Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009143

Physical Location & Seq

Genomic Coordinates Reverse (-)

49834464 .. 49840849

Gene Structure 6386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG334000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGCGTCGACGCCGTCCTCCTCCGCCACCACCAACGTCATGCTCGCCATCTTCGAGAAGAAGACCACCCCAATCGATCTCTACCGCCCACTCCGCAACTACATCGCCTTCAATTACTCCGAGCGCGAGGCCCAGAACCTCGAAGACGACCTCCAAACCCTAAAGCAGCTCCGCTCCGACTTGGAGCGCCAACCCGACCCGTCCCTCCCTGCCCGCCGCGACCTCCTCCAAAATTACTTCAAAGCCCTCTGCCTCGTCGAGACCCGCTTCCCAATCTCGCCGGACAAGGACCACATCAACACCGTCACCTTCGTCTGGCACGACGCCTTCAAGAACAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCGCCGTTCTCTTCAATTTGGGCGCCGTCTACAGCCAGATTGGGCTTTCCTACGATCGCGCCACCGTCGACGGCCGCCGCCAGGCCTCCCACGCCTTCATCGCCTCCGCCGGCGCGTTTGCGTTTCTGCGGGACAATGCGGCGACCAAGGCCTCGATTGGGAGCTCCACGACGGTGGATTTGTCGGTGGAGTGCGCCGGGATGCTGGAGAGGCTGATGCTGGCTCAGGCGCAGGAGAGCGTCTTTGAGAATTCCATAGCCAAAGGCAGCACACCTGGTGTTTGTGCCAAGATCTCCAGGCAGGTTGGACTGTACTACGAGGAAGCTTTAGCTGCAACAAATTCTCCCACTTTGAACCAGCATTTTGACAGGGCTTGGATATCACACATGCAGTTAAAGGCCGCACTCTTTTTTGCAGAAGCTTGCTATAGGTATGGTCTAGAACTGCATGAGAAAGAAGAGATTGCTGAAGAAATTGCACGGTTAAAGAGTGGGATAAGTGCTCTAGCGGAGTCTAAGAAATCCACAAAGGGGGCAGCTGCACAAATTTTGGATGCAATTAGCAAGTTAGAGGCCAACCTTAACCGTAACCTTGAGAGGGCTATGAAGGAGAATGATAGAGTTTACCTCATGAGGGTTCCTTCTCTTAGTTCCTTACCACCCCTTCCAGCATTTTCCATGGTGAAGCCTATGGCAATGAGCGAGGTCTTGGATGCAAGCAAGGAGAAGATGTTTGCTAGTCTTGTTCCGGACAGTAGTGCAAAAGCTCTTTCCAGGTACACTGAAATGGTCGATGATATTATCAGGACGCAAGCTGAAAAATTGCAACAAGCCAGTGAGCTGACCAGAGTTAGGCTCAAGGAAATGGACCTTCCAGAGTCTATTCTTGCTTTGGAAGGAAATTTTACTCTTCCTACGGATCTCAAAGAAGATGTGGAGGCAGTGCAAATTAGTGGGGGCCCTGCAGGTCTGGAAGCTGAGTTGCAGCAACTTAGAGATTTGAGAAGGGTGAACCAGGAAATTCTGGTACATATTGATGAGCTCTTGCAGAAAGAGGCAAGAGAAGATGCCCAGTTTAGAAGCCAATTTGGAACACGTTGGACGAGGCCTCAGTCAAGCACTCTGACTAAGAACTTACAGGATAGGCTAAGTAGGTTTGCAGCTAACTTGAAGCAAGCTTCAGACAGTGATGCTCGGATTGAGCGCTCAGTCAGAGAACATTCAGCTCTCATGTCCATCCTTGATCGTCGCCCGATTGAATCTGCCCTCCCAACTCTGGCTAGGCCAATAATGTCTTTGGATGCCAATGAAGATGCTATTTTAGGGGCCCTGAAGCAAAGCTTGCGGCAATTGGAAACGCTCGGTGCTCAACGAGCAGGCCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGTGCAGTGTATTTCATTATATTCTTTGCTTAGCTTTTTTTTCACTTCAGTGATCTCCCACCCCCAATTGCAACTTAATCTCTTTCAGATGCTTCTCTCTTGTTTGCTACTCATTGTGTTATTAAGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005829 GO:0005911 GO:0006996 GO:0007032 GO:0007033 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016050 GO:0022603 GO:0030054 GO:0031156 GO:0031285 GO:0031286 GO:0031410 GO:0031982 GO:0032101 GO:0032102 GO:0032104 GO:0032105 GO:0032107 GO:0032108 GO:0032182 GO:0032501 GO:0032502 GO:0036257 GO:0042173 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043621 GO:0043900 GO:0043901 GO:0043937 GO:0043938 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045881 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051241 GO:0055044 GO:0065007 GO:0071840 GO:0075260 GO:0075262 GO:0097708 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ALIX_LYPXL_bnd BRO1

Protein Analysis

639

Amino Acids

71.51

Weight (kDa)

6.43

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRO1	PF03097	14 - 393	1.7e-108	BRO1-like domain
ALIX_LYPXL_bnd	PF13949	428 - 596	3.5e-38	ALIX V-shaped domain binding to HIV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15130
fragaria_vesca	FvH4_4g26260 FvH4_4g26260
malus_domestica	MD13G1031100.v1.1 MD16G1033300.v1.1
prunus_persica	Prupe.1G321000_v2.0.a1 Prupe.1G321000_v2.0.a1
pyrus_communis	pycom13g02720 pycom16g02790
rosa_chinensis	RchiOBHm_Chr4g0433861
rosa_laevigata	RLG00000006722
rosa_multiflora	Rmu_co8294453.1_g000001 Rmu_sc0000352.1_g000001 Rmu_ssc0000164.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375260
rosa_rugosa	Rorug04G0271800 Rorug04G0271900
rosa_samantha	Rh4AG326600 Rh4BG334000 Rh4CG349700 Rh4DG330800
rosa_wichuraiana	Rw4G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	667, 1331
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	3 cut(s)	8, 405, 444
AccII	CGCG	4 cut(s)	126, 219, 435, 491
AccIII	TCCGGA	1 cut(s)	1123
AclWI	GGATC	1 cut(s)	1302
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	5 cut(s)	625, 715, 921, 1276, 1395
AcuI	CTGAAG	4 cut(s)	864, 1539, 1727, 1818
AcyI	GRCGYC	4 cut(s)	5, 11, 324, 399
AdeI	CACNNNGTG	1 cut(s)	653
AfaI	GTAC	3 cut(s)	689, 1154, 1404
AfeI	AGCGCT	1 cut(s)	1580
AfiI	CCNNNNNNNGG	9 cut(s)	315, 373, 457, 534, 906, 973, 1009, 1227, 1651
AflIII	ACRYGT	1 cut(s)	1469
AgsI	TTSAA	8 cut(s)	112, 241, 331, 391, 730, 1546, 1634, 1760
AjnI	CCWGG	5 cut(s)	456, 649, 671, 1148, 1389
AleI	CACNNNNGTG	2 cut(s)	548, 1835
Alw21I	GWGCWC	4 cut(s)	542, 880, 1419, 1744
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	1302
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	1123
Aor51HI	AGCGCT	1 cut(s)	1580
ApaI	GGGCCC	2 cut(s)	1337, 1705
ApeKI	GCWGC	8 cut(s)	166, 352, 642, 707, 911, 914, 1360, 1535
ApoI	RAATTY	5 cut(s)	625, 715, 921, 1276, 1395
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
AspLEI	GCGC	8 cut(s)	126, 189, 401, 437, 491, 572, 607, 1581
AspS9I	GGNCC	7 cut(s)	130, 289, 1243, 1333, 1334, 1701, 1702
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	3 cut(s)	298, 1069, 1396
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	289, 1243
BaeGI	GKGCMC	2 cut(s)	1337, 1705
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	4 cut(s)	542, 1337, 1419, 1705
BbsI	GAAGAC	3 cut(s)	68, 150, 1767
Bbv12I	GWGCWC	4 cut(s)	542, 880, 1419, 1744
BbvI	GCAGC	8 cut(s)	178, 364, 654, 694, 901, 923, 1372, 1547
BccI	CCATC	2 cut(s)	56, 1619
BceAI	ACGGC	3 cut(s)	365, 386, 463
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	5 cut(s)	458, 651, 673, 1150, 1391
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	4 cut(s)	815, 881, 1113, 1656
BfmI	CTRYAG	3 cut(s)	406, 802, 1338
BfoI	RGCGCY	3 cut(s)	190, 402, 1582
BfuAI	ACCTGC	2 cut(s)	667, 1331
BglII	AGATCT	1 cut(s)	666
BlpI	GCTNAGC	1 cut(s)	1817
Bme1390I	CCNGG	6 cut(s)	458, 574, 651, 673, 1150, 1391
Bme18I	GGWCC	2 cut(s)	289, 1243
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	7 cut(s)	130, 289, 1243, 1333, 1334, 1701, 1702
BmiI	GGNNCC	6 cut(s)	400, 1014, 1334, 1335, 1702, 1703
BmrFI	CCNGG	6 cut(s)	458, 574, 651, 673, 1150, 1391
BmrI	ACTGGG	1 cut(s)	1441
BmsI	GCATC	9 cut(s)	567, 582, 919, 1078, 1432, 1555, 1666, 1678, 1866
BmuI	ACTGGG	1 cut(s)	1441
BpiI	GAAGAC	3 cut(s)	68, 150, 1767
BplI	GAGNNNNNCTC	4 cut(s)	987, 1019, 1215, 1247
BpmI	CTGGAG	2 cut(s)	602, 655
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	1817
BpuEI	CTTGAG	2 cut(s)	989, 1217
BpuMI	CCSGG	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	4 cut(s)	5, 11, 324, 399
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	522, 1053
BsaWI	WCCGGW	1 cut(s)	1123
BsaXI	ACNNNNNCTCC	4 cut(s)	703, 733, 1091, 1121
Bsc4I	CCNNNNNNNGG	9 cut(s)	315, 373, 457, 534, 906, 973, 1009, 1227, 1651
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	1209, 1447
Bse3DI	GCAATG	1 cut(s)	1077
BseAI	TCCGGA	1 cut(s)	1123
BseBI	CCWGG	5 cut(s)	458, 651, 673, 1150, 1391
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	522, 1053
BseGI	GGATG	6 cut(s)	360, 582, 934, 1093, 1611, 1681
BseLI	CCNNNNNNNGG	9 cut(s)	315, 373, 457, 534, 906, 973, 1009, 1227, 1651
BseMI	GCAATG	1 cut(s)	1077
BseMII	CTCAG	4 cut(s)	614, 1344, 1499, 1596
BseNI	ACTGG	2 cut(s)	1209, 1447
BseRI	GAGGAG	2 cut(s)	10, 215
BseSI	GKGCMC	2 cut(s)	1337, 1705
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	8 cut(s)	178, 364, 654, 694, 901, 923, 1372, 1547
BsgI	GTGCAG	2 cut(s)	900, 1811
Bsh1236I	CGCG	4 cut(s)	126, 219, 435, 491
Bsh1285I	CGRYCG	2 cut(s)	433, 451
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	433, 451
BsiHKAI	GWGCWC	4 cut(s)	542, 880, 1419, 1744
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	281, 486, 573, 1124
BslFI	GGGAC	2 cut(s)	187, 521
BslI	CCNNNNNNNGG	9 cut(s)	315, 373, 457, 534, 906, 973, 1009, 1227, 1651
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	187, 521
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	368
Bsp120I	GGGCCC	2 cut(s)	1333, 1701
Bsp1286I	GDGCHC	6 cut(s)	542, 880, 1337, 1419, 1705, 1744
Bsp13I	TCCGGA	1 cut(s)	1123
Bsp143I	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
Bsp1720I	GCTNAGC	1 cut(s)	1817
Bsp19I	CCATGG	1 cut(s)	1053
BspCNI	CTCAG	4 cut(s)	613, 1345, 1498, 1595
BspDI	ATCGAT	1 cut(s)	75
BspEI	TCCGGA	1 cut(s)	1123
BspFNI	CGCG	4 cut(s)	126, 219, 435, 491
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	6 cut(s)	400, 1014, 1334, 1335, 1702, 1703
BspMAI	CTGCAG	1 cut(s)	1342
BspMI	ACCTGC	2 cut(s)	667, 1331
BspPI	GGATC	1 cut(s)	1302
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	1077
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	1209, 1447
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	522, 1053
BssMI	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
BssNI	GRCGYC	4 cut(s)	5, 11, 324, 399
BssT1I	CCWWGG	2 cut(s)	522, 1053
Bst2UI	CCWGG	5 cut(s)	458, 651, 673, 1150, 1391
Bst4CI	ACNGT	8 cut(s)	304, 442, 550, 687, 858, 962, 1130, 1562
Bst6I	CTCTTC	3 cut(s)	392, 828, 1290
BstACI	GRCGYC	4 cut(s)	5, 11, 324, 399
BstAPI	GCANNNNNTGC	1 cut(s)	1717
BstDSI	CCRYGG	1 cut(s)	1053
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	6 cut(s)	360, 582, 934, 1093, 1611, 1681
BstFNI	CGCG	4 cut(s)	126, 219, 435, 491
BstH2I	RGCGCY	3 cut(s)	190, 402, 1582
BstHHI	GCGC	8 cut(s)	126, 189, 401, 437, 491, 572, 607, 1581
BstKTI	GATC	6 cut(s)	79, 433, 669, 1297, 1621, 1842
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
BstMCI	CGRYCG	2 cut(s)	433, 451
BstMWI	GCNNNNNNNGC	8 cut(s)	93, 467, 476, 524, 586, 707, 1717, 1748
BstNI	CCWGG	5 cut(s)	458, 651, 673, 1150, 1391
BstNSI	RCATGY	2 cut(s)	766, 1768
BstSCI	CCNGG	6 cut(s)	456, 572, 649, 671, 1148, 1389
BstSFI	CTRYAG	3 cut(s)	406, 802, 1338
BstSLI	GKGCMC	2 cut(s)	1337, 1705
BstUI	CGCG	4 cut(s)	126, 219, 435, 491
BstV1I	GCAGC	8 cut(s)	178, 364, 654, 694, 901, 923, 1372, 1547
BstV2I	GAAGAC	3 cut(s)	68, 150, 1767
BstX2I	RGATCY	2 cut(s)	666, 1294
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	666, 1294
BstZI	CGGCCG	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	1053
BtgZI	GCGATG	2 cut(s)	88, 460
BtsCI	GGATG	6 cut(s)	360, 582, 934, 1093, 1611, 1681
BtsI	GCAGTG	2 cut(s)	1323, 1799
BtsIMutI	CAGTG	6 cut(s)	1155, 1216, 1323, 1567, 1799, 1842
BveI	ACCTGC	2 cut(s)	667, 1331
CciI	TCATGA	1 cut(s)	1005
CfoI	GCGC	8 cut(s)	126, 189, 401, 437, 491, 572, 607, 1581
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	7 cut(s)	130, 289, 1243, 1333, 1334, 1701, 1702
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	4 cut(s)	19, 332, 604, 1192
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	3 cut(s)	688, 1153, 1403
CviAII	CATG	7 cut(s)	40, 763, 824, 1006, 1054, 1606, 1765
CviQI	GTAC	3 cut(s)	688, 1153, 1403
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	6 cut(s)	78, 432, 668, 1296, 1620, 1841
DpnII	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
DraIII	CACNNNGTG	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	448
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	392, 828, 1290
EarI	CTCTTC	3 cut(s)	392, 828, 1290
EciI	GGCGGA	2 cut(s)	13, 472
Ecl136II	GAGCTC	2 cut(s)	540, 1417
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	522, 1053
Eco147I	AGGCCT	5 cut(s)	347, 461, 527, 1483, 1755
Eco24I	GRGCYC	4 cut(s)	542, 1337, 1419, 1705
Eco31I	GGTCTC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	756
Eco47I	GGWCC	2 cut(s)	289, 1243
Eco47III	AGCGCT	1 cut(s)	1580
Eco52I	CGGCCG	1 cut(s)	448
Eco53kI	GAGCTC	2 cut(s)	540, 1417
Eco57I	CTGAAG	4 cut(s)	864, 1539, 1727, 1818
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	2 cut(s)	540, 1417
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	4 cut(s)	1333, 1334, 1701, 1702
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	5 cut(s)	456, 649, 671, 1148, 1389
EcoRV	GATATC	1 cut(s)	756
EcoT14I	CCWWGG	2 cut(s)	522, 1053
EcoT38I	GRGCYC	4 cut(s)	542, 1337, 1419, 1705
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
ErhI	CCWWGG	2 cut(s)	522, 1053
FaeI	CATG	7 cut(s)	43, 766, 827, 1009, 1057, 1609, 1768
FalI	AAGNNNNNCTT	4 cut(s)	1700, 1732, 1752, 1784
FaqI	GGGAC	2 cut(s)	187, 521
FatI	CATG	7 cut(s)	39, 762, 823, 1005, 1053, 1605, 1764
FauI	CCCGC	3 cut(s)	221, 272, 498
FblI	GTMKAC	3 cut(s)	8, 405, 444
FokI	GGATG	6 cut(s)	347, 589, 941, 1100, 1598, 1688
FriOI	GRGCYC	4 cut(s)	542, 1337, 1419, 1705
FspBI	CTAG	4 cut(s)	815, 881, 1113, 1656
GlaI	GCGC	8 cut(s)	125, 188, 400, 436, 490, 571, 606, 1580
GsuI	CTGGAG	2 cut(s)	602, 655
HaeII	RGCGCY	3 cut(s)	190, 402, 1582
HapII	CCGG	4 cut(s)	281, 486, 573, 1124
HgaI	GACGC	4 cut(s)	19, 332, 604, 1192
HhaI	GCGC	8 cut(s)	126, 189, 401, 437, 491, 572, 607, 1581
Hin1I	GRCGYC	4 cut(s)	5, 11, 324, 399
Hin1II	CATG	7 cut(s)	43, 766, 827, 1009, 1057, 1609, 1768
Hin6I	GCGC	8 cut(s)	124, 187, 399, 435, 489, 570, 605, 1579
HinP1I	GCGC	8 cut(s)	124, 187, 399, 435, 489, 570, 605, 1579
HincII	GTYRAC	2 cut(s)	9, 445
HindII	GTYRAC	2 cut(s)	9, 445
HindIII	AAGCTT	4 cut(s)	699, 795, 1551, 1714
HinfI	GANTC	3 cut(s)	887, 1253, 1634
HpaII	CCGG	4 cut(s)	281, 486, 573, 1124
HphI	GGTGA	3 cut(s)	298, 1069, 1396
Hpy166II	GTNNAC	6 cut(s)	9, 406, 445, 1000, 1155, 1387
Hpy188I	TCNGA	7 cut(s)	121, 178, 1500, 1558, 1572, 1589, 1875
Hpy8I	GTNNAC	6 cut(s)	9, 406, 445, 1000, 1155, 1387
Hpy99I	CGWCG	8 cut(s)	10, 13, 260, 326, 446, 449, 550, 1626
HpyCH4III	ACNGT	8 cut(s)	304, 442, 550, 687, 858, 962, 1130, 1562
HpyCH4IV	ACGT	2 cut(s)	36, 1471
HpyF10VI	GCNNNNNNNGC	8 cut(s)	93, 467, 476, 524, 586, 707, 1717, 1748
HpySE526I	ACGT	2 cut(s)	36, 1471
Hsp92I	GRCGYC	4 cut(s)	5, 11, 324, 399
Hsp92II	CATG	7 cut(s)	43, 766, 827, 1009, 1057, 1609, 1768
HspAI	GCGC	8 cut(s)	124, 187, 399, 435, 489, 570, 605, 1579
KasI	GGCGCC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	1123
KroI	GCCGGC	1 cut(s)	485
KroNI	GCCGGC	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
LmnI	GCTCC	5 cut(s)	174, 179, 184, 537, 545
Lsp1109I	GCAGC	8 cut(s)	178, 364, 654, 694, 901, 923, 1372, 1547
LweI	GCATC	9 cut(s)	567, 582, 919, 1078, 1432, 1555, 1666, 1678, 1866
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	4 cut(s)	815, 881, 1113, 1656
MaeII	ACGT	2 cut(s)	36, 1471
MaeIII	GTNAC	2 cut(s)	304, 962
MalI	GATC	6 cut(s)	78, 432, 668, 1296, 1620, 1841
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
MfeI	CAATTG	2 cut(s)	1724, 1853
MflI	RGATCY	2 cut(s)	666, 1294
MhlI	GDGCHC	6 cut(s)	542, 880, 1337, 1419, 1705, 1744
Mly113I	GGCGCC	1 cut(s)	399
MlyI	GAGTC	2 cut(s)	896, 1262
MmeI	TCCRAC	3 cut(s)	201, 661, 1454
MreI	CGCCGGCG	1 cut(s)	485
MroI	TCCGGA	1 cut(s)	1123
MroNI	GCCGGC	1 cut(s)	485
MseI	TTAA	7 cut(s)	770, 860, 957, 1770, 1863, 1910, 1918
MslI	CAYNNNNRTG	4 cut(s)	548, 1160, 1410, 1835
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	4 cut(s)	281, 486, 573, 1124
MspR9I	CCNGG	6 cut(s)	458, 574, 651, 673, 1150, 1391
MunI	CAATTG	2 cut(s)	1724, 1853
MvaI	CCWGG	5 cut(s)	458, 651, 673, 1150, 1391
MvnI	CGCG	4 cut(s)	126, 219, 435, 491
MwoI	GCNNNNNNNGC	8 cut(s)	93, 467, 476, 524, 586, 707, 1717, 1748
NaeI	GCCGGC	1 cut(s)	487
NarI	GGCGCC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	1053
NdeII	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
NgoMIV	GCCGGC	1 cut(s)	485
NlaIII	CATG	7 cut(s)	43, 766, 827, 1009, 1057, 1609, 1768
NlaIV	GGNNCC	6 cut(s)	400, 1014, 1334, 1335, 1702, 1703
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	2 cut(s)	766, 1768
OliI	CACNNNNGTG	2 cut(s)	548, 1835
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	1 cut(s)	1005
PceI	AGGCCT	5 cut(s)	347, 461, 527, 1483, 1755
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 318
PdiI	GCCGGC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	1634
PflFI	GACNNNGTC	1 cut(s)	13
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	2 cut(s)	895, 1261
PluTI	GGCGCC	1 cut(s)	402
PpsI	GAGTC	2 cut(s)	895, 1261
Psp124BI	GAGCTC	2 cut(s)	542, 1419
Psp6I	CCWGG	5 cut(s)	456, 649, 671, 1148, 1389
PspGI	CCWGG	5 cut(s)	456, 649, 671, 1148, 1389
PspN4I	GGNNCC	6 cut(s)	400, 1014, 1334, 1335, 1702, 1703
PspOMI	GGGCCC	2 cut(s)	1333, 1701
PspPI	GGNCC	7 cut(s)	130, 289, 1243, 1333, 1334, 1701, 1702
PstI	CTGCAG	1 cut(s)	1342
PsuI	RGATCY	2 cut(s)	666, 1294
PsyI	GACNNNGTC	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	3 cut(s)	689, 1154, 1404
RsaNI	GTAC	3 cut(s)	688, 1153, 1403
RseI	CAYNNNNRTG	4 cut(s)	548, 1160, 1410, 1835
SacI	GAGCTC	2 cut(s)	542, 1419
SalI	GTCGAC	2 cut(s)	7, 443
SaqAI	TTAA	7 cut(s)	770, 860, 957, 1770, 1863, 1910, 1918
Sau3AI	GATC	6 cut(s)	76, 430, 666, 1294, 1618, 1839
Sau96I	GGNCC	7 cut(s)	130, 289, 1243, 1333, 1334, 1701, 1702
SbfI	CCTGCAGG	1 cut(s)	1342
SchI	GAGTC	2 cut(s)	896, 1262
ScrFI	CCNGG	6 cut(s)	458, 574, 651, 673, 1150, 1391
SdaI	CCTGCAGG	1 cut(s)	1342
SduI	GDGCHC	6 cut(s)	542, 880, 1337, 1419, 1705, 1744
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	9 cut(s)	567, 582, 919, 1078, 1432, 1555, 1666, 1678, 1866
SfcI	CTRYAG	3 cut(s)	406, 802, 1338
SfoI	GGCGCC	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	485
SgrDI	CGTCGACG	2 cut(s)	7, 443
SinI	GGWCC	2 cut(s)	289, 1243
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	4 cut(s)	548, 1160, 1410, 1835
SmlI	CTYRAG	3 cut(s)	368, 968, 1232
SmoI	CTYRAG	3 cut(s)	368, 968, 1232
Sse8387I	CCTGCAGG	1 cut(s)	1342
SseBI	AGGCCT	5 cut(s)	347, 461, 527, 1483, 1755
SspDI	GGCGCC	1 cut(s)	398
SspMI	CTAG	4 cut(s)	815, 881, 1113, 1656
SstI	GAGCTC	2 cut(s)	542, 1419
StuI	AGGCCT	5 cut(s)	347, 461, 527, 1483, 1755
StyD4I	CCNGG	6 cut(s)	456, 572, 649, 671, 1148, 1389
StyI	CCWWGG	2 cut(s)	522, 1053
TaaI	ACNGT	8 cut(s)	304, 442, 550, 687, 858, 962, 1130, 1562
TaiI	ACGT	2 cut(s)	39, 1474
TaqI	TCGA	9 cut(s)	8, 54, 75, 141, 258, 369, 444, 530, 1167
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	7 cut(s)	219, 380, 453, 456, 518, 779, 1723
TfiI	GAWTC	1 cut(s)	1634
Tru1I	TTAA	7 cut(s)	770, 860, 957, 1770, 1863, 1910, 1918
Tru9I	TTAA	7 cut(s)	770, 860, 957, 1770, 1863, 1910, 1918
TscAI	CASTG	6 cut(s)	1162, 1216, 1323, 1567, 1799, 1842
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	8 cut(s)	166, 352, 642, 707, 911, 914, 1360, 1535
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	463, 995, 1698, 1791, 1793
TspGWI	ACGGA	1 cut(s)	1307
TspRI	CASTG	6 cut(s)	1162, 1216, 1323, 1567, 1799, 1842
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	289, 1243
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	5 cut(s)	625, 715, 921, 1276, 1395
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	2 cut(s)	766, 1768
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	3 cut(s)	8, 405, 444
XspI	CTAG	4 cut(s)	815, 881, 1113, 1656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.