Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Forward (+)

26398780 .. 26403312

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3366 bp

ATGGCCTCTAATTACCCAAATGGATCCTCCAGGTTTAACCATCTTAAGAAAACTAGCAATGAACTTGACAGTGACGATATTGGGAGTGTTGAGTTTGCAACCTACACTGTCCAGATACCCGTCACACCGGACAACCAGCCCGCCGGAGTTTCCTTGCAGCGGTCAACTTCTCAGAGAGTTGAGGACCAATATGCATCCAGTTCTTTGTTCACAGGTGGCTACAACTGCGTTACACGAGCCCAGTTGAAGGACAAAGTGATTGAATCCGAAACAAGCCATCCCCAGATGACATGGGCCAAGGGGTCTTATTGTACCGTGCCTGGATGTGATGCTCAGGTGGTGACTGATGAGAGGGGATTGGATATAGTCCCTTGTGAATGCGGTTACAAGATTTGTATGGATTGTTATAGGGATGCTATGAGAAATGGTGAGAGTGTTTGTCCGGGCTGCAAAGCACCGTATAAGGAGATGGATATGAATGAGTATGGTGTGACTAGTCGGCAGCCTTTGCTGTCAACGGATGGGATGTCAAAGACGGACAGGAGGATGTCGCTTATGAAATCAAAATCGATGAAGTCAAAAGCGTTGGTGGAGAGTCAGGCTATTGAAATGGATCAGAATCAGTGGTTGTTTGAGACAAAAGGGAGTTATGGATATGGGAATGCTATGTGGCCAAAGGAAGATGTGAGTGGGAGTCTTGATGGGATGAGTGGTGATCTTAAAATGTTCAAAGATAAGCAATGGAAGCCACTAACGCGTGAAGTGAAAATCTCGGCTGCAATTCTCAGTCCATATCGGCTTCTAGTACTAGCTCGACTGGCGGTCCTTGGATTATTTTTGTATTGGAGAGTCACAAACCCTAATGATGATGCAGTGTGGTTGTGGCTTATGTCTGTGATTTGTGAATTCTGGTTTGCCTTCTCTTGGATACTTGATCAGCTTCCAAAGCTGTGCCCCATAAATCGCATTGCTTATGTTGATGTTTTAAAGGAGAAGTTTGAAACTCCAAATCCAAGCAATCCTACTGGAAAATCTGATCTTCCAGGAATAGACATTTTTGTATCTACAGCAGATCCAGAGAAAGAACCTCCTCTTGTAACTGCAAACACGATTCTCTCGATACTTGCAACTGACTACCCTGTTGAGAAGCTTGCCTGTTATGTTTCTGATGATGGAGGTGCACTTTTGACCTTTGAGGCCATGGCAGAAGCTGCTAGTTTTGCCAACTTGTGGGTACCATTTTGTCGGAAGCATGATATTGAGCCAAGGAACCCAGAATCTTACTTCAGCATGAAGAGAGATCCTTACAAGAATAAAGTAAAGTCCGATTTTGTAAGGGATCGCAGGCAGGTAAAGCGAGAGTATGATGAATTTAAGGTTAGGATTAATGGCCTTCCTGATTCAATCCGGAGACGTTCCGATGCCTTTAATGCTAGAGAGGAGATCAAAGCTATGAAACTTCGGAGAGAGACTAGAGATGATGAACCACTGGAAAATTTAAAGTTCCCAAAAGCAACTTGGATGACTGATGGAACACAATGGCCTGGTACTTGGGTAGTTTCTGCCCCTGAGCATTCCAAGGGTGATCATGCCAGTATCATACAGGTGATGTTAAAACCCCCTAGCGATGAGCCACTTAAAGGAACAGAAGTAGATTCAAATTCCATGAATCTAAGTGAGGTTGATATCCGTCTTCCCATGCTTGTTTATGTTTCTCGTGAAAAGAGGCCTGGTTATGATCATAACAAGAAAGCCGGAGCTATGAATGCCTTGGTTCGAGCCTCAGCCGTCATGTCCAATGGCGCCTTCATTCTCAATCTTGACTGTGACCACTACATCTACTACTCCCAAGCAATGAGAGAAGGCATGTGCTTCATGATGGACCGCGGTGGAGAACGTCTTTGTTATGTCCAATTTCCTCAGCGGTTTGAAGGAATAGACCCTTCTGATCGCTATGCCAACCACAACACTGTTTTCTTTGACGTCAACATGCGTGCTCTTGATGGAATTCAGGGTCCAGTATATGTGGGAACAGGATGTCTCTTTCGTCGGACTGCCTTATATGGCTTTGATCCACCTCCAGTGAAAGAACGTGATGGTTGCTGTAGTGGTTTCTTTGCCAAGCGCAAGAAAACTTCTTCAGTTGCTTCTGCTCCTGAAGTTGACTCCCAAGACGGATCAGTTGAACTAGACAATGACAATGAAGAAATGGGTCTTGCTCTTATTCCTAAAACATTTGGGAACTCGAGCCTCTTTGTTGACTCCATCCGAGTTGCAGAGTTCCAAGGTCGGCCCCTTGCTGATCATCCATCCATGAAAAATGGACGCCCCATTGGTGCCCTTACTCTTCCCCGGGAACTTCTTGATGCATCAACAGTTGCAGAGGCAATTAGTTGCATCTCATGCTGGTATGAGGACAAGACTGAATGGGGCCAACGAGTTGGGTGGATTTATGGTTCAGTGACTGAAGATGTGGTCACAGGTTACAGGATGCACAACCGTGGGTGGAAATCTATCTACTGTGTCACTAAGAAGGATGCCTTTCGAGGAAGTGCCCCAATCAATCTCACTGACCGGCTTCACCAGGTTTTGCGGTGGGCTACTGGCTCTGTTGAAATATTCTTTTCTCGTAACAATGCTCTTCTAGCCAGCTCCAGGATGAAATTTCTCCAAAGGATCGCCTATTTGAATGTCGGAATGTACCCTTTCACATCCATTTTCCTCATTGTTTACTGCTTCCTCCCTGCACTCTCCCTCTTTACTGATCAGTTCATTGTTCAGCAACTAAATGTAACCTTCCTGGTATATCTCTTGGGCATTACAATTACCCTCATTCTTCTTGCCGTGCTTGAGATCAAGTGGTCCGGAATTGAACTTGAGGAGTGGTGGAGGAATGAGCAGTTTTGGTTGATTGGAGGCACAAGTGCCCACCTTGCTGCTGTGCTCCAAGGTCTTCTAAAGGTTATAGCAGGAATTGAGATCTCATTCACTTTGACATCGAAATCGGGAGGCGATGATGCGGATGATGATTTTGTTGATCTTTATATCTTCAAGTGGACATCTCTGATGGTACCACCTATTACTATCATAATGGTTAACTTGATTGGAATAGGTGTTGCTGTTTGTCGAACAATATACAGTGATAACCCAAAGTGGAGCAGCTTGCTTGGAGGTTCTTTTTTCAGCTTCTGGGTGTTGGCTCATCTATACCCCTTCGCCAAAGGACTTATGGGAAGACGAGGGAGGACTCCCACGATTGTATTTGTCTGGTCTGGGCTTCTTGCAATCACCATATCTCTCCTTTGGGTGGCTATTGATCCCCCATCAGGCAGTAGTGGAATTGGAGGTTCATTCCAGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

1121

Amino Acids

125.9

Weight (kDa)

5.97

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	106 - 155	1.4e-17	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	350 - 1109	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1986
Acc36I	ACCTGC	1 cut(s)	1339
Acc65I	GGTACC	2 cut(s)	1234, 3070
AccB1I	GGYRCC	4 cut(s)	1234, 1802, 2336, 3070
AccB7I	CCANNNNNTGG	1 cut(s)	1230
AccII	CGCG	2 cut(s)	757, 1887
AccIII	TCCGGA	2 cut(s)	1407, 2864
AciI	CCGC	9 cut(s)	141, 160, 381, 821, 1885, 1887, 1924, 2593, 3020
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	6 cut(s)	905, 1370, 1495, 1660, 2007, 2663
AcuI	CTGAAG	4 cut(s)	1270, 2124, 2178, 2487
AcyI	GRCGYC	3 cut(s)	1803, 1983, 2326
AfaI	GTAC	6 cut(s)	313, 807, 1236, 1549, 2702, 3072
AfiI	CCNNNNNNNGG	8 cut(s)	159, 247, 924, 1230, 1640, 2655, 3307, 3326
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	755
AhdI	GACNNNNNGTC	1 cut(s)	821
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	8 cut(s)	29, 319, 1042, 1543, 1729, 2583, 2654, 2799
AjuI	GAANNNNNNNTTGG	2 cut(s)	1790, 1822
AleI	CACNNNNGTG	1 cut(s)	2499
AloI	GAACNNNNNNTCC	2 cut(s)	2440, 2472
Alw21I	GWGCWC	3 cut(s)	1183, 1999, 2946
Alw26I	GTCTC	4 cut(s)	629, 1405, 1463, 2045
Alw44I	GTGCAC	1 cut(s)	1179
AlwNI	CAGNNNCTG	3 cut(s)	1211, 2465, 3189
Ama87I	CYCGRG	2 cut(s)	2245, 2352
Aor13HI	TCCGGA	2 cut(s)	1407, 2864
AoxI	GGCC	9 cut(s)	3, 294, 671, 1197, 1390, 1541, 1727, 2291, 2431
ApaLI	GTGCAC	1 cut(s)	1179
ApeKI	GCWGC	7 cut(s)	157, 447, 502, 776, 1211, 2936, 3159
ApoI	RAATTY	6 cut(s)	905, 1370, 1495, 1660, 2007, 2663
AseI	ATTAAT	1 cut(s)	1386
Asp718I	GGTACC	2 cut(s)	1234, 3070
AspLEI	GCGC	2 cut(s)	1805, 2127
AspS9I	GGNCC	8 cut(s)	184, 294, 823, 1882, 2015, 2292, 2431, 2862
AsuC2I	CCSGG	3 cut(s)	444, 2353, 2354
AsuHPI	GGTGA	7 cut(s)	352, 440, 725, 1595, 1618, 2573, 3280
AvaI	CYCGRG	2 cut(s)	2245, 2352
AvaII	GGWCC	5 cut(s)	184, 823, 1882, 2015, 2862
BaeGI	GKGCMC	5 cut(s)	956, 1183, 2341, 2557, 2929
BaeI	ACNNNNGTAYC	2 cut(s)	1539, 1572
BalI	TGGCCA	1 cut(s)	673
BamHI	GGATCC	1 cut(s)	23
BanI	GGYRCC	4 cut(s)	1234, 1802, 2336, 3070
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	2 cut(s)	234, 1716
BbsI	GAAGAC	3 cut(s)	1685, 2945, 3241
Bbv12I	GWGCWC	3 cut(s)	1183, 1999, 2946
BbvCI	CCTCAGC	2 cut(s)	1783, 1920
BbvI	GCAGC	7 cut(s)	169, 434, 514, 763, 1198, 2923, 3171
BceAI	ACGGC	2 cut(s)	1772, 2828
BciT130I	CCWGG	8 cut(s)	31, 321, 1044, 1545, 1731, 2585, 2656, 2801
BciVI	GTATCC	1 cut(s)	921
BclI	TGATCA	5 cut(s)	934, 1585, 1738, 2302, 2764
BcnI	CCSGG	3 cut(s)	444, 2353, 2354
BcoDI	GTCTC	4 cut(s)	629, 1405, 1463, 2045
BcuI	ACTAGT	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	1065, 2104
BfoI	RGCGCY	1 cut(s)	1806
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	1339
BfuI	GTATCC	1 cut(s)	921
BglII	AGATCT	1 cut(s)	2979
BisI	GCNGC	7 cut(s)	158, 448, 503, 777, 1212, 2937, 3160
BlsI	GCNGC	7 cut(s)	159, 449, 504, 778, 1213, 2938, 3161
BmcAI	AGTACT	1 cut(s)	807
Bme18I	GGWCC	5 cut(s)	184, 823, 1882, 2015, 2862
BmeRI	GACNNNNNGTC	1 cut(s)	821
BmeT110I	CYCGRG	2 cut(s)	2245, 2352
BmgT120I	GGNCC	8 cut(s)	184, 294, 823, 1882, 2015, 2292, 2431, 2862
BmiI	GGNNCC	9 cut(s)	25, 1236, 1271, 1804, 2016, 2294, 2338, 2432, 3072
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	3 cut(s)	1685, 2945, 3241
BpmI	CTGGAG	3 cut(s)	13, 2064, 2638
Bpu10I	CCTNAGC	4 cut(s)	333, 1569, 1783, 1920
BpuEI	CTTGAG	2 cut(s)	2870, 2897
BpuMI	CCSGG	3 cut(s)	444, 2353, 2354
Bsa29I	ATCGAT	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	3 cut(s)	1803, 1983, 2326
BsaWI	WCCGGW	3 cut(s)	127, 1407, 2864
Bsc4I	CCNNNNNNNGG	8 cut(s)	159, 247, 924, 1230, 1640, 2655, 3307, 3326
Bse118I	RCCGGY	1 cut(s)	2574
Bse3DI	GCAATG	4 cut(s)	64, 746, 966, 1860
Bse8I	GATNNNNATC	1 cut(s)	618
BseAI	TCCGGA	2 cut(s)	1407, 2864
BseBI	CCWGG	8 cut(s)	31, 321, 1044, 1545, 1731, 2585, 2656, 2801
BseCI	ATCGAT	1 cut(s)	569
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	8 cut(s)	159, 247, 924, 1230, 1640, 2655, 3307, 3326
BseMI	GCAATG	4 cut(s)	64, 746, 966, 1860
BseMII	CTCAG	6 cut(s)	185, 347, 799, 1560, 1797, 1934
BseRI	GAGGAG	3 cut(s)	1080, 1454, 2894
BseSI	GKGCMC	5 cut(s)	956, 1183, 2341, 2557, 2929
BseXI	GCAGC	7 cut(s)	169, 434, 514, 763, 1198, 2923, 3171
BsgI	GTGCAG	1 cut(s)	2730
Bsh1236I	CGCG	2 cut(s)	757, 1887
BshFI	GGCC	9 cut(s)	5, 296, 673, 1199, 1392, 1543, 1729, 2293, 2433
BshNI	GGYRCC	4 cut(s)	1234, 1802, 2336, 3070
BshVI	ATCGAT	1 cut(s)	569
BsiHKAI	GWGCWC	3 cut(s)	1183, 1999, 2946
BsiHKCI	CYCGRG	2 cut(s)	2245, 2352
BsiSI	CCGG	8 cut(s)	128, 144, 443, 1408, 1755, 2353, 2575, 2865
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	8 cut(s)	159, 247, 924, 1230, 1640, 2655, 3307, 3326
BsmAI	GTCTC	4 cut(s)	629, 1405, 1463, 2045
BsmBI	CGTCTC	1 cut(s)	1405
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	4 cut(s)	383, 667, 1573, 1771
BsnI	GGCC	9 cut(s)	5, 296, 673, 1199, 1392, 1543, 1729, 2293, 2433
BsoBI	CYCGRG	2 cut(s)	2245, 2352
Bsp1286I	GDGCHC	8 cut(s)	241, 956, 1183, 1999, 2341, 2557, 2929, 2946
Bsp13I	TCCGGA	2 cut(s)	1407, 2864
Bsp19I	CCATGG	1 cut(s)	1200
BspACI	CCGC	9 cut(s)	141, 160, 381, 821, 1885, 1887, 1924, 2593, 3020
BspANI	GGCC	9 cut(s)	5, 296, 673, 1199, 1392, 1543, 1729, 2293, 2433
BspCNI	CTCAG	6 cut(s)	184, 346, 798, 1561, 1796, 1933
BspDI	ATCGAT	1 cut(s)	569
BspEI	TCCGGA	2 cut(s)	1407, 2864
BspFNI	CGCG	2 cut(s)	757, 1887
BspHI	TCATGA	1 cut(s)	1875
BspLI	GGNNCC	9 cut(s)	25, 1236, 1271, 1804, 2016, 2294, 2338, 2432, 3072
BspMI	ACCTGC	1 cut(s)	1339
BspQI	GCTCTTC	1 cut(s)	2646
BspT107I	GGYRCC	4 cut(s)	1234, 1802, 2336, 3070
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	4 cut(s)	64, 746, 966, 1860
BsrFI	RCCGGY	1 cut(s)	2574
BssAI	RCCGGY	1 cut(s)	2574
BssNI	GRCGYC	3 cut(s)	1803, 1983, 2326
BssSI	CACGAG	2 cut(s)	234, 1716
BssT1I	CCWWGG	8 cut(s)	297, 826, 1200, 1265, 1578, 1770, 2284, 2947
Bst2BI	CACGAG	2 cut(s)	234, 1716
Bst2UI	CCWGG	8 cut(s)	31, 321, 1044, 1545, 1731, 2585, 2656, 2801
Bst6I	CTCTTC	3 cut(s)	1289, 2352, 2646
BstACI	GRCGYC	3 cut(s)	1803, 1983, 2326
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	3 cut(s)	508, 1211, 2403
BstC8I	GCNNGC	6 cut(s)	141, 1152, 1346, 1995, 2650, 3164
BstDEI	CTNAG	8 cut(s)	171, 333, 785, 1569, 1673, 1783, 1920, 2529
BstDSI	CCRYGG	3 cut(s)	1200, 1885, 2500
BstFNI	CGCG	2 cut(s)	757, 1887
BstH2I	RGCGCY	1 cut(s)	1806
BstHHI	GCGC	2 cut(s)	1805, 2127
BstMAI	GTCTC	4 cut(s)	629, 1405, 1463, 2045
BstNI	CCWGG	8 cut(s)	31, 321, 1044, 1545, 1731, 2585, 2656, 2801
BstNSI	RCATGY	2 cut(s)	1870, 1993
BstSFI	CTRYAG	2 cut(s)	1065, 2104
BstSLI	GKGCMC	5 cut(s)	956, 1183, 2341, 2557, 2929
BstUI	CGCG	2 cut(s)	757, 1887
BstV1I	GCAGC	7 cut(s)	169, 434, 514, 763, 1198, 2923, 3171
BstV2I	GAAGAC	3 cut(s)	1685, 2945, 3241
BstX2I	RGATCY	4 cut(s)	23, 1072, 1300, 2979
BstXI	CCANNNNNNTGG	1 cut(s)	2441
BstYI	RGATCY	4 cut(s)	23, 1072, 1300, 2979
Bsu15I	ATCGAT	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	9 cut(s)	5, 296, 673, 1199, 1392, 1543, 1729, 2293, 2433
BsuTUI	ATCGAT	1 cut(s)	569
BtgI	CCRYGG	3 cut(s)	1200, 1885, 2500
BtgZI	GCGATG	2 cut(s)	1641, 3027
BtsI	GCAGTG	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	1339
Cac8I	GCNNGC	6 cut(s)	141, 1152, 1346, 1995, 2650, 3164
CaiI	CAGNNNCTG	3 cut(s)	1211, 2465, 3189
CciI	TCATGA	1 cut(s)	1875
CfoI	GCGC	2 cut(s)	1805, 2127
Cfr10I	RCCGGY	1 cut(s)	2574
Cfr13I	GGNCC	8 cut(s)	184, 294, 823, 1882, 2015, 2292, 2431, 2862
Cfr42I	CCGCGG	1 cut(s)	1888
Cfr9I	CCCGGG	1 cut(s)	2352
ClaI	ATCGAT	1 cut(s)	569
CseI	GACGC	1 cut(s)	2334
CsiI	ACCWGGT	1 cut(s)	2583
Csp6I	GTAC	6 cut(s)	312, 806, 1235, 1548, 2701, 3071
CviQI	GTAC	6 cut(s)	312, 806, 1235, 1548, 2701, 3071
DdeI	CTNAG	8 cut(s)	171, 333, 785, 1569, 1673, 1783, 1920, 2529
DinI	GGCGCC	1 cut(s)	1804
DraI	TTTAAA	2 cut(s)	987, 1500
DriI	GACNNNNNGTC	1 cut(s)	821
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	3 cut(s)	1289, 2352, 2646
Eam1105I	GACNNNNNGTC	1 cut(s)	821
EarI	CTCTTC	3 cut(s)	1289, 2352, 2646
Eco130I	CCWWGG	8 cut(s)	297, 826, 1200, 1265, 1578, 1770, 2284, 2947
Eco147I	AGGCCT	1 cut(s)	1729
Eco24I	GRGCYC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	1687
Eco47I	GGWCC	5 cut(s)	184, 823, 1882, 2015, 2862
Eco57I	CTGAAG	4 cut(s)	1270, 2124, 2178, 2487
Eco88I	CYCGRG	2 cut(s)	2245, 2352
EcoRI	GAATTC	2 cut(s)	905, 2007
EcoRII	CCWGG	8 cut(s)	29, 319, 1042, 1543, 1729, 2583, 2654, 2799
EcoRV	GATATC	1 cut(s)	1687
EcoT14I	CCWWGG	8 cut(s)	297, 826, 1200, 1265, 1578, 1770, 2284, 2947
EcoT22I	ATGCAT	2 cut(s)	196, 2371
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	1804
EheI	GGCGCC	1 cut(s)	1804
ErhI	CCWWGG	8 cut(s)	297, 826, 1200, 1265, 1578, 1770, 2284, 2947
Esp3I	CGTCTC	1 cut(s)	1405
FalI	AAGNNNNNCTT	2 cut(s)	2525, 2557
FaqI	GGGAC	1 cut(s)	353
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	5 cut(s)	934, 1585, 1738, 2302, 2764
Fnu4HI	GCNGC	7 cut(s)	158, 448, 503, 777, 1212, 2937, 3160
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	7 cut(s)	158, 448, 503, 777, 1212, 2937, 3160
GlaI	GCGC	2 cut(s)	1804, 2126
GluI	GCNGC	7 cut(s)	158, 448, 503, 777, 1212, 2937, 3160
GsuI	CTGGAG	3 cut(s)	13, 2064, 2638
HaeII	RGCGCY	1 cut(s)	1806
HaeIII	GGCC	9 cut(s)	5, 296, 673, 1199, 1392, 1543, 1729, 2293, 2433
HapII	CCGG	8 cut(s)	128, 144, 443, 1408, 1755, 2353, 2575, 2865
HgaI	GACGC	1 cut(s)	2334
HhaI	GCGC	2 cut(s)	1805, 2127
Hin1I	GRCGYC	3 cut(s)	1803, 1983, 2326
Hin6I	GCGC	2 cut(s)	1803, 2125
HinP1I	GCGC	2 cut(s)	1803, 2125
HincII	GTYRAC	6 cut(s)	165, 516, 1987, 2164, 2260, 3097
HindII	GTYRAC	6 cut(s)	165, 516, 1987, 2164, 2260, 3097
HindIII	AAGCTT	1 cut(s)	1148
HpaI	GTTAAC	1 cut(s)	3097
HpaII	CCGG	8 cut(s)	128, 144, 443, 1408, 1755, 2353, 2575, 2865
HphI	GGTGA	7 cut(s)	352, 440, 725, 1595, 1618, 2573, 3280
Hpy99I	CGWCG	1 cut(s)	2052
HpyCH4IV	ACGT	4 cut(s)	1414, 1897, 1983, 2092
HpyF3I	CTNAG	8 cut(s)	171, 333, 785, 1569, 1673, 1783, 1920, 2529
HpySE526I	ACGT	4 cut(s)	1414, 1897, 1983, 2092
Hsp92I	GRCGYC	3 cut(s)	1803, 1983, 2326
HspAI	GCGC	2 cut(s)	1803, 2125
KasI	GGCGCC	1 cut(s)	1802
Kpn2I	TCCGGA	2 cut(s)	1407, 2864
KpnI	GGTACC	2 cut(s)	1238, 3074
Ksp22I	TGATCA	5 cut(s)	934, 1585, 1738, 2302, 2764
KspAI	GTTAAC	1 cut(s)	3097
KspI	CCGCGG	1 cut(s)	1888
LguI	GCTCTTC	1 cut(s)	2646
LmnI	GCTCC	5 cut(s)	1757, 2158, 2657, 2949, 3156
Lsp1109I	GCAGC	7 cut(s)	169, 434, 514, 763, 1198, 2923, 3171
MabI	ACCWGGT	1 cut(s)	2583
MaeII	ACGT	4 cut(s)	1414, 1897, 1983, 2092
MflI	RGATCY	4 cut(s)	23, 1072, 1300, 2979
MhlI	GDGCHC	8 cut(s)	241, 956, 1183, 1999, 2341, 2557, 2929, 2946
MlsI	TGGCCA	1 cut(s)	673
MluI	ACGCGT	1 cut(s)	755
MluNI	TGGCCA	1 cut(s)	673
Mly113I	GGCGCC	1 cut(s)	1803
MlyI	GAGTC	6 cut(s)	604, 703, 858, 2159, 2255, 3241
MmeI	TCCRAC	3 cut(s)	1226, 2030, 2674
Mox20I	TGGCCA	1 cut(s)	673
Mph1103I	ATGCAT	2 cut(s)	196, 2371
MroI	TCCGGA	2 cut(s)	1407, 2864
MscI	TGGCCA	1 cut(s)	673
MslI	CAYNNNNRTG	2 cut(s)	1604, 2499
Msp20I	TGGCCA	1 cut(s)	673
MspA1I	CMGCKG	3 cut(s)	160, 1887, 1924
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	8 cut(s)	128, 144, 443, 1408, 1755, 2353, 2575, 2865
Mva1269I	GAATGC	4 cut(s)	383, 667, 1573, 1771
MvaI	CCWGG	8 cut(s)	31, 321, 1044, 1545, 1731, 2585, 2656, 2801
MvnI	CGCG	2 cut(s)	757, 1887
NarI	GGCGCC	1 cut(s)	1803
NciI	CCSGG	3 cut(s)	444, 2353, 2354
NcoI	CCATGG	1 cut(s)	1200
NlaIV	GGNNCC	9 cut(s)	25, 1236, 1271, 1804, 2016, 2294, 2338, 2432, 3072
NmeAIII	GCCGAG	1 cut(s)	752
NmuCI	GTSAC	9 cut(s)	71, 121, 340, 490, 850, 1826, 2461, 2476, 2524
NsiI	ATGCAT	2 cut(s)	196, 2371
NspI	RCATGY	2 cut(s)	1870, 1993
OliI	CACNNNNGTG	1 cut(s)	2499
PaeR7I	CTCGAG	1 cut(s)	2245
PagI	TCATGA	1 cut(s)	1875
PceI	AGGCCT	1 cut(s)	1729
PciSI	GCTCTTC	1 cut(s)	2646
PcsI	WCGNNNNNNNCGW	1 cut(s)	1115
PctI	GAATGC	4 cut(s)	383, 667, 1573, 1771
PfeI	GAWTC	7 cut(s)	263, 619, 1111, 1277, 1400, 1655, 1669
PflMI	CCANNNNNTGG	1 cut(s)	1230
PfoI	TCCNGGA	2 cut(s)	1042, 2654
PkrI	GCNGC	7 cut(s)	159, 449, 504, 778, 1213, 2938, 3161
PleI	GAGTC	6 cut(s)	603, 702, 857, 2159, 2255, 3241
PluTI	GGCGCC	1 cut(s)	1806
PpsI	GAGTC	6 cut(s)	603, 702, 857, 2159, 2255, 3241
PshBI	ATTAAT	1 cut(s)	1386
Psp6I	CCWGG	8 cut(s)	29, 319, 1042, 1543, 1729, 2583, 2654, 2799
PspGI	CCWGG	8 cut(s)	29, 319, 1042, 1543, 1729, 2583, 2654, 2799
PspN4I	GGNNCC	9 cut(s)	25, 1236, 1271, 1804, 2016, 2294, 2338, 2432, 3072
PspPI	GGNCC	8 cut(s)	184, 294, 823, 1882, 2015, 2292, 2431, 2862
PspXI	VCTCGAGB	1 cut(s)	2245
PstNI	CAGNNNCTG	3 cut(s)	1211, 2465, 3189
PsuI	RGATCY	4 cut(s)	23, 1072, 1300, 2979
RsaI	GTAC	6 cut(s)	313, 807, 1236, 1549, 2702, 3072
RsaNI	GTAC	6 cut(s)	312, 806, 1235, 1548, 2701, 3071
RseI	CAYNNNNRTG	2 cut(s)	1604, 2499
SacII	CCGCGG	1 cut(s)	1888
SapI	GCTCTTC	1 cut(s)	2646
SatI	GCNGC	7 cut(s)	158, 448, 503, 777, 1212, 2937, 3160
Sau96I	GGNCC	8 cut(s)	184, 294, 823, 1882, 2015, 2292, 2431, 2862
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	6 cut(s)	604, 703, 858, 2159, 2255, 3241
SduI	GDGCHC	8 cut(s)	241, 956, 1183, 1999, 2341, 2557, 2929, 2946
SexAI	ACCWGGT	1 cut(s)	2583
SfcI	CTRYAG	2 cut(s)	1065, 2104
SfoI	GGCGCC	1 cut(s)	1804
Sfr274I	CTCGAG	1 cut(s)	2245
Sfr303I	CCGCGG	1 cut(s)	1888
SgrBI	CCGCGG	1 cut(s)	1888
SinI	GGWCC	5 cut(s)	184, 823, 1882, 2015, 2862
SlaI	CTCGAG	1 cut(s)	2245
SmaI	CCCGGG	1 cut(s)	2354
SmiMI	CAYNNNNRTG	2 cut(s)	1604, 2499
SmlI	CTYRAG	4 cut(s)	44, 2245, 2849, 2876
SmoI	CTYRAG	4 cut(s)	44, 2245, 2849, 2876
SpeI	ACTAGT	1 cut(s)	494
SseBI	AGGCCT	1 cut(s)	1729
SsiI	CCGC	9 cut(s)	141, 160, 381, 821, 1885, 1887, 1924, 2593, 3020
SspDI	GGCGCC	1 cut(s)	1802
SspI	AATATT	1 cut(s)	2619
StuI	AGGCCT	1 cut(s)	1729
StyI	CCWWGG	8 cut(s)	297, 826, 1200, 1265, 1578, 1770, 2284, 2947
TaiI	ACGT	4 cut(s)	1417, 1900, 1986, 2095
TaqI	TCGA	8 cut(s)	569, 814, 1118, 1777, 2246, 2545, 2999, 3127
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	7 cut(s)	263, 619, 1111, 1277, 1400, 1655, 1669
TseFI	GTSAC	9 cut(s)	71, 121, 340, 490, 850, 1826, 2461, 2476, 2524
TseI	GCWGC	7 cut(s)	157, 447, 502, 776, 1211, 2936, 3159
Tsp45I	GTSAC	9 cut(s)	71, 121, 340, 490, 850, 1826, 2461, 2476, 2524
TspGWI	ACGGA	4 cut(s)	533, 551, 1679, 2190
TspMI	CCCGGG	1 cut(s)	2352
Van91I	CCANNNNNTGG	1 cut(s)	1230
Vha464I	CTTAAG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	1179
VpaK11BI	GGWCC	5 cut(s)	184, 823, 1882, 2015, 2862
VspI	ATTAAT	1 cut(s)	1386
XapI	RAATTY	6 cut(s)	905, 1370, 1495, 1660, 2007, 2663
XceI	RCATGY	2 cut(s)	1870, 1993
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1515, 3226
XhoI	CTCGAG	1 cut(s)	2245
XmaI	CCCGGG	1 cut(s)	2352
ZraI	GACGTC	1 cut(s)	1984
ZrmI	AGTACT	1 cut(s)	807
Zsp2I	ATGCAT	2 cut(s)	196, 2371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.