Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225350.1

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 734

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 178 bp

atgttcaaagataagcaatggaagccactaacgcgtgaagtgaaaatctcggctgcaattctcagtccgtatcggcttctagtactagctcgactggtggtccttggattatttttgtattggagagtcacaaaccctaatgatgatgcagtgtggttgtggcttatgtctgtgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

59

Amino Acids

6.99

Weight (kDa)

9.99

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	98
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	80, 86
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	100
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 31
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	83
CviJI	RGCY	5 cut(s)	25, 53, 76, 89, 163
CviKI_1	RGCY	5 cut(s)	25, 53, 76, 89, 163
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	62
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaiI	YATR	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	80, 86
GluI	GCNGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	56, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 31
HpyF3I	CTNAG	1 cut(s)	62
LpnPI	CCDG	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	80, 86
MaeIII	GTNAC	1 cut(s)	127
MluCI	AATT	1 cut(s)	57
MluI	ACGCGT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	135
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	22, 31
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	135
SetI	ASST	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	136
SgeI	CNNG	8 cut(s)	45, 47, 61, 92, 98, 102, 107, 116
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	1 cut(s)	57
SspMI	CTAG	2 cut(s)	80, 86
StyI	CCWWGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	82
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	100
XspI	CTAG	2 cut(s)	80, 86
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.