Rorug07G0130100

Belongs to the glycosyltransferase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001776
Physical Location & Seq
Forward (+)
10295023 .. 10295289
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0130100.1

Sequence Viewer

Length: 267 bp
ATGCAGATAATTTCCGGGCTAGGGTTTTGTCCCGTCAGCCGTGTCTATAAAGTACTGTGCACCTTTCCAATAAAAGGTTCTAGTGATGAAGAGGAGGAAATGGAGGCAATGGTTTTGACAGTTAGCTGCGGAAGTTGGAGAAGCATTGGGCATTATAAAGGCACGGCTGCTGGGAAAACACAAAAGCGTATGATTTATCTGAATGGATCCCTTCACTGGATAAATGATTATGGAAACAGGCCGGACTATTTCGATATGTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulose_synt zf-RING_4

Protein Analysis

88

Amino Acids

9.93

Weight (kDa)

6.7

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 3 - 83 5.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AciI CCGC 1 cut(s) 129
AclWI GGATC 2 cut(s) 201, 214
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 3 cut(s) 21, 74, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
Alw21I GWGCWC 1 cut(s) 62
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 2 cut(s) 201, 214
AoxI GGCC 1 cut(s) 239
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 126, 167
AsuC2I CCSGG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 62
BamHI GGATCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 113, 154
BceAI ACGGC 2 cut(s) 24, 180
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 2 cut(s) 20, 81
BisI GCNGC 2 cut(s) 127, 168
BlsI GCNGC 2 cut(s) 128, 169
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 74, 216
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 21, 74, 216
BseMI GCAATG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 113, 154
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 15, 242
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 3 cut(s) 21, 74, 216
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 201, 214
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 221
BssMI GATC 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 57, 121
Bst6I CTCTTC 1 cut(s) 84
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 113, 154
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 214
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 5 cut(s) 19, 39, 126, 167, 241
CviKI_1 RGCY 5 cut(s) 19, 39, 126, 167, 241
CviQI GTAC 1 cut(s) 53
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
FaiI YATR 5 cut(s) 48, 156, 191, 231, 257
FaqI GGGAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 127, 168
Fsp4HI GCNGC 2 cut(s) 127, 168
FspBI CTAG 2 cut(s) 20, 81
GluI GCNGC 2 cut(s) 127, 168
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 241
HapII CCGG 2 cut(s) 15, 242
HpaII CCGG 2 cut(s) 15, 242
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 57, 121
HpyCH4V TGCA 2 cut(s) 4, 60
Kzo9I GATC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 28, 156, 202, 223, 255
Lsp1109I GCAGC 2 cut(s) 113, 154
MaeI CTAG 2 cut(s) 20, 81
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 3 cut(s) 85, 88, 97
MspI CCGG 2 cut(s) 15, 242
MspR9I CCNGG 1 cut(s) 16
NciI CCSGG 1 cut(s) 16
NdeII GATC 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 128, 169
PsiI TTATAA 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 2 cut(s) 127, 168
Sau3AI GATC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 62
SetI ASST 3 cut(s) 65, 79, 128
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 20, 81
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 57, 121
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 52
TscAI CASTG 1 cut(s) 221
TseI GCWGC 2 cut(s) 126, 167
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 58
XspI CTAG 2 cut(s) 20, 81
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.