Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305165.1

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Forward (+)

112 .. 905

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 794 bp

atgatggcctctaattacccaaatggatcctccaggtttaaccatcttaagcaaactagcaatgaccttgacagtgatgatattgggagtgttgagtttgcaacctacactgtccagatacccgccacaccggacaaccagtccgccggagtttccttgcagcggtccacttctcagagagttgaggaccagtatgcatccagttctttgtttacaggtggctacaactgcgttacacgagcccagttgaaggacaaagtgattgaatccgaaacaaagcatccccagatgacatgggccaaggggtcttattgtaccgtgcctggatgtgatgctcaggtggtgactgatgagaggggattggatatagtcccttgtgaatgcggttacaagatttgtatggattgttatagggatgctatgagaaatggtgagagtgtttgtccgggctgcacagaaccgtataaggagatggatatgaatgagtatggtgtgactagtcggcagcctttgctgtcaacggatgggatgtcaaagacggacaggaggatgtcgcttatgaaatcaaaatcgatgaagtcaaaagcgttggtggagagtcaggctattgaaatggatcagaatcagtggttgtttgagacaaaagggagttatggatatgggaatgctatgtggccaaaggaagatgtgagtgggagtcttgatgggatgagtggtgatcttaaaatgttcaaagataagcaatggaagccactaacgcgtgaagtgaaaatctcggctgcaattctcagtcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

265

Amino Acids

29.46

Weight (kDa)

5.24

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	760
AciI	CCGC	4 cut(s)	123, 144, 163, 384
AclWI	GGATC	3 cut(s)	21, 34, 624
AcoI	YGGCCR	1 cut(s)	674
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	162, 250
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	250, 266, 611, 733
AhdI	GACNNNNNGTC	1 cut(s)	139
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	32, 322
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	21, 34, 624
AoxI	GGCC	3 cut(s)	6, 297, 674
ApeKI	GCWGC	4 cut(s)	160, 450, 505, 779
AspS9I	GGNCC	3 cut(s)	165, 187, 297
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	355, 443, 728
AvaII	GGWCC	2 cut(s)	165, 187
BalI	TGGCCA	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	172, 437, 517, 766
BccI	CCATC	4 cut(s)	51, 466, 518, 698
BciT130I	CCWGG	2 cut(s)	34, 324
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	632
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	57, 498
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	4 cut(s)	161, 451, 506, 780
BlsI	GCNGC	4 cut(s)	162, 452, 507, 781
Bme1390I	CCNGG	3 cut(s)	34, 324, 447
Bme18I	GGWCC	2 cut(s)	165, 187
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	165, 187, 297
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	34, 324, 447
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	4 cut(s)	206, 289, 322, 406
BmuI	ACTGGG	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	447
Bsa29I	ATCGAT	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 250
Bse1I	ACTGG	4 cut(s)	139, 190, 201, 244
Bse3DI	GCAATG	2 cut(s)	67, 749
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	34, 324
BseCI	ATCGAT	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	8 cut(s)	197, 280, 332, 421, 529, 534, 555, 714
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	162, 250
BseMI	GCAATG	2 cut(s)	67, 749
BseMII	CTCAG	2 cut(s)	188, 350
BseNI	ACTGG	4 cut(s)	139, 190, 201, 244
BseXI	GCAGC	4 cut(s)	172, 437, 517, 766
BsgI	GTGCAG	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	3 cut(s)	8, 299, 676
BshVI	ATCGAT	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	131, 147, 446
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	162, 250
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	2 cut(s)	386, 670
BsnI	GGCC	3 cut(s)	8, 299, 676
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	26, 616, 718
BspACI	CCGC	4 cut(s)	123, 144, 163, 384
BspANI	GGCC	3 cut(s)	8, 299, 676
BspCNI	CTCAG	2 cut(s)	187, 349
BspDI	ATCGAT	1 cut(s)	572
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	3 cut(s)	21, 34, 624
BspTI	CTTAAG	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	67, 749
BsrI	ACTGG	4 cut(s)	139, 190, 201, 244
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	26, 616, 718
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	34, 324
Bst4CI	ACNGT	4 cut(s)	74, 112, 319, 462
BstAFI	CTTAAG	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	174, 336, 788
BstF5I	GGATG	8 cut(s)	197, 280, 332, 421, 529, 534, 555, 714
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	3 cut(s)	29, 619, 721
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	3 cut(s)	26, 616, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 511, 748, 757
BstNI	CCWGG	2 cut(s)	34, 324
BstSCI	CCNGG	3 cut(s)	32, 322, 445
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	4 cut(s)	172, 437, 517, 766
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	8, 299, 676
BsuTUI	ATCGAT	1 cut(s)	572
BtsCI	GGATG	8 cut(s)	197, 280, 332, 421, 529, 534, 555, 714
BtsIMutI	CAGTG	3 cut(s)	79, 108, 632
Cfr13I	GGNCC	3 cut(s)	165, 187, 297
ClaI	ATCGAT	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	294
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	3 cut(s)	174, 336, 788
DpnI	GATC	3 cut(s)	28, 618, 720
DpnII	GATC	3 cut(s)	26, 616, 718
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	674
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	165, 187
EcoRII	CCWGG	2 cut(s)	32, 322
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	297
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	1 cut(s)	293
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	161, 451, 506, 780
FokI	GGATG	8 cut(s)	184, 267, 339, 428, 536, 541, 562, 721
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	161, 451, 506, 780
FspBI	CTAG	2 cut(s)	57, 498
GluI	GCNGC	4 cut(s)	161, 451, 506, 780
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	8, 299, 676
HapII	CCGG	3 cut(s)	131, 147, 446
Hin1II	CATG	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	266, 598, 622, 697
HpaII	CCGG	3 cut(s)	131, 147, 446
HphI	GGTGA	3 cut(s)	355, 443, 728
Hpy166II	GTNNAC	3 cut(s)	168, 213, 519
Hpy188I	TCNGA	3 cut(s)	177, 271, 621
Hpy188III	TCNNGA	2 cut(s)	115, 701
Hpy8I	GTNNAC	3 cut(s)	168, 213, 519
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	4 cut(s)	74, 112, 319, 462
HpyCH4V	TGCA	5 cut(s)	101, 160, 197, 453, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 511, 748, 757
HpyF3I	CTNAG	3 cut(s)	174, 336, 788
Hsp92II	CATG	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	26, 616, 718
Lsp1109I	GCAGC	4 cut(s)	172, 437, 517, 766
LweI	GCATC	4 cut(s)	206, 289, 322, 406
MaeI	CTAG	2 cut(s)	57, 498
MaeIII	GTNAC	4 cut(s)	232, 343, 386, 493
MalI	GATC	3 cut(s)	28, 618, 720
MboI	GATC	3 cut(s)	26, 616, 718
MboII	GAAGA	1 cut(s)	695
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	676
MluCI	AATT	2 cut(s)	13, 783
MluI	ACGCGT	1 cut(s)	758
MluNI	TGGCCA	1 cut(s)	676
MlyI	GAGTC	2 cut(s)	607, 706
MnlI	CCTC	5 cut(s)	19, 40, 178, 348, 540
Mox20I	TGGCCA	1 cut(s)	676
Mph1103I	ATGCAT	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	676
MseI	TTAA	3 cut(s)	39, 48, 723
Msp20I	TGGCCA	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	163
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	3 cut(s)	131, 147, 446
MspR9I	CCNGG	3 cut(s)	34, 324, 447
Mva1269I	GAATGC	2 cut(s)	386, 670
MvaI	CCWGG	2 cut(s)	34, 324
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	4 cut(s)	228, 511, 748, 757
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	26, 616, 718
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	755
NmuCI	GTSAC	2 cut(s)	343, 493
NsiI	ATGCAT	1 cut(s)	199
PctI	GAATGC	2 cut(s)	386, 670
PfeI	GAWTC	2 cut(s)	266, 622
PkrI	GCNGC	4 cut(s)	162, 452, 507, 781
PleI	GAGTC	2 cut(s)	606, 705
PpsI	GAGTC	2 cut(s)	606, 705
Psp6I	CCWGG	2 cut(s)	32, 322
PspGI	CCWGG	2 cut(s)	32, 322
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	165, 187, 297
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	39, 48, 723
SatI	GCNGC	4 cut(s)	161, 451, 506, 780
Sau3AI	GATC	3 cut(s)	26, 616, 718
Sau96I	GGNCC	3 cut(s)	165, 187, 297
SchI	GAGTC	2 cut(s)	607, 706
ScrFI	CCNGG	3 cut(s)	34, 324, 447
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	38, 69, 107, 220, 342
SfaNI	GCATC	4 cut(s)	206, 289, 322, 406
SinI	GGWCC	2 cut(s)	165, 187
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	2 cut(s)	13, 783
SsiI	CCGC	4 cut(s)	123, 144, 163, 384
SspMI	CTAG	2 cut(s)	57, 498
StyD4I	CCNGG	3 cut(s)	32, 322, 445
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	74, 112, 319, 462
TaqI	TCGA	1 cut(s)	572
TasI	AATT	2 cut(s)	13, 783
TfiI	GAWTC	2 cut(s)	266, 622
Tru1I	TTAA	3 cut(s)	39, 48, 723
Tru9I	TTAA	3 cut(s)	39, 48, 723
TscAI	CASTG	3 cut(s)	79, 115, 632
TseFI	GTSAC	2 cut(s)	343, 493
TseI	GCWGC	4 cut(s)	160, 450, 505, 779
Tsp45I	GTSAC	2 cut(s)	343, 493
TspDTI	ATGAA	3 cut(s)	494, 575, 590
TspGWI	ACGGA	2 cut(s)	536, 554
TspRI	CASTG	3 cut(s)	79, 115, 632
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	165, 187
XspI	CTAG	2 cut(s)	57, 498
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.