Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318615.1

Orthogroup ID

OG0007644

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 702

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 367 bp

caatggctgtgaagaacctgtgatccataaggatgtaaagtcttccaacatccttctttcagatgattttgagccacagctctcagattttggacttgcgagtttggcatcgacgtcaatgcatattgattgcacggatgttgctggaacatttggttacttggctccagaatacttcatgcatggcaaggttagtgataaaattgatgtctatgcctttggtgtggtactccttgagcttctttctggtagacaaccaatctacagcaaatgtgcaaaggaccaggaaagtctggtgatgtgggcaaagccaatactgaagcgtgggggaggttgcccaactgctagatccaagcctgggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

121

Amino Acids

13.14

Weight (kDa)

5.88

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63940
fragaria_vesca	FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700
malus_domestica	MD15G1134800.v1.1
prunus_persica	Prupe.4G275600_v2.0.a1
pyrus_communis	pycom15g12160
rosa_chinensis	RchiOBHm_Chr2g0122201
rosa_laevigata	RLG00000018670
rosa_multiflora	Rmu_co8318615.1_g000001 Rmu_sc0003133.1_g000014 Rmu_sc0013150.1_g000002 Rmu_sc0025362.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121770
rosa_rugosa	Rorug02G0237200 Rorug05G0310500
rosa_samantha	Rh2AG295700 Rh2BG304700 Rh2CG283100 Rh2DG319700
rosa_wichuraiana	Rw2G023550 Rw2G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	17, 343
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	283, 356
AloI	GAACNNNNNNTCC	2 cut(s)	7, 39
AluBI	AGCT	2 cut(s)	80, 239
AluI	AGCT	2 cut(s)	80, 239
AlwI	GGATC	2 cut(s)	17, 343
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	285, 358
BfaI	CTAG	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	285, 358
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	285, 358
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	285, 358
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	38, 49, 143
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	22, 348
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	2 cut(s)	17, 343
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	22, 348
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	285, 358
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	3 cut(s)	38, 49, 143
BstKTI	GATC	2 cut(s)	25, 351
BstMBI	GATC	2 cut(s)	22, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	2 cut(s)	285, 358
BstSCI	CCNGG	2 cut(s)	283, 356
BstSFI	CTRYAG	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	38, 49, 143
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	179, 183
CviJI	RGCY	7 cut(s)	7, 74, 80, 165, 239, 311, 356
CviKI_1	RGCY	7 cut(s)	7, 74, 80, 165, 239, 311, 356
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	24, 350
DpnII	GATC	2 cut(s)	22, 348
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	283, 356
EcoT22I	ATGCAT	2 cut(s)	124, 184
FaeI	CATG	2 cut(s)	182, 186
FaiI	YATR	5 cut(s)	28, 124, 180, 184, 214
FatI	CATG	2 cut(s)	178, 182
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	3 cut(s)	36, 45, 150
FspBI	CTAG	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	182, 186
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	62, 86
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	122, 133, 182, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	182, 186
Kzo9I	GATC	2 cut(s)	22, 348
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	8 cut(s)	31, 130, 181, 232, 270, 279, 297, 343
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	2 cut(s)	24, 350
MboI	GATC	2 cut(s)	22, 348
MboII	GAAGA	2 cut(s)	24, 34
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	1 cut(s)	324
Mph1103I	ATGCAT	2 cut(s)	124, 184
MslI	CAYNNNNRTG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	285, 358
MvaI	CCWGG	2 cut(s)	285, 358
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	2 cut(s)	22, 348
NlaIII	CATG	2 cut(s)	182, 186
NlaIV	GGNNCC	1 cut(s)	166
NsiI	ATGCAT	2 cut(s)	124, 184
Psp6I	CCWGG	2 cut(s)	283, 356
PspGI	CCWGG	2 cut(s)	283, 356
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	31
Sau3AI	GATC	2 cut(s)	22, 348
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	285, 358
SetI	ASST	6 cut(s)	20, 82, 117, 193, 241, 335
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	283, 356
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	346
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	2 cut(s)	124, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.