Rorug05G0520400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011518
Physical Location & Seq
Forward (+)
70557454 .. 70558532
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0520400.1

Sequence Viewer

Length: 465 bp
ATGGGCAACAGTCTAAGGTGTTGTTTGGCTTGTGTTCTACCTTGTGGAGCTCTAGACTTGATCCGAATAGTCCATTTAAACGGCTACGTAGAAGAAATCACACGTCCGGTCACTGCCGGCGAGATCCTTGCCGCCAATCCAAATCACTTCCTGAGCAAACCCTGTTCACAAGGCGTCGTTCGCCGCATTTTGATTCTCTTGCCGGAGTCGGAGCTCAAGCGAGGCAGCATATACTTCTTGATTCCGGAGTCTTCGATACCTGACAGTAAGAAGAAGAACAAAGGTAGTAGCGGCGTTAAGAAGTCGTCAAAGAAGAGACTAAGGCATCACCACGTCTCGGAGTGTGATCGATACTTGACGGAGATCGTTTCGGAAAAGAAAAAATCTTCATCACGTAGGGATCGCCGGACTGGACGATCGGTCGGAGCATTTCAGCCTCATCTTGAGAGCATTTCCGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.16

Weight (kDa)

9.66

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 153 4.8e-37 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 3 cut(s) 132, 184, 291
AclWI GGATC 3 cut(s) 55, 118, 408
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 101
AhdI GACNNNNNGTC 1 cut(s) 419
AjiI CACGTC 2 cut(s) 104, 334
AluBI AGCT 2 cut(s) 50, 214
AluI AGCT 2 cut(s) 50, 214
Alw21I GWGCWC 2 cut(s) 52, 216
Alw26I GTCTC 2 cut(s) 310, 340
AlwI GGATC 3 cut(s) 55, 118, 408
Aor13HI TCCGGA 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 320
BanII GRGCYC 2 cut(s) 52, 216
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 52, 216
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 2 cut(s) 310, 340
BfaI CTAG 1 cut(s) 53
BisI GCNGC 4 cut(s) 132, 184, 226, 292
BlsI GCNGC 4 cut(s) 133, 185, 227, 293
BmeRI GACNNNNNGTC 1 cut(s) 419
BmgBI CACGTC 2 cut(s) 104, 334
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 200, 464
Bsa29I ATCGAT 1 cut(s) 349
BsaAI YACGTR 2 cut(s) 88, 395
BsaHI GRCGYC 1 cut(s) 174
BsaWI WCCGGW 2 cut(s) 106, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 1 cut(s) 237
Bsh1285I CGRYCG 2 cut(s) 419, 423
BshVI ATCGAT 1 cut(s) 349
BsiEI CGRYCG 2 cut(s) 419, 423
BsiHKAI GWGCWC 2 cut(s) 52, 216
BsiSI CCGG 5 cut(s) 107, 117, 203, 245, 406
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 310, 340
BsmBI CGTCTC 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 52, 216
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 6 cut(s) 60, 123, 346, 363, 400, 416
BspACI CCGC 3 cut(s) 132, 184, 291
BspCNI CTCAG 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 349
BspEI TCCGGA 1 cut(s) 244
BspPI GGATC 3 cut(s) 55, 118, 408
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 6 cut(s) 60, 123, 346, 363, 400, 416
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 11, 266
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 174
BstBAI YACGTR 2 cut(s) 88, 395
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 3 cut(s) 14, 152, 320
BstKTI GATC 6 cut(s) 63, 126, 349, 366, 403, 419
BstMAI GTCTC 2 cut(s) 310, 340
BstMBI GATC 6 cut(s) 60, 123, 346, 363, 400, 416
BstMCI CGRYCG 2 cut(s) 419, 423
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 349
BsuTUI ATCGAT 1 cut(s) 349
BtrI CACGTC 2 cut(s) 104, 334
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 349
CseI GACGC 1 cut(s) 163
CviJI RGCY 5 cut(s) 29, 50, 84, 214, 436
CviKI_1 RGCY 5 cut(s) 29, 50, 84, 214, 436
DdeI CTNAG 3 cut(s) 14, 152, 320
DpnI GATC 6 cut(s) 62, 125, 348, 365, 402, 418
DpnII GATC 6 cut(s) 60, 123, 346, 363, 400, 416
DraI TTTAAA 1 cut(s) 78
DriI GACNNNNNGTC 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 308
Eam1105I GACNNNNNGTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 2 cut(s) 50, 214
Eco105I TACGTA 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 52, 216
Eco53kI GAGCTC 2 cut(s) 50, 214
EcoICRI GAGCTC 2 cut(s) 50, 214
EcoT38I GRGCYC 2 cut(s) 52, 216
Esp3I CGTCTC 1 cut(s) 340
FaiI YATR 2 cut(s) 230, 232
Fnu4HI GCNGC 4 cut(s) 132, 184, 226, 292
FriOI GRGCYC 2 cut(s) 52, 216
Fsp4HI GCNGC 4 cut(s) 132, 184, 226, 292
FspBI CTAG 1 cut(s) 53
GluI GCNGC 4 cut(s) 132, 184, 226, 292
HapII CCGG 5 cut(s) 107, 117, 203, 245, 406
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
HinfI GANTC 4 cut(s) 193, 206, 241, 248
HpaII CCGG 5 cut(s) 107, 117, 203, 245, 406
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 6 cut(s) 65, 211, 340, 373, 425, 457
Hpy188III TCNNGA 5 cut(s) 53, 151, 238, 245, 443
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 11, 266
HpyCH4IV ACGT 4 cut(s) 87, 103, 333, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 14, 152, 320
HpySE526I ACGT 4 cut(s) 87, 103, 333, 394
Hsp92I GRCGYC 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 6 cut(s) 60, 123, 346, 363, 400, 416
LmnI GCTCC 3 cut(s) 47, 211, 425
LpnPI CCDG 9 cut(s) 120, 130, 164, 175, 216, 258, 273, 396, 419
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 53
MaeII ACGT 4 cut(s) 87, 103, 333, 394
MaeIII GTNAC 1 cut(s) 109
MalI GATC 6 cut(s) 62, 125, 348, 365, 402, 418
MboI GATC 6 cut(s) 60, 123, 346, 363, 400, 416
MboII GAAGA 6 cut(s) 104, 243, 283, 286, 325, 378
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 52, 216
MlyI GAGTC 2 cut(s) 215, 257
MmeI TCCRAC 2 cut(s) 189, 403
MnlI CCTC 2 cut(s) 215, 447
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 77, 297
MspI CCGG 5 cut(s) 107, 117, 203, 245, 406
MwoI GCNNNNNNNGC 1 cut(s) 180
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 6 cut(s) 60, 123, 346, 363, 400, 416
NgoMIV GCCGGC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 193, 241
PkrI GCNGC 4 cut(s) 133, 185, 227, 293
Ple19I CGATCG 1 cut(s) 419
PleI GAGTC 2 cut(s) 214, 256
PpsI GAGTC 2 cut(s) 214, 256
Ppu21I YACGTR 2 cut(s) 88, 395
Psp124BI GAGCTC 2 cut(s) 52, 216
PsuI RGATCY 1 cut(s) 123
PvuI CGATCG 1 cut(s) 419
SacI GAGCTC 2 cut(s) 52, 216
SaqAI TTAA 2 cut(s) 77, 297
SatI GCNGC 4 cut(s) 132, 184, 226, 292
Sau3AI GATC 6 cut(s) 60, 123, 346, 363, 400, 416
SchI GAGTC 2 cut(s) 215, 257
SduI GDGCHC 2 cut(s) 52, 216
SfaNI GCATC 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 215, 443
SmoI CTYRAG 2 cut(s) 215, 443
SnaBI TACGTA 1 cut(s) 88
SsiI CCGC 3 cut(s) 132, 184, 291
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 2 cut(s) 52, 216
TaaI ACNGT 2 cut(s) 11, 266
TaiI ACGT 4 cut(s) 90, 106, 336, 397
TaqI TCGA 2 cut(s) 254, 349
TaqII GACCGA 1 cut(s) 409
TauI GCSGC 3 cut(s) 134, 186, 294
TfiI GAWTC 2 cut(s) 193, 241
Tru1I TTAA 2 cut(s) 77, 297
Tru9I TTAA 2 cut(s) 77, 297
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 52
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.