Rmu_sc0000352.1_g000001

ALG-2 interacting protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000352.1
Physical Location & Seq
Reverse (-)
22 .. 738
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000352.1_g000001.1.cds

Sequence Viewer

Length: 717 bp
atggcgtcgacgccgtcctcctccgccaccacgaacgtcatgctcgccatcttcgagaagaagaccaccccaatcgatctctaccgcccactccgcaactacatcgccttcaattactccgagcgcgaggcccagaacctcgaagacgacctccaaaccctaaagcagctccgctccgacttggagcgccaacccgacccgtccctccccgcccgccgcgacctcctccaaaattacttcaaagccctctgcctcgtcgagacccgcttcccaatctcgccggacaaggaccacatcaacaccgtcaccttcgtctggcacgacgccttcaagaacaagcagaaggcctcccagcagaacatccacctcgagaaggccgccgttctcttcaatttgggcgccgtctacagccagattgggctttcctacgatcgcgccaccgtcgacggccgccgccaggcctcccacgccttcatcgcctccgccggcgcgtttgcgtttctgcgggacaatgcggcgaccaaggcctcgattgggagctccacgacggtggatttgtcggtcgagtgcgccgggatgctggagaggttgatgctggctcaggcgcaggagagcgtctttgagaattctatagccaaaggcagcacacctggtgtttgtgccaagatctccaggcaggtgtgtgtttcgaattctgccttaattgattggttatga

Protein Analysis

238

Amino Acids

26.37

Weight (kDa)

7.67

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 398
AccBSI CCGCTC 1 cut(s) 174
AccI GTMKAC 3 cut(s) 8, 405, 444
AccII CGCG 4 cut(s) 126, 219, 435, 491
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 2 cut(s) 625, 691
AcyI GRCGYC 4 cut(s) 5, 11, 324, 399
AdeI CACNNNGTG 1 cut(s) 653
AfiI CCNNNNNNNGG 4 cut(s) 315, 373, 457, 534
AgsI TTSAA 4 cut(s) 112, 241, 331, 391
AjnI CCWGG 3 cut(s) 456, 649, 671
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 2 cut(s) 169, 540
AluI AGCT 2 cut(s) 169, 540
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 6 cut(s) 129, 345, 375, 448, 459, 525
ApeKI GCWGC 2 cut(s) 166, 642
ApoI RAATTY 2 cut(s) 625, 691
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspLEI GCGC 7 cut(s) 126, 189, 401, 437, 491, 572, 607
AspS9I GGNCC 2 cut(s) 130, 289
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 68, 150
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 178, 654
BccI CCATC 1 cut(s) 56
BceAI ACGGC 3 cut(s) 365, 386, 463
BcgI CGANNNNNNTGC 4 cut(s) 22, 56, 85, 119
BciT130I CCWGG 3 cut(s) 458, 651, 673
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 406, 630
BfoI RGCGCY 2 cut(s) 190, 402
BfuAI ACCTGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 666
BisI GCNGC 7 cut(s) 167, 217, 378, 451, 454, 516, 643
BlsI GCNGC 7 cut(s) 168, 218, 379, 452, 455, 517, 644
Bme1390I CCNGG 4 cut(s) 458, 574, 651, 673
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 130, 289
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 4 cut(s) 458, 574, 651, 673
BmsI GCATC 2 cut(s) 567, 582
BpiI GAAGAC 2 cut(s) 68, 150
BpmI CTGGAG 2 cut(s) 602, 655
Bpu10I CCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 574
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 4 cut(s) 5, 11, 324, 399
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 373, 457, 534
Bse118I RCCGGY 1 cut(s) 485
BseBI CCWGG 3 cut(s) 458, 651, 673
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 2 cut(s) 360, 582
BseLI CCNNNNNNNGG 4 cut(s) 315, 373, 457, 534
BseMII CTCAG 1 cut(s) 614
BseRI GAGGAG 2 cut(s) 10, 215
BseX3I CGGCCG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 178, 654
BseYI CCCAGC 1 cut(s) 351
Bsh1236I CGCG 4 cut(s) 126, 219, 435, 491
Bsh1285I CGRYCG 3 cut(s) 433, 451, 564
BshFI GGCC 6 cut(s) 131, 347, 377, 450, 461, 527
BshNI GGYRCC 1 cut(s) 398
BshVI ATCGAT 1 cut(s) 75
BsiEI CGRYCG 3 cut(s) 433, 451, 564
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 3 cut(s) 281, 486, 573
BslFI GGGAC 2 cut(s) 187, 521
BslI CCNNNNNNNGG 4 cut(s) 315, 373, 457, 534
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 187, 521
BsnI GGCC 6 cut(s) 131, 347, 377, 450, 461, 527
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 3 cut(s) 76, 430, 666
BspANI GGCC 6 cut(s) 131, 347, 377, 450, 461, 527
BspCNI CTCAG 1 cut(s) 613
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 4 cut(s) 126, 219, 435, 491
BspLI GGNNCC 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 3 cut(s) 76, 430, 666
BssNI GRCGYC 4 cut(s) 5, 11, 324, 399
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 458, 651, 673
Bst4CI ACNGT 3 cut(s) 304, 442, 550
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 4 cut(s) 5, 11, 324, 399
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 45, 214, 487, 597
BstDEI CTNAG 1 cut(s) 600
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 360, 582
BstFNI CGCG 4 cut(s) 126, 219, 435, 491
BstH2I RGCGCY 2 cut(s) 190, 402
BstHHI GCGC 7 cut(s) 126, 189, 401, 437, 491, 572, 607
BstKTI GATC 3 cut(s) 79, 433, 669
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 76, 430, 666
BstMCI CGRYCG 3 cut(s) 433, 451, 564
BstMWI GCNNNNNNNGC 4 cut(s) 93, 467, 476, 524
BstNI CCWGG 3 cut(s) 458, 651, 673
BstSCI CCNGG 4 cut(s) 456, 572, 649, 671
BstSFI CTRYAG 2 cut(s) 406, 630
BstUI CGCG 4 cut(s) 126, 219, 435, 491
BstV1I GCAGC 2 cut(s) 178, 654
BstV2I GAAGAC 2 cut(s) 68, 150
BstX2I RGATCY 1 cut(s) 666
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 1 cut(s) 666
BstZI CGGCCG 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 6 cut(s) 131, 347, 377, 450, 461, 527
BsuTUI ATCGAT 1 cut(s) 75
BtgZI GCGATG 2 cut(s) 88, 460
BtsCI GGATG 2 cut(s) 360, 582
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 4 cut(s) 45, 214, 487, 597
CfoI GCGC 7 cut(s) 126, 189, 401, 437, 491, 572, 607
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 2 cut(s) 130, 289
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 3 cut(s) 19, 332, 604
CsiI ACCWGGT 1 cut(s) 649
CviAII CATG 1 cut(s) 40
DdeI CTNAG 1 cut(s) 600
DinI GGCGCC 1 cut(s) 400
DpnI GATC 3 cut(s) 78, 432, 668
DpnII GATC 3 cut(s) 76, 430, 666
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 448
EagI CGGCCG 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 2 cut(s) 13, 472
Ecl136II GAGCTC 1 cut(s) 540
EclXI CGGCCG 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 522
Eco147I AGGCCT 3 cut(s) 347, 461, 527
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 289
Eco52I CGGCCG 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 540
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 625, 691
EcoRII CCWGG 3 cut(s) 456, 649, 671
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 542
EgeI GGCGCC 1 cut(s) 400
EheI GGCGCC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 632, 715
FaqI GGGAC 2 cut(s) 187, 521
FatI CATG 1 cut(s) 39
FauI CCCGC 4 cut(s) 217, 221, 272, 498
FblI GTMKAC 3 cut(s) 8, 405, 444
Fnu4HI GCNGC 7 cut(s) 167, 217, 378, 451, 454, 516, 643
FokI GGATG 2 cut(s) 347, 589
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 7 cut(s) 167, 217, 378, 451, 454, 516, 643
GlaI GCGC 7 cut(s) 125, 188, 400, 436, 490, 571, 606
GluI GCNGC 7 cut(s) 167, 217, 378, 451, 454, 516, 643
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 2 cut(s) 602, 655
HaeII RGCGCY 2 cut(s) 190, 402
HaeIII GGCC 6 cut(s) 131, 347, 377, 450, 461, 527
HapII CCGG 3 cut(s) 281, 486, 573
HgaI GACGC 3 cut(s) 19, 332, 604
HhaI GCGC 7 cut(s) 126, 189, 401, 437, 491, 572, 607
Hin1I GRCGYC 4 cut(s) 5, 11, 324, 399
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 7 cut(s) 124, 187, 399, 435, 489, 570, 605
HinP1I GCGC 7 cut(s) 124, 187, 399, 435, 489, 570, 605
HincII GTYRAC 2 cut(s) 9, 445
HindII GTYRAC 2 cut(s) 9, 445
HpaII CCGG 3 cut(s) 281, 486, 573
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 9, 406, 445
Hpy188I TCNGA 2 cut(s) 121, 178
Hpy188III TCNNGA 4 cut(s) 55, 259, 331, 370
Hpy8I GTNNAC 3 cut(s) 9, 406, 445
Hpy99I CGWCG 7 cut(s) 10, 13, 260, 326, 446, 449, 550
HpyAV CCTTC 6 cut(s) 118, 319, 337, 337, 367, 481
HpyCH4III ACNGT 3 cut(s) 304, 442, 550
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 467, 476, 524
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 4 cut(s) 5, 11, 324, 399
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 7 cut(s) 124, 187, 399, 435, 489, 570, 605
KasI GGCGCC 1 cut(s) 398
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 76, 430, 666
LmnI GCTCC 5 cut(s) 174, 179, 184, 537, 545
Lsp1109I GCAGC 2 cut(s) 178, 654
LweI GCATC 2 cut(s) 567, 582
MabI ACCWGGT 1 cut(s) 649
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 78, 432, 668
MbiI CCGCTC 1 cut(s) 174
MboI GATC 3 cut(s) 76, 430, 666
MboII GAAGA 5 cut(s) 43, 70, 73, 155, 379
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 6 cut(s) 112, 232, 391, 625, 691, 702
Mly113I GGCGCC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 201
MreI CGCCGGCG 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 485
MseI TTAA 1 cut(s) 701
MslI CAYNNNNRTG 1 cut(s) 548
MspI CCGG 3 cut(s) 281, 486, 573
MspR9I CCNGG 4 cut(s) 458, 574, 651, 673
MvaI CCWGG 3 cut(s) 458, 651, 673
MvnI CGCG 4 cut(s) 126, 219, 435, 491
MwoI GCNNNNNNNGC 4 cut(s) 93, 467, 476, 524
NaeI GCCGGC 1 cut(s) 487
NarI GGCGCC 1 cut(s) 399
NciI CCSGG 1 cut(s) 574
NdeII GATC 3 cut(s) 76, 430, 666
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 304
NspV TTCGAA 1 cut(s) 689
OliI CACNNNNGTG 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 368
PaqCI CACCTGC 1 cut(s) 667
PceI AGGCCT 3 cut(s) 347, 461, 527
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 318
PdiI GCCGGC 1 cut(s) 487
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 7 cut(s) 168, 218, 379, 452, 455, 517, 644
Ple19I CGATCG 1 cut(s) 433
PluTI GGCGCC 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 542
Psp6I CCWGG 3 cut(s) 456, 649, 671
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 3 cut(s) 456, 649, 671
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 130, 289
PsuI RGATCY 1 cut(s) 666
PsyI GACNNNGTC 1 cut(s) 13
PvuI CGATCG 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 548
SacI GAGCTC 1 cut(s) 542
SalI GTCGAC 2 cut(s) 7, 443
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 7 cut(s) 167, 217, 378, 451, 454, 516, 643
Sau3AI GATC 3 cut(s) 76, 430, 666
Sau96I GGNCC 2 cut(s) 130, 289
ScrFI CCNGG 4 cut(s) 458, 574, 651, 673
SduI GDGCHC 1 cut(s) 542
SexAI ACCWGGT 1 cut(s) 649
SfaNI GCATC 2 cut(s) 567, 582
SfcI CTRYAG 2 cut(s) 406, 630
SfoI GGCGCC 1 cut(s) 400
Sfr274I CTCGAG 1 cut(s) 368
SfuI TTCGAA 1 cut(s) 689
SgrAI CRCCGGYG 1 cut(s) 485
SgrDI CGTCGACG 2 cut(s) 7, 443
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 6 cut(s) 112, 232, 391, 625, 691, 702
SseBI AGGCCT 3 cut(s) 347, 461, 527
SspDI GGCGCC 1 cut(s) 398
SstI GAGCTC 1 cut(s) 542
StuI AGGCCT 3 cut(s) 347, 461, 527
StyD4I CCNGG 4 cut(s) 456, 572, 649, 671
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 304, 442, 550
TaiI ACGT 1 cut(s) 39
TaqII GACCGA 1 cut(s) 550
TasI AATT 6 cut(s) 112, 232, 391, 625, 691, 702
TauI GCSGC 5 cut(s) 219, 380, 453, 456, 518
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 166, 642
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 463
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 2 cut(s) 625, 691
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 3 cut(s) 8, 405, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.