Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314167.1

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Reverse (-)

305 .. 871

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctggtatatctcttgggcattacaattaccctcattcttcttgccgtgcttgagatcaagtggtccggaattgaacttgaggagtggtggaggaatgagcagttttggttgattggaggcacaagtgcccaccttgctgctgtgctccaaggtcttctaaaggttatagcaggaattgagatctcattcactttgacatcgaaatcgggaggcgatgatgcggatgatgattttgttgatctttatatcttcaagtggacatctctgatggtaccacctattactatcataatggttaacttgattggaataggtgttgctgtttgtcgaacaatatacagtgataacccaaagtggagcagcttgcttggaggttcttttttcagcttctgggtgttggctcatctataccccttcgccaaaggacttatgggaagacgagggaggactcccacgattgtatttgtctggtctgggcttcttgcaatcaccatatctctcctttgggtggctattgatcccccatcaggcagtagtggaattggaggttcattccagtttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

188

Amino Acids

20.61

Weight (kDa)

5.25

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	508, 527
AgsI	TTSAA	2 cut(s)	74, 253
AluBI	AGCT	2 cut(s)	363, 387
AluI	AGCT	2 cut(s)	363, 387
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	390
Aor13HI	TCCGGA	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	137, 360
Asp718I	GGTACC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	146, 442
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	124, 372
BccI	CCATC	2 cut(s)	262, 532
BceAI	ACGGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	138, 361
BlsI	GCNGC	2 cut(s)	139, 362
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	146, 442
BpuEI	CTTGAG	2 cut(s)	71, 98
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 527
Bse1I	ACTGG	1 cut(s)	556
BseAI	TCCGGA	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	508, 527
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	124, 372
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	508, 527
Bsp1286I	GDGCHC	2 cut(s)	130, 147
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	54, 180, 238, 517
BspACI	CCGC	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	54, 180, 238, 517
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	57, 183, 241, 520
BstMBI	GATC	4 cut(s)	54, 180, 238, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	124, 372
BstV2I	GAAGAC	2 cut(s)	146, 442
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	272
CviJI	RGCY	5 cut(s)	363, 387, 401, 478, 512
CviKI_1	RGCY	5 cut(s)	363, 387, 401, 478, 512
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	4 cut(s)	56, 182, 240, 519
DpnII	GATC	4 cut(s)	54, 180, 238, 517
Eco130I	CCWWGG	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaiI	YATR	8 cut(s)	7, 167, 246, 290, 337, 409, 431, 494
Fnu4HI	GCNGC	2 cut(s)	138, 361
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	138, 361
GluI	GCNGC	2 cut(s)	138, 361
HapII	CCGG	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	448
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	258, 298
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	2 cut(s)	66, 207
Hpy8I	GTNNAC	2 cut(s)	258, 298
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	275
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	54, 180, 238, 517
LmnI	GCTCC	2 cut(s)	150, 357
LpnPI	CCDG	6 cut(s)	79, 156, 376, 454, 459, 513
Lsp1109I	GCAGC	2 cut(s)	124, 372
LweI	GCATC	1 cut(s)	208
MalI	GATC	4 cut(s)	56, 182, 240, 519
MboI	GATC	4 cut(s)	54, 180, 238, 517
MboII	GAAGA	4 cut(s)	29, 146, 241, 447
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	130, 147
MluCI	AATT	4 cut(s)	24, 69, 174, 540
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	9 cut(s)	41, 73, 84, 110, 203, 365, 434, 438, 539
MroI	TCCGGA	1 cut(s)	65
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	54, 180, 238, 517
NlaIV	GGNNCC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	139, 362
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	138, 361
Sau3AI	GATC	4 cut(s)	54, 180, 238, 517
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	130, 147
SetI	ASST	9 cut(s)	135, 154, 165, 280, 316, 365, 376, 389, 550
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	50, 77
SmoI	CTYRAG	2 cut(s)	50, 77
Sse9I	AATT	4 cut(s)	24, 69, 174, 540
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	200, 328
TasI	AATT	4 cut(s)	24, 69, 174, 540
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	2 cut(s)	137, 360
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.