Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294453.1

Orthogroup ID

OG0009143

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 563

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

atggcgtcgacgccgtcctcctccgccaccacgaacgtcatgctcgccatcttcgagaagaagaccaccccaatcgatctctaccgcccactccgcaactacatcgccttcaattactccgagcgcgaggcccagaacctcgaagacgacctccaaaccctaaagcagctccgctccgacttggagcgccaacccgacccgtccctccccgcccgccgcgacctcctccaaaattacttcaaagccctctgcctcgtcgagacccgcttcccaatctcgccggacaaggaccacatcaacaccgtcaccttcgtctggcacgacgccttcaagaacaagcagaaggcctcccagcagaacatccacctcgagaaggccgccgttctcttcaatttgggcgccgtctacagccagattgggctttcctacgatcgcgccaccgtcgacggccgccgccaggcctcccacgccttcatcgcctccgccggcgcgtttgcgtttctgcgggacaatgcggcgaccaaggcctcgattgggagctccacgacggtggatttgtcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005829 GO:0005911 GO:0006996 GO:0007032 GO:0007033 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016050 GO:0022603 GO:0030054 GO:0031156 GO:0031285 GO:0031286 GO:0031410 GO:0031982 GO:0032101 GO:0032102 GO:0032104 GO:0032105 GO:0032107 GO:0032108 GO:0032182 GO:0032501 GO:0032502 GO:0036257 GO:0042173 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043621 GO:0043900 GO:0043901 GO:0043937 GO:0043938 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045881 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051241 GO:0055044 GO:0065007 GO:0071840 GO:0075260 GO:0075262 GO:0097708 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ALIX_LYPXL_bnd BRO1

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

8.67

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15130
fragaria_vesca	FvH4_4g26260 FvH4_4g26260
malus_domestica	MD13G1031100.v1.1 MD16G1033300.v1.1
prunus_persica	Prupe.1G321000_v2.0.a1 Prupe.1G321000_v2.0.a1
pyrus_communis	pycom13g02720 pycom16g02790
rosa_chinensis	RchiOBHm_Chr4g0433861
rosa_laevigata	RLG00000006722
rosa_multiflora	Rmu_co8294453.1_g000001 Rmu_sc0000352.1_g000001 Rmu_ssc0000164.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375260
rosa_rugosa	Rorug04G0271800 Rorug04G0271900
rosa_samantha	Rh4AG326600 Rh4BG334000 Rh4CG349700 Rh4DG330800
rosa_wichuraiana	Rw4G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	3 cut(s)	8, 405, 444
AccII	CGCG	4 cut(s)	126, 219, 435, 491
AcoI	YGGCCR	1 cut(s)	448
AcyI	GRCGYC	4 cut(s)	5, 11, 324, 399
AfiI	CCNNNNNNNGG	4 cut(s)	315, 373, 457, 534
AgsI	TTSAA	4 cut(s)	112, 241, 331, 391
AjnI	CCWGG	1 cut(s)	456
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	2 cut(s)	169, 540
AluI	AGCT	2 cut(s)	169, 540
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	6 cut(s)	129, 345, 375, 448, 459, 525
ApeKI	GCWGC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	1 cut(s)	538
AspLEI	GCGC	5 cut(s)	126, 189, 401, 437, 491
AspS9I	GGNCC	2 cut(s)	130, 289
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	68, 150
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	3 cut(s)	365, 386, 463
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 85, 119
BciT130I	CCWGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	2 cut(s)	190, 402
BisI	GCNGC	6 cut(s)	167, 217, 378, 451, 454, 516
BlsI	GCNGC	6 cut(s)	168, 218, 379, 452, 455, 517
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	130, 289
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	458
BpiI	GAAGAC	2 cut(s)	68, 150
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	4 cut(s)	5, 11, 324, 399
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 373, 457, 534
Bse118I	RCCGGY	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	458
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	315, 373, 457, 534
BseRI	GAGGAG	2 cut(s)	10, 215
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	4 cut(s)	126, 219, 435, 491
Bsh1285I	CGRYCG	2 cut(s)	433, 451
BshFI	GGCC	6 cut(s)	131, 347, 377, 450, 461, 527
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	433, 451
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	281, 486
BslFI	GGGAC	2 cut(s)	187, 521
BslI	CCNNNNNNNGG	4 cut(s)	315, 373, 457, 534
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	187, 521
BsnI	GGCC	6 cut(s)	131, 347, 377, 450, 461, 527
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	2 cut(s)	76, 430
BspANI	GGCC	6 cut(s)	131, 347, 377, 450, 461, 527
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	4 cut(s)	126, 219, 435, 491
BspLI	GGNNCC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	76, 430
BssNI	GRCGYC	4 cut(s)	5, 11, 324, 399
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	304, 442, 550
Bst6I	CTCTTC	1 cut(s)	392
BstACI	GRCGYC	4 cut(s)	5, 11, 324, 399
BstC8I	GCNNGC	3 cut(s)	45, 214, 487
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	4 cut(s)	126, 219, 435, 491
BstH2I	RGCGCY	2 cut(s)	190, 402
BstHHI	GCGC	5 cut(s)	126, 189, 401, 437, 491
BstKTI	GATC	2 cut(s)	79, 433
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	76, 430
BstMCI	CGRYCG	2 cut(s)	433, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 467, 476, 524
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	4 cut(s)	126, 219, 435, 491
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	2 cut(s)	68, 150
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstZI	CGGCCG	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	6 cut(s)	131, 347, 377, 450, 461, 527
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	2 cut(s)	88, 460
BtsCI	GGATG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	45, 214, 487
CfoI	GCGC	5 cut(s)	126, 189, 401, 437, 491
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	130, 289
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	19, 332
CviAII	CATG	1 cut(s)	40
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	2 cut(s)	78, 432
DpnII	GATC	2 cut(s)	76, 430
EaeI	YGGCCR	1 cut(s)	448
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	2 cut(s)	13, 472
Ecl136II	GAGCTC	1 cut(s)	540
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	3 cut(s)	347, 461, 527
Eco24I	GRGCYC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	542
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	2 cut(s)	187, 521
FatI	CATG	1 cut(s)	39
FauI	CCCGC	4 cut(s)	217, 221, 272, 498
FblI	GTMKAC	3 cut(s)	8, 405, 444
Fnu4HI	GCNGC	6 cut(s)	167, 217, 378, 451, 454, 516
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	6 cut(s)	167, 217, 378, 451, 454, 516
GlaI	GCGC	5 cut(s)	125, 188, 400, 436, 490
GluI	GCNGC	6 cut(s)	167, 217, 378, 451, 454, 516
GsaI	CCCAGC	1 cut(s)	355
HaeII	RGCGCY	2 cut(s)	190, 402
HaeIII	GGCC	6 cut(s)	131, 347, 377, 450, 461, 527
HapII	CCGG	2 cut(s)	281, 486
HgaI	GACGC	2 cut(s)	19, 332
HhaI	GCGC	5 cut(s)	126, 189, 401, 437, 491
Hin1I	GRCGYC	4 cut(s)	5, 11, 324, 399
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	5 cut(s)	124, 187, 399, 435, 489
HinP1I	GCGC	5 cut(s)	124, 187, 399, 435, 489
HincII	GTYRAC	2 cut(s)	9, 445
HindII	GTYRAC	2 cut(s)	9, 445
HpaII	CCGG	2 cut(s)	281, 486
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	3 cut(s)	9, 406, 445
Hpy188I	TCNGA	2 cut(s)	121, 178
Hpy188III	TCNNGA	4 cut(s)	55, 259, 331, 370
Hpy8I	GTNNAC	3 cut(s)	9, 406, 445
Hpy99I	CGWCG	7 cut(s)	10, 13, 260, 326, 446, 449, 550
HpyAV	CCTTC	6 cut(s)	118, 319, 337, 337, 367, 481
HpyCH4III	ACNGT	3 cut(s)	304, 442, 550
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 467, 476, 524
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	4 cut(s)	5, 11, 324, 399
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	5 cut(s)	124, 187, 399, 435, 489
KasI	GGCGCC	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	485
KroNI	GCCGGC	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	76, 430
LmnI	GCTCC	5 cut(s)	174, 179, 184, 537, 545
LpnPI	CCDG	8 cut(s)	146, 294, 301, 365, 425, 443, 470, 499
Lsp1109I	GCAGC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	78, 432
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	76, 430
MboII	GAAGA	5 cut(s)	43, 70, 73, 155, 379
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	3 cut(s)	112, 232, 391
Mly113I	GGCGCC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	201
MreI	CGCCGGCG	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	2 cut(s)	281, 486
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	4 cut(s)	126, 219, 435, 491
MwoI	GCNNNNNNNGC	4 cut(s)	93, 467, 476, 524
NaeI	GCCGGC	1 cut(s)	487
NarI	GGCGCC	1 cut(s)	399
NdeII	GATC	2 cut(s)	76, 430
NgoMIV	GCCGGC	1 cut(s)	485
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	368
PceI	AGGCCT	3 cut(s)	347, 461, 527
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 318
PdiI	GCCGGC	1 cut(s)	487
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	6 cut(s)	168, 218, 379, 452, 455, 517
Ple19I	CGATCG	1 cut(s)	433
PluTI	GGCGCC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	130, 289
PsyI	GACNNNGTC	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	542
SalI	GTCGAC	2 cut(s)	7, 443
SatI	GCNGC	6 cut(s)	167, 217, 378, 451, 454, 516
Sau3AI	GATC	2 cut(s)	76, 430
Sau96I	GGNCC	2 cut(s)	130, 289
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	8 cut(s)	39, 141, 153, 171, 225, 311, 369, 542
SfcI	CTRYAG	1 cut(s)	406
SfoI	GGCGCC	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	485
SgrDI	CGTCGACG	2 cut(s)	7, 443
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	112, 232, 391
SseBI	AGGCCT	3 cut(s)	347, 461, 527
SspDI	GGCGCC	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	542
StuI	AGGCCT	3 cut(s)	347, 461, 527
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	304, 442, 550
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	8 cut(s)	8, 54, 75, 141, 258, 369, 444, 530
TasI	AATT	3 cut(s)	112, 232, 391
TauI	GCSGC	5 cut(s)	219, 380, 453, 456, 518
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	463
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	3 cut(s)	8, 405, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.