Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341615.1

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 977

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 976 bp

atgaatctaagtgaggttgatatccgtcttcccatgcttgtttatgtttctcgtgaaaagaggcctggttatgatcataacaagaaagccggagctatgaatgccttggttcgagcctcagccgtcatgtccaacggcgctttcattctcaatcttgactgtgaccactacatctactactcccaagcaatgagagaaggcatgtgcttcatgatggaccgcggtggcgaacgcctctgttatgtccaatttcctcagaggtttgaaggaatagacccttctgatcgctatgccaaccacaacactgttttctttgacgtcaacatgcgtgctcttgatggaattcagggtccagtatatgtgggaacaggatgtctgtttcgtcggactgccttatatggctttgatccacctccaatgaaagaacgtgatggttgctgtagtggtttctttgccaagcgcaagaaaacttcttcagttgcttctgctcctgaagttgactcccaagacggatcagttgaactagacaatgacaatgaagaaatgggtcttgctcttattcctaaaacatttgggaactcaagcctctttgttgactccatccgagttgcagagttccaaggtcggccccttgctgatcatccatccatgaaaaatggacgccccattggtgcccttactcttccccgggaacttcttgatgcatcaacagttgcagaggcaattagttgcatctcatgctggtatgaggacaagactgaatggggccaacgagttgggtggatttatggttcagtgactgaagatgtggtcacaggttacaggatgcacaaccgtggatggaaatctatctactgtgtcactaagaaggatgcctttcgaggaagtgccccaatcaatctcactgaccggcttcaccaggttttgcggtgggctactggctctgttgaaatattcttttctcgtaacaatgctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

6.6

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	671
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	220, 222, 928
AclWI	GGATC	2 cut(s)	401, 520
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	3 cut(s)	459, 513, 822
AcyI	GRCGYC	2 cut(s)	318, 661
AgsI	TTSAA	3 cut(s)	266, 521, 950
AjnI	CCWGG	2 cut(s)	64, 918
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AleI	CACNNNNGTG	1 cut(s)	834
AloI	GAACNNNNNNTCC	2 cut(s)	775, 807
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	401, 520
AlwNI	CAGNNNCTG	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	3 cut(s)	62, 626, 766
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	140, 462
AspS9I	GGNCC	4 cut(s)	217, 350, 627, 766
AsuC2I	CCSGG	2 cut(s)	688, 689
AsuHPI	GGTGA	1 cut(s)	908
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	2 cut(s)	217, 350
BaeGI	GKGCMC	2 cut(s)	676, 892
BanI	GGYRCC	1 cut(s)	671
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	118
BccI	CCATC	6 cut(s)	208, 332, 425, 608, 652, 834
BceAI	ACGGC	2 cut(s)	107, 151
BciT130I	CCWGG	2 cut(s)	66, 920
BclI	TGATCA	2 cut(s)	73, 637
BcnI	CCSGG	2 cut(s)	688, 689
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	141
Bme1390I	CCNGG	4 cut(s)	66, 688, 689, 920
Bme18I	GGWCC	2 cut(s)	217, 350
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	4 cut(s)	217, 350, 627, 766
BmiI	GGNNCC	4 cut(s)	351, 629, 673, 767
BmrFI	CCNGG	4 cut(s)	66, 688, 689, 920
BmsI	GCATC	5 cut(s)	691, 713, 741, 816, 862
BpiI	GAAGAC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	2 cut(s)	688, 689
BsaBI	GATNNNNATC	1 cut(s)	844
BsaHI	GRCGYC	2 cut(s)	318, 661
BsaJI	CCNNGG	6 cut(s)	105, 220, 619, 686, 687, 835
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	353, 943
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	844
BseBI	CCWGG	2 cut(s)	66, 920
BseDI	CCNNGG	6 cut(s)	105, 220, 619, 686, 687, 835
BseGI	GGATG	7 cut(s)	377, 600, 640, 644, 831, 845, 877
BseJI	GATNNNNATC	1 cut(s)	844
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	132, 269
BseNI	ACTGG	2 cut(s)	353, 943
BseSI	GKGCMC	2 cut(s)	676, 892
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	64, 628, 768
BshNI	GGYRCC	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	3 cut(s)	90, 688, 910
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	64, 628, 768
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	3 cut(s)	334, 676, 892
Bsp143I	GATC	5 cut(s)	73, 283, 406, 512, 637
BspACI	CCGC	3 cut(s)	220, 222, 928
BspANI	GGCC	3 cut(s)	64, 628, 768
BspCNI	CTCAG	2 cut(s)	131, 268
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	351, 629, 673, 767
BspPI	GGATC	2 cut(s)	401, 520
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	353, 943
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	6 cut(s)	105, 220, 619, 686, 687, 835
BssMI	GATC	5 cut(s)	73, 283, 406, 512, 637
BssNI	GRCGYC	2 cut(s)	318, 661
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	105, 619
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	66, 920
Bst4CI	ACNGT	5 cut(s)	161, 307, 712, 836, 857
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	2 cut(s)	318, 661
BstAPI	GCANNNNNTGC	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	4 cut(s)	8, 118, 255, 864
BstDSI	CCRYGG	2 cut(s)	220, 835
BstF5I	GGATG	7 cut(s)	377, 600, 640, 644, 831, 845, 877
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 462
BstKTI	GATC	5 cut(s)	76, 286, 409, 515, 640
BstMBI	GATC	5 cut(s)	73, 283, 406, 512, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 738
BstNI	CCWGG	2 cut(s)	66, 920
BstNSI	RCATGY	2 cut(s)	205, 328
BstSCI	CCNGG	4 cut(s)	64, 686, 687, 918
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	2 cut(s)	676, 892
BstUI	CGCG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	776
BsuRI	GGCC	3 cut(s)	64, 628, 768
BtgI	CCRYGG	2 cut(s)	220, 835
BtsCI	GGATG	7 cut(s)	377, 600, 640, 644, 831, 845, 877
BtsIMutI	CAGTG	3 cut(s)	303, 801, 903
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	140, 462
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	4 cut(s)	217, 350, 627, 766
Cfr42I	CCGCGG	1 cut(s)	223
Cfr9I	CCCGGG	1 cut(s)	687
CseI	GACGC	1 cut(s)	669
CsiI	ACCWGGT	1 cut(s)	918
CviAII	CATG	7 cut(s)	34, 127, 202, 211, 325, 649, 738
DdeI	CTNAG	4 cut(s)	8, 118, 255, 864
DpnI	GATC	5 cut(s)	75, 285, 408, 514, 639
DpnII	GATC	5 cut(s)	73, 283, 406, 512, 637
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco130I	CCWWGG	2 cut(s)	105, 619
Eco147I	AGGCCT	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	217, 350
Eco57I	CTGAAG	3 cut(s)	459, 513, 822
Eco88I	CYCGRG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	64, 918
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	105, 619
EcoT22I	ATGCAT	1 cut(s)	706
ErhI	CCWWGG	2 cut(s)	105, 619
FaeI	CATG	7 cut(s)	37, 130, 205, 214, 328, 652, 741
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FatI	CATG	7 cut(s)	33, 126, 201, 210, 324, 648, 737
FbaI	TGATCA	2 cut(s)	73, 637
FokI	GGATG	7 cut(s)	384, 587, 627, 631, 838, 852, 884
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	2 cut(s)	139, 461
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	64, 628, 768
HapII	CCGG	3 cut(s)	90, 688, 910
HgaI	GACGC	1 cut(s)	669
HhaI	GCGC	2 cut(s)	140, 462
Hin1I	GRCGYC	2 cut(s)	318, 661
Hin1II	CATG	7 cut(s)	37, 130, 205, 214, 328, 652, 741
Hin6I	GCGC	2 cut(s)	138, 460
HinP1I	GCGC	2 cut(s)	138, 460
HincII	GTYRAC	3 cut(s)	322, 499, 595
HindII	GTYRAC	3 cut(s)	322, 499, 595
HinfI	GANTC	3 cut(s)	4, 500, 596
HpaII	CCGG	3 cut(s)	90, 688, 910
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	3 cut(s)	322, 499, 595
Hpy188I	TCNGA	4 cut(s)	258, 283, 387, 605
Hpy188III	TCNNGA	6 cut(s)	53, 155, 211, 335, 491, 698
Hpy8I	GTNNAC	3 cut(s)	322, 499, 595
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	4 cut(s)	191, 260, 288, 862
HpyCH4III	ACNGT	5 cut(s)	161, 307, 712, 836, 857
HpyCH4IV	ACGT	2 cut(s)	318, 427
HpyCH4V	TGCA	5 cut(s)	611, 704, 716, 732, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 738
HpyF3I	CTNAG	4 cut(s)	8, 118, 255, 864
HpySE526I	ACGT	2 cut(s)	318, 427
Hsp92I	GRCGYC	2 cut(s)	318, 661
Hsp92II	CATG	7 cut(s)	37, 130, 205, 214, 328, 652, 741
HspAI	GCGC	2 cut(s)	138, 460
Ksp22I	TGATCA	2 cut(s)	73, 637
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	73, 283, 406, 512, 637
LmnI	GCTCC	2 cut(s)	92, 493
LweI	GCATC	5 cut(s)	691, 713, 741, 816, 862
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	318, 427
MaeIII	GTNAC	6 cut(s)	161, 796, 811, 818, 859, 965
MalI	GATC	5 cut(s)	75, 285, 408, 514, 639
MboI	GATC	5 cut(s)	73, 283, 406, 512, 637
MboII	GAAGA	5 cut(s)	20, 465, 551, 674, 815
MhlI	GDGCHC	3 cut(s)	334, 676, 892
MluCI	AATT	3 cut(s)	248, 342, 723
MlyI	GAGTC	2 cut(s)	494, 590
MmeI	TCCRAC	2 cut(s)	156, 365
Mph1103I	ATGCAT	1 cut(s)	706
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	90, 688, 910
MspR9I	CCNGG	4 cut(s)	66, 688, 689, 920
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	66, 920
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	101, 738
NciI	CCSGG	2 cut(s)	688, 689
NdeII	GATC	5 cut(s)	73, 283, 406, 512, 637
NlaIII	CATG	7 cut(s)	37, 130, 205, 214, 328, 652, 741
NlaIV	GGNNCC	4 cut(s)	351, 629, 673, 767
NmuCI	GTSAC	4 cut(s)	161, 796, 811, 859
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	2 cut(s)	205, 328
OliI	CACNNNNGTG	1 cut(s)	834
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	64
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	2 cut(s)	494, 590
PpsI	GAGTC	2 cut(s)	494, 590
Psp6I	CCWGG	2 cut(s)	64, 918
PspGI	CCWGG	2 cut(s)	64, 918
PspN4I	GGNNCC	4 cut(s)	351, 629, 673, 767
PspPI	GGNCC	4 cut(s)	217, 350, 627, 766
PstNI	CAGNNNCTG	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	834
SacII	CCGCGG	1 cut(s)	223
Sau3AI	GATC	5 cut(s)	73, 283, 406, 512, 637
Sau96I	GGNCC	4 cut(s)	217, 350, 627, 766
SchI	GAGTC	2 cut(s)	494, 590
ScrFI	CCNGG	4 cut(s)	66, 688, 689, 920
SduI	GDGCHC	3 cut(s)	334, 676, 892
SetI	ASST	9 cut(s)	18, 97, 263, 321, 415, 430, 625, 820, 924
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	5 cut(s)	691, 713, 741, 816, 862
SfcI	CTRYAG	1 cut(s)	439
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	2 cut(s)	217, 350
SmaI	CCCGGG	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	3 cut(s)	248, 342, 723
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	220, 222, 928
SspI	AATATT	1 cut(s)	954
SspMI	CTAG	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	4 cut(s)	64, 686, 687, 918
StyI	CCWWGG	2 cut(s)	105, 619
TaaI	ACNGT	5 cut(s)	161, 307, 712, 836, 857
TaiI	ACGT	2 cut(s)	321, 430
TaqI	TCGA	2 cut(s)	112, 880
TasI	AATT	3 cut(s)	248, 342, 723
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	3 cut(s)	310, 801, 910
TseFI	GTSAC	4 cut(s)	161, 796, 811, 859
Tsp45I	GTSAC	4 cut(s)	161, 796, 811, 859
TspDTI	ATGAA	7 cut(s)	17, 113, 133, 199, 434, 552, 665
TspGWI	ACGGA	2 cut(s)	14, 525
TspMI	CCCGGG	1 cut(s)	687
TspRI	CASTG	3 cut(s)	310, 801, 910
VpaK11BI	GGWCC	2 cut(s)	217, 350
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	2 cut(s)	205, 328
XmaI	CCCGGG	1 cut(s)	687
XspI	CTAG	1 cut(s)	524
ZraI	GACGTC	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.