNNNNNNNGG	3 cut(s)	50, 396, 498
BseMII	CTCAG	5 cut(s)	143, 350, 376, 471, 635
BseNI	ACTGG	5 cut(s)	12, 129, 227, 407, 613
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	2 cut(s)	612, 645
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	2 cut(s)	290, 371
BsiSI	CCGG	2 cut(s)	396, 548
BslI	CCNNNNNNNGG	3 cut(s)	50, 396, 498
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	612, 645
BsoBI	CYCGRG	2 cut(s)	290, 371
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	113
BspANI	GGCC	2 cut(s)	612, 645
BspCNI	CTCAG	5 cut(s)	144, 349, 375, 472, 634
BspEI	TCCGGA	1 cut(s)	547
BsrI	ACTGG	5 cut(s)	12, 129, 227, 407, 613
BssECI	CCNNGG	2 cut(s)	113, 157
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	2 cut(s)	113, 157
Bst2UI	CCWGG	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	621
BstDEI	CTNAG	8 cut(s)	18, 152, 336, 362, 434, 480, 532, 621
BstDSI	CCRYGG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 223, 373
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	395, 645
BstV1I	GCAGC	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	612, 645
BtgI	CCRYGG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	122, 606
CaiI	CAGNNNCTG	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	41, 652
CviAII	CATG	2 cut(s)	114, 209
CviQI	GTAC	2 cut(s)	41, 652
DdeI	CTNAG	8 cut(s)	18, 152, 336, 362, 434, 480, 532, 621
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	113, 157
Eco24I	GRGCYC	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	484
Eco81I	CCTNAGG	1 cut(s)	434
Eco88I	CYCGRG	2 cut(s)	290, 371
EcoICRI	GAGCTC	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	113, 157
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	2 cut(s)	113, 157
FaeI	CATG	2 cut(s)	117, 212
FaiI	YATR	4 cut(s)	115, 210, 381, 522
FatI	CATG	2 cut(s)	113, 208
Fnu4HI	GCNGC	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	515
GsuI	CTGGAG	3 cut(s)	146, 320, 668
HaeIII	GGCC	2 cut(s)	612, 645
HapII	CCGG	2 cut(s)	396, 548
Hin1II	CATG	2 cut(s)	117, 212
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	3 cut(s)	215, 461, 626
HinfI	GANTC	7 cut(s)	61, 130, 171, 283, 295, 506, 526
HpaI	GTTAAC	1 cut(s)	144
HpaII	CCGG	2 cut(s)	396, 548
HphI	GGTGA	3 cut(s)	173, 266, 482
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	7 cut(s)	135, 153, 310, 339, 481, 624, 667
Hpy188III	TCNNGA	5 cut(s)	102, 292, 299, 355, 548
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 223, 373
HpyF3I	CTNAG	8 cut(s)	18, 152, 336, 362, 434, 480, 532, 621
Hsp92II	CATG	2 cut(s)	117, 212
Kpn2I	TCCGGA	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	90
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	1 cut(s)	608
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	6 cut(s)	22, 65, 238, 330, 385, 439
MlyI	GAGTC	3 cut(s)	70, 277, 515
MnlI	CCTC	9 cut(s)	63, 242, 259, 345, 434, 460, 544, 624, 630
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	143
MspI	CCGG	2 cut(s)	396, 548
MspR9I	CCNGG	2 cut(s)	397, 647
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	214, 223, 373
NciI	CCSGG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	117, 212
PaeR7I	CTCGAG	2 cut(s)	290, 371
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	130, 171, 295, 526
PkrI	GCNGC	1 cut(s)	516
PleI	GAGTC	3 cut(s)	69, 277, 514
PpsI	GAGTC	3 cut(s)	69, 277, 514
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	611
PspXI	VCTCGAGB	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	7
RsaI	GTAC	2 cut(s)	42, 653
RsaNI	GTAC	2 cut(s)	41, 652
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	3 cut(s)	70, 277, 515
ScrFI	CCNGG	2 cut(s)	397, 647
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	2 cut(s)	290, 371
SlaI	CTCGAG	2 cut(s)	290, 371
SmlI	CTYRAG	5 cut(s)	290, 353, 371, 464, 503
SmoI	CTYRAG	5 cut(s)	290, 353, 371, 464, 503
Sse9I	AATT	6 cut(s)	22, 65, 238, 330, 385, 439
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	395, 645
StyI	CCWWGG	2 cut(s)	113, 157
TaqI	TCGA	3 cut(s)	174, 291, 372
TasI	AATT	6 cut(s)	22, 65, 238, 330, 385, 439
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	4 cut(s)	130, 171, 295, 526
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	129, 613
TseI	GCWGC	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	129, 613
XapI	RAATTY	3 cut(s)	22, 330, 439
XhoI	CTCGAG	2 cut(s)	290, 371
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.