Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366393.1

Orthogroup ID

OG0001776

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1103

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 643 bp

aatctccaatcaatacatcaatcgggtcccctaggcttcgccgtgttagccaaacaagccatgatctaaacagtgacattgggggtgtcgaattcgcaacctacacagtccacataccctccacacctgacaacaaccccatgtcagcttccatggagtactccacttctcagagagtggaggaccaattcgtctccagctctctcttcaccggcggttacaattgcgtcacgcaagcccagctgaaggaaaaggtcattgaatcacagaccagctaccatccccagatgactggggcaaaggggtctttctgcgccgtgccgggttgtgatgctaaggtggtgactgatgagaggggactggatattctcccttgtgaatgtgactacaagatttgtatggattgttttagggatgctgtgagaaatggtgaccacatgtgtcctggctgcaaggagccttataaggagttggatgtgaccgagtatgctgtgcataatcgaaagcagtatcagcagcagatgtcgaaaacagagaggaggatgtcgttgatgaagtcgacgaaggtgatggggcgccagagtagcgagtttgatcacaacaagtggttgtttgagacaaaggggagttatggatatggaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

213

Amino Acids

23.92

Weight (kDa)

6.3

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02730 AT1G32180 AT1G32180
fragaria_vesca	FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23130 FvH4_5g23160 FvH4_5g23160
prunus_persica	Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027500_v2.0.a1 Prupe.5G027700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0212001 RchiOBHm_Chr7g0212061
rosa_laevigata	RLG00000002942 RLG00000002946
rosa_multiflora	Rmu_co8225350.1_g000001 Rmu_co8305165.1_g000001 Rmu_co8314167.1_g000001 Rmu_co8341615.1_g000001 Rmu_co8366393.1_g000001 Rmu_co8499369.1_g000001 Rmu_sc0002283.1_g000005 Rmu_sc0002283.1_g000014 Rmu_sc0014812.1_g000004 Rmu_sc0014812.1_g000013
rosa_roxburghii	Rroxscaffold_3G00247170 Rroxscaffold_3G00247200
rosa_rugosa	Rorug07G0130000.1 Rorug07G0130100 Rorug07G0130200.1 Rorug07G0130300
rosa_samantha	Rh7AG262900 Rh7AG263400 Rh7BG257000 Rh7BG257200 Rh7CG279500 Rh7CG279900 Rh7DG269700 Rh7DG270200
rosa_wichuraiana	Rw7G022430 Rw7G022460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AasI	GACNNNNNNGTC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	559
AciI	CCGC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	148, 200, 243, 275
AluI	AGCT	4 cut(s)	148, 200, 243, 275
Alw26I	GTCTC	2 cut(s)	198, 610
ApeKI	GCWGC	2 cut(s)	449, 516
ApoI	RAATTY	1 cut(s)	91
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	316, 578
AspS9I	GGNCC	2 cut(s)	26, 183
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	201, 354, 442, 579
AvaII	GGWCC	2 cut(s)	26, 183
AvrII	CCTAGG	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	436, 528
BccI	CCATC	2 cut(s)	287, 564
BceAI	ACGGC	2 cut(s)	26, 301
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	198, 610
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	579
BisI	GCNGC	2 cut(s)	450, 517
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	2 cut(s)	451, 518
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	323, 446
Bme18I	GGWCC	2 cut(s)	26, 183
BmgT120I	GGNCC	2 cut(s)	26, 183
BmiI	GGNNCC	4 cut(s)	27, 28, 458, 577
BmrFI	CCNGG	2 cut(s)	323, 446
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	321, 405
BmuI	ACTGGG	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	31, 152
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	297, 365
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	31, 152
BseGI	GGATG	4 cut(s)	279, 420, 480, 548
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	2 cut(s)	297, 365
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	436, 528
BseYI	CCCAGC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	212, 322
BslFI	GGGAC	2 cut(s)	12, 371
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	198, 610
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	12, 371
Bsp143I	GATC	2 cut(s)	63, 594
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	27, 28, 458, 577
BspT107I	GGYRCC	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	297, 365
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	31, 152
BssMI	GATC	2 cut(s)	63, 594
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	31, 152
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	73, 108
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	170, 335
BstDSI	CCRYGG	1 cut(s)	152
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	4 cut(s)	279, 420, 480, 548
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	2 cut(s)	316, 578
BstKTI	GATC	2 cut(s)	66, 597
BstMAI	GTCTC	2 cut(s)	198, 610
BstMBI	GATC	2 cut(s)	63, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 240, 513, 584
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	441
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	321, 444
BstV1I	GCAGC	2 cut(s)	436, 528
BstXI	CCANNNNNNTGG	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	279, 420, 480, 548
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	2 cut(s)	316, 578
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	26, 183
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	61, 141, 153, 438
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	170, 335
DinI	GGCGCC	1 cut(s)	577
DpnI	GATC	2 cut(s)	65, 596
DpnII	GATC	2 cut(s)	63, 594
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	31, 152
Eco47I	GGWCC	2 cut(s)	26, 183
Eco57I	CTGAAG	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	31, 152
EgeI	GGCGCC	1 cut(s)	577
EheI	GGCGCC	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	31, 152
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	64, 144, 156, 441
FaqI	GGGAC	2 cut(s)	12, 371
FatI	CATG	4 cut(s)	60, 140, 152, 437
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	450, 517
FokI	GGATG	4 cut(s)	266, 427, 487, 555
Fsp4HI	GCNGC	2 cut(s)	450, 517
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	315, 577
GluI	GCNGC	2 cut(s)	450, 517
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	579
HapII	CCGG	2 cut(s)	212, 322
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	316, 578
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	4 cut(s)	64, 144, 156, 441
Hin6I	GCGC	2 cut(s)	314, 576
HinP1I	GCGC	2 cut(s)	314, 576
HincII	GTYRAC	1 cut(s)	560
HindII	GTYRAC	1 cut(s)	560
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	212, 322
HphI	GGTGA	4 cut(s)	201, 354, 442, 579
Hpy166II	GTNNAC	2 cut(s)	111, 560
Hpy188I	TCNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	111, 560
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	240, 558
HpyCH4III	ACNGT	2 cut(s)	73, 108
HpyCH4V	TGCA	2 cut(s)	452, 495
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 240, 513, 584
HpyF3I	CTNAG	2 cut(s)	170, 335
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	64, 144, 156, 441
HspAI	GCGC	2 cut(s)	314, 576
KasI	GGCGCC	1 cut(s)	575
KflI	GGGWCCC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	2 cut(s)	63, 594
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	2 cut(s)	436, 528
LweI	GCATC	2 cut(s)	321, 405
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	7 cut(s)	73, 217, 228, 342, 382, 430, 477
MalI	GATC	2 cut(s)	65, 596
MboI	GATC	2 cut(s)	63, 594
MboII	GAAGA	1 cut(s)	198
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	3 cut(s)	91, 187, 222
Mly113I	GGCGCC	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	5 cut(s)	129, 174, 347, 530, 533
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	212, 322
MspR9I	CCNGG	2 cut(s)	323, 446
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 240, 513, 584
NarI	GGCGCC	1 cut(s)	576
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	63, 594
NlaIII	CATG	4 cut(s)	64, 144, 156, 441
NlaIV	GGNNCC	4 cut(s)	27, 28, 458, 577
NmuCI	GTSAC	6 cut(s)	73, 228, 342, 382, 430, 477
NspI	RCATGY	1 cut(s)	441
PciI	ACATGT	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	451, 518
PluTI	GGCGCC	1 cut(s)	579
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	4 cut(s)	27, 28, 458, 577
PspPI	GGNCC	2 cut(s)	26, 183
PspPPI	RGGWCCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	558
SatI	GCNGC	2 cut(s)	450, 517
Sau3AI	GATC	2 cut(s)	63, 594
Sau96I	GGNCC	2 cut(s)	26, 183
ScaI	AGTACT	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	323, 446
SetI	ASST	9 cut(s)	103, 129, 150, 202, 245, 257, 277, 341, 569
SfaNI	GCATC	2 cut(s)	321, 405
SfoI	GGCGCC	1 cut(s)	577
SgrAI	CRCCGGYG	1 cut(s)	211
SinI	GGWCC	2 cut(s)	26, 183
Sse9I	AATT	3 cut(s)	91, 187, 222
SsiI	CCGC	1 cut(s)	215
SspDI	GGCGCC	1 cut(s)	575
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	321, 444
StyI	CCWWGG	2 cut(s)	31, 152
TaaI	ACNGT	2 cut(s)	73, 108
TaqI	TCGA	4 cut(s)	89, 501, 526, 559
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	3 cut(s)	91, 187, 222
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	6 cut(s)	73, 228, 342, 382, 430, 477
TseI	GCWGC	2 cut(s)	449, 516
Tsp45I	GTSAC	6 cut(s)	73, 228, 342, 382, 430, 477
TspDTI	ATGAA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	26, 183
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmaJI	CCTAGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.