Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007644

Physical Location & Seq

Genomic Coordinates Forward (+)

36477103 .. 36481957

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0310500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGACCAAACCGGGCCTTGCAATCTCTTACACAAAGCGAGCTCTCACACAAACCCACCTTTCATCTCATACCAAACGTCTCTCTCACTCTCACCCCATTCCCTTCACTCCCAAACCCAGCAACACTATAAATGCACACCACCTGTTCGATAAAACTCCCCAGAGAGACCCCTTAGAATACACCCACTTACTCTTCGAGTACACTCGCAATGACCGCAACCATGAAGCCATCAACCTCTTTCTGGGTGCTTCCCGGGCCGGTCTACCGGTCAATGGGTCGGTTCTGTCTTCTGTGGTCAAGGCTTGTGGAAGCTTGTGTGATCAAGTTGTGGGTAGACAAGTGCATTGTCAGTGTGTCAAGTCCGGGCTTGGGGAAGACGTTAGTGTTGGGACCTCTCTTGTCGATATGTATATGAAAACCGAGGGTGTTGTGGAGGGGAGGAGAGTCTTTGATGAGATGAGGGAGACGAATGTAGTGTCATGGACTTCATTGATTTCGGGTTACGCAAGAAACGGATTGAATGACCAGGCGTTGGAGTTGTTTTCGCAGATGCAAATGGAAGGAAATAAGCCGAACCCGTTTACGTATGTGGCTGTGCTTGGAGTTTTGGCAGATGATGGGTTGGTTGAGAAGGGAAATCAGGTTCATGCCGTGGTTATAAAGAATGGTTATGTGGCGATTACATTCTTGTGCAATTCGTTGATTAACATGTATTTAAAGTCAGGGATGGTTAGTGAGGCTAGAGCTGTTTTTGATAGTATGCCAAGTAGAGATGAGGTTACATGGAATAGCTTGGTTGCAGGTTATGTTACGAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTAATCAGATGGGGCTTGCTGGTATTAAGTTCACGCAACCGATATTTGTTACTGTTATCAAGTTATGTGCTAACTATGAAGAATTGGGTTTTGCAAGACAGCTACATTGCCGTGTTTTGAAGAGTGGGTTGGCATCCCATCGCAATATTGAAACAGCAATCCTGGTGGCTTACAGTAAGTGCAGTGAAATGGACGATGCTTATAATATGTTCTCCATGATGCAAGGTGTTCAGAGTGTAGTAACTTGGACGGCCATGATCAGCGGGTACCTGCAGAATGGTGGAACAGAGAAAGGAGTGAAGTTATTCTGTAAAATGAGCAGAGAAGGTGTTAGACCAAATGATTTCACTTATTCTGCCATCATTATGGCCCACCCTTCTATATCTATATTCCAAGTGCATGCACAAGTTATAAAAACTAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACGCTTATGTTAAGACGGGAAATGTTCCTGAAGCTGAAAAAGTTTTCCAAACGATTGACGAGAAGGACATTGTAGCATGGTCAGCAATGCTTGCTGGATATGCTCAAATAGAAGACACCGTGGGAGCTATTAAAATTTTCCTCCAGTTGACAAGAAAAGGGGTCAAACCTAACGAGTTTACTTTGTCTAGTATCATTAATGCTTGCGCTGGACCTTCAGCAACAGTGGAGCAGGGGAAACAATTTCATGCTTGCTCAATTAAACTCAGGTTGAACAATACTTTGTGTCTAAGTAGTGCTCTTGTCACCATGTATGCAAAGATGGGGAATATTGAAAGTGCAAATGAAGTTTTCAAGAGACAAGGTGAGAGAGACTTAGTTTCGTGGAACTCTATGATCTCTGGATACGCACAACATGGTCAGGGGAATAAGGTTCTTGAAATATTTGAGGAGATGCGTAGACAAAATTTGGAAATTGATGGGATAACATTCATTCTCATAATCTCTGCCTGTACTCATGCAGGCTTAATAGATGAAGGTAAAAGATTTTTCAATATTATGGTCCAGGATTACAATATTGATCCTACAATGGAGCACTATTCTTGTATGGTTGATCTGTACAGCCGAGCCGGAAAGCTTGAAAAAGCGATGAATCTTATAAACAGCATGCCCTTCACTGCAGATGCAAATGTGTGGCGAGCTCTCTTGGGTGCTTGCCGTGTTCACCGCAACTTAGAGCTGGGAAAACTCGCAGCAGAAAAGCTTATTTCACTTCAGCCCCAAGATTCCGCTGCTTATGTTCTGTTGTCAAATATTTATGCTGCAGCTGGAAACTGGCAAGAGAGAGATAAAGTGAGGAAGTTGATGGATGAAAGAAAAGTGAAAAAGCAACCTGGGTATAGCTGGATTGAGGTGAAGAACAAGACCTATACATTCTTGGCCGGTGATGTTTCACATCCCATGTCAGACCGTATATACTCAAAACTTGATGAGTTGAATAACCGATTGAAGGATATGGGTTATCAGCCTGATACAAACTACGTGCTCCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTATCAACACAGTGAGAGGCTGGCCATTGCTTTTGGATTGATTGCCAAACCTCCAGGATCTCCTATCCAGATTTTGAAAAATCTTAGGGTATGTGGAGACTGTCACACTGTTATTAAATTAATTTCGGTGATAGAAGCGAGGGATATAGTTGTCAGAGATTCAAATCGATACCACCACTTCAAGGGTGGTTTATGCTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

866

Amino Acids

96.58

Weight (kDa)

7.55

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	155 - 203	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	157 - 204	4.7e-12	PPR repeat family
PPR_1	PF12854	157 - 185	2.5e-07	PPR repeat
PPR	PF01535	159 - 188	3.7e-08	PPR repeat
PPR_2	PF13041	360 - 403	1.9e-13	PPR repeat family
PPR	PF01535	362 - 392	2.1e-07	PPR repeat
PPR_2	PF13041	456 - 504	1.9e-09	PPR repeat family
PPR_2	PF13041	559 - 606	3.4e-11	PPR repeat family
PPR	PF01535	561 - 590	2.3e-09	PPR repeat
E_motif	PF20431	676 - 738	2.7e-20	E motif
Eplus_motif	PF20430	743 - 770	6.4e-09	E+ motif
DYW_deaminase	PF14432	774 - 866	2.3e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63940
fragaria_vesca	FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700 FvH4_1g24700
malus_domestica	MD15G1134800.v1.1
prunus_persica	Prupe.4G275600_v2.0.a1
pyrus_communis	pycom15g12160
rosa_chinensis	RchiOBHm_Chr2g0122201
rosa_laevigata	RLG00000018670
rosa_multiflora	Rmu_co8318615.1_g000001 Rmu_sc0003133.1_g000014 Rmu_sc0013150.1_g000002 Rmu_sc0025362.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121770
rosa_rugosa	Rorug02G0237200 Rorug05G0310500
rosa_samantha	Rh2AG295700 Rh2BG304700 Rh2CG283100 Rh2DG319700
rosa_wichuraiana	Rw2G023550 Rw2G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	659, 1047, 1256, 1961
Acc36I	ACCTGC	2 cut(s)	791, 1122
Acc65I	GGTACC	1 cut(s)	1110
AccB1I	GGYRCC	1 cut(s)	1110
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccI	GTMKAC	3 cut(s)	262, 334, 1762
AciI	CCGC	4 cut(s)	214, 1107, 2029, 2091
AclWI	GGATC	2 cut(s)	1877, 2449
AcoI	YGGCCR	3 cut(s)	1095, 2241, 2406
AcsI	RAATTY	2 cut(s)	1437, 1768
AcuI	CTGAAG	3 cut(s)	1353, 1503, 2060
AfaI	GTAC	4 cut(s)	200, 1112, 1816, 1922
AfiI	CCNNNNNNNGG	7 cut(s)	241, 272, 369, 532, 1286, 2311, 2566
AflIII	ACRYGT	1 cut(s)	708
AgeI	ACCGGT	1 cut(s)	265
AjnI	CCWGG	5 cut(s)	525, 1005, 1866, 2194, 2437
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
Alw21I	GWGCWC	5 cut(s)	43, 1603, 1899, 2005, 2349
Alw26I	GTCTC	6 cut(s)	83, 159, 458, 1654, 1668, 2475
AlwI	GGATC	2 cut(s)	1877, 2449
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	6 cut(s)	13, 255, 1095, 1212, 2241, 2406
ApeKI	GCWGC	5 cut(s)	2054, 2093, 2123, 2126, 2375
ApoI	RAATTY	2 cut(s)	1437, 1768
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	2 cut(s)	1500, 2504
AsiGI	ACCGGT	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	1148
Asp718I	GGTACC	1 cut(s)	1110
AspLEI	GCGC	1 cut(s)	1511
AspS9I	GGNCC	6 cut(s)	13, 255, 390, 1213, 1514, 1864
AsuC2I	CCSGG	4 cut(s)	12, 253, 254, 364
AsuHPI	GGTGA	8 cut(s)	83, 1269, 1600, 1679, 2018, 2227, 2258, 2524
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	3 cut(s)	390, 1514, 1864
BalI	TGGCCA	1 cut(s)	2408
BanI	GGYRCC	1 cut(s)	1110
BanII	GRGCYC	2 cut(s)	43, 2005
BbsI	GAAGAC	3 cut(s)	279, 381, 1422
Bbv12I	GWGCWC	5 cut(s)	43, 1603, 1899, 2005, 2349
BbvI	GCAGC	5 cut(s)	2066, 2080, 2110, 2138, 2387
BccI	CCATC	9 cut(s)	236, 611, 721, 847, 990, 1211, 1618, 1775, 2161
BceAI	ACGGC	4 cut(s)	635, 939, 1110, 2004
BciT130I	CCWGG	5 cut(s)	527, 1007, 1868, 2196, 2439
BciVI	GTATCC	1 cut(s)	1700
BclI	TGATCA	2 cut(s)	319, 1101
BcnI	CCSGG	4 cut(s)	12, 253, 254, 364
BcoDI	GTCTC	6 cut(s)	83, 159, 458, 1654, 1668, 2475
BfaI	CTAG	2 cut(s)	741, 1491
BfmI	CTRYAG	4 cut(s)	1115, 1284, 1980, 2124
BfuAI	ACCTGC	2 cut(s)	791, 1122
BfuI	GTATCC	1 cut(s)	1700
BisI	GCNGC	5 cut(s)	2055, 2094, 2124, 2127, 2376
BlsI	GCNGC	5 cut(s)	2056, 2095, 2125, 2128, 2377
Bme1390I	CCNGG	9 cut(s)	12, 253, 254, 364, 527, 1007, 1868, 2196, 2439
Bme18I	GGWCC	3 cut(s)	390, 1514, 1864
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	6 cut(s)	13, 255, 390, 1213, 1514, 1864
BmiI	GGNNCC	2 cut(s)	391, 1112
BmrFI	CCNGG	9 cut(s)	12, 253, 254, 364, 527, 1007, 1868, 2196, 2439
BmsI	GCATC	6 cut(s)	540, 986, 1030, 1053, 1746, 1975
BpiI	GAAGAC	3 cut(s)	279, 381, 1422
BpmI	CTGGAG	2 cut(s)	1430, 2421
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	4 cut(s)	12, 253, 254, 364
Bsa29I	ATCGAT	1 cut(s)	2551
BsaAI	YACGTR	2 cut(s)	585, 2344
BsaBI	GATNNNNATC	1 cut(s)	2547
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	252, 420, 651, 1422, 2195
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	7 cut(s)	241, 272, 369, 532, 1286, 2311, 2566
Bse118I	RCCGGY	3 cut(s)	257, 265, 2243
Bse1I	ACTGG	2 cut(s)	1447, 2141
Bse3DI	GCAATG	4 cut(s)	214, 949, 1395, 2409
Bse8I	GATNNNNATC	1 cut(s)	2547
BseBI	CCWGG	5 cut(s)	527, 1007, 1868, 2196, 2439
BseCI	ATCGAT	1 cut(s)	2551
BseDI	CCNNGG	5 cut(s)	252, 420, 651, 1422, 2195
BseGI	GGATG	4 cut(s)	732, 977, 2176, 2257
BseJI	GATNNNNATC	1 cut(s)	2547
BseLI	CCNNNNNNNGG	7 cut(s)	241, 272, 369, 532, 1286, 2311, 2566
BseMI	GCAATG	4 cut(s)	214, 949, 1395, 2409
BseMII	CTCAG	1 cut(s)	1582
BseNI	ACTGG	2 cut(s)	1447, 2141
BseRI	GAGGAG	2 cut(s)	454, 1766
BseXI	GCAGC	5 cut(s)	2066, 2080, 2110, 2138, 2387
BseYI	CCCAGC	2 cut(s)	116, 2041
BsgI	GTGCAG	1 cut(s)	1045
BshFI	GGCC	6 cut(s)	15, 257, 1097, 1214, 2243, 2408
BshNI	GGYRCC	1 cut(s)	1110
BshTI	ACCGGT	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	2551
BsiHKAI	GWGCWC	5 cut(s)	43, 1603, 1899, 2005, 2349
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	7 cut(s)	11, 253, 258, 266, 363, 1932, 2244
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	7 cut(s)	241, 272, 369, 532, 1286, 2311, 2566
BsmAI	GTCTC	6 cut(s)	83, 159, 458, 1654, 1668, 2475
BsmBI	CGTCTC	2 cut(s)	83, 458
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	6 cut(s)	15, 257, 1097, 1214, 2243, 2408
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	5 cut(s)	43, 1603, 1899, 2005, 2349
Bsp1407I	TGTACA	1 cut(s)	1920
Bsp143I	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
BspACI	CCGC	4 cut(s)	214, 1107, 2029, 2091
BspANI	GGCC	6 cut(s)	15, 257, 1097, 1214, 2243, 2408
BspCNI	CTCAG	1 cut(s)	1581
BspDI	ATCGAT	1 cut(s)	2551
BspLI	GGNNCC	2 cut(s)	391, 1112
BspMAI	CTGCAG	3 cut(s)	1119, 1984, 2128
BspMI	ACCTGC	2 cut(s)	791, 1122
BspPI	GGATC	2 cut(s)	1877, 2449
BspT107I	GGYRCC	1 cut(s)	1110
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	4 cut(s)	214, 949, 1395, 2409
BsrFI	RCCGGY	3 cut(s)	257, 265, 2243
BsrGI	TGTACA	1 cut(s)	1920
BsrI	ACTGG	2 cut(s)	1447, 2141
BssAI	RCCGGY	3 cut(s)	257, 265, 2243
BssECI	CCNNGG	5 cut(s)	252, 420, 651, 1422, 2195
BssMI	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
Bst2UI	CCWGG	5 cut(s)	527, 1007, 1868, 2196, 2439
Bst4CI	ACNGT	8 cut(s)	898, 1019, 1423, 1528, 2273, 2396, 2486, 2494
Bst6I	CTCTTC	3 cut(s)	197, 959, 2355
BstAPI	GCANNNNNTGC	1 cut(s)	1394
BstAUI	TGTACA	1 cut(s)	1920
BstBAI	YACGTR	2 cut(s)	585, 2344
BstDEI	CTNAG	6 cut(s)	172, 1568, 1592, 1678, 2035, 2468
BstDSI	CCRYGG	2 cut(s)	651, 1422
BstENI	CCTNNNNNAGG	1 cut(s)	1284
BstF5I	GGATG	4 cut(s)	732, 977, 2176, 2257
BstHHI	GCGC	1 cut(s)	1511
BstKTI	GATC	6 cut(s)	322, 1104, 1701, 1885, 1918, 2444
BstMAI	GTCTC	6 cut(s)	83, 159, 458, 1654, 1668, 2475
BstMBI	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 254, 1385, 1394, 1403
BstNI	CCWGG	5 cut(s)	527, 1007, 1868, 2196, 2439
BstNSI	RCATGY	3 cut(s)	712, 1247, 1972
BstSCI	CCNGG	9 cut(s)	10, 251, 252, 362, 525, 1005, 1866, 2194, 2437
BstSFI	CTRYAG	4 cut(s)	1115, 1284, 1980, 2124
BstSNI	TACGTA	1 cut(s)	585
BstV1I	GCAGC	5 cut(s)	2066, 2080, 2110, 2138, 2387
BstV2I	GAAGAC	3 cut(s)	279, 381, 1422
BstX2I	RGATCY	1 cut(s)	2441
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	2441
Bsu15I	ATCGAT	1 cut(s)	2551
BsuI	GTATCC	1 cut(s)	1700
BsuRI	GGCC	6 cut(s)	15, 257, 1097, 1214, 2243, 2408
BsuTUI	ATCGAT	1 cut(s)	2551
BtgI	CCRYGG	2 cut(s)	651, 1422
BtgZI	GCGATG	2 cut(s)	968, 1964
BtsCI	GGATG	4 cut(s)	732, 977, 2176, 2257
BtsI	GCAGTG	2 cut(s)	1033, 1977
BtsIMutI	CAGTG	6 cut(s)	356, 1033, 1533, 1977, 2401, 2490
BveI	ACCTGC	2 cut(s)	791, 1122
CfoI	GCGC	1 cut(s)	1511
Cfr10I	RCCGGY	3 cut(s)	257, 265, 2243
Cfr13I	GGNCC	6 cut(s)	13, 255, 390, 1213, 1514, 1864
Cfr9I	CCCGGG	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	2551
CseI	GACGC	1 cut(s)	1313
Csp6I	GTAC	4 cut(s)	199, 1111, 1815, 1921
CspAI	ACCGGT	1 cut(s)	265
CspCI	CAANNNNNGTGG	4 cut(s)	286, 321, 990, 1025
CviQI	GTAC	4 cut(s)	199, 1111, 1815, 1921
DdeI	CTNAG	6 cut(s)	172, 1568, 1592, 1678, 2035, 2468
DpnI	GATC	6 cut(s)	321, 1103, 1700, 1884, 1917, 2443
DpnII	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	3 cut(s)	1095, 2241, 2406
Eam1104I	CTCTTC	3 cut(s)	197, 959, 2355
EarI	CTCTTC	3 cut(s)	197, 959, 2355
Ecl136II	GAGCTC	2 cut(s)	41, 2003
Eco105I	TACGTA	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	43, 2005
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	390, 1514, 1864
Eco53kI	GAGCTC	2 cut(s)	41, 2003
Eco57I	CTGAAG	3 cut(s)	1353, 1503, 2060
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	41, 2003
EcoNI	CCTNNNNNAGG	1 cut(s)	1284
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	5 cut(s)	525, 1005, 1866, 2194, 2437
EcoT38I	GRGCYC	2 cut(s)	43, 2005
Esp3I	CGTCTC	2 cut(s)	83, 458
FaqI	GGGAC	1 cut(s)	403
FauI	CCCGC	1 cut(s)	1100
FbaI	TGATCA	2 cut(s)	319, 1101
FblI	GTMKAC	3 cut(s)	262, 334, 1762
Fnu4HI	GCNGC	5 cut(s)	2055, 2094, 2124, 2127, 2376
FokI	GGATG	4 cut(s)	739, 964, 2183, 2244
FriOI	GRGCYC	2 cut(s)	43, 2005
Fsp4HI	GCNGC	5 cut(s)	2055, 2094, 2124, 2127, 2376
FspBI	CTAG	2 cut(s)	741, 1491
GlaI	GCGC	1 cut(s)	1510
GluI	GCNGC	5 cut(s)	2055, 2094, 2124, 2127, 2376
GsaI	CCCAGC	2 cut(s)	120, 2045
GsuI	CTGGAG	2 cut(s)	1430, 2421
HaeIII	GGCC	6 cut(s)	15, 257, 1097, 1214, 2243, 2408
HapII	CCGG	7 cut(s)	11, 253, 258, 266, 363, 1932, 2244
HgaI	GACGC	1 cut(s)	1313
HhaI	GCGC	1 cut(s)	1511
Hin6I	GCGC	1 cut(s)	1509
HinP1I	GCGC	1 cut(s)	1509
HincII	GTYRAC	1 cut(s)	1452
HindII	GTYRAC	1 cut(s)	1452
HindIII	AAGCTT	4 cut(s)	310, 831, 1937, 2063
HinfI	GANTC	4 cut(s)	444, 1954, 2087, 2543
HpaII	CCGG	7 cut(s)	11, 253, 258, 266, 363, 1932, 2244
HphI	GGTGA	8 cut(s)	83, 1269, 1600, 1679, 2018, 2227, 2258, 2524
Hpy166II	GTNNAC	9 cut(s)	201, 263, 335, 582, 876, 1452, 1482, 1763, 2026
Hpy188I	TCNGA	4 cut(s)	852, 1077, 2269, 2540
Hpy188III	TCNNGA	5 cut(s)	1331, 1657, 1704, 1739, 2452
Hpy8I	GTNNAC	9 cut(s)	201, 263, 335, 582, 876, 1452, 1482, 1763, 2026
HpyCH4III	ACNGT	8 cut(s)	898, 1019, 1423, 1528, 2273, 2396, 2486, 2494
HpyCH4IV	ACGT	4 cut(s)	76, 378, 584, 2343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 254, 1385, 1394, 1403
HpyF3I	CTNAG	6 cut(s)	172, 1568, 1592, 1678, 2035, 2468
HpySE526I	ACGT	4 cut(s)	76, 378, 584, 2343
HspAI	GCGC	1 cut(s)	1509
KpnI	GGTACC	1 cut(s)	1114
Ksp22I	TGATCA	2 cut(s)	319, 1101
Kzo9I	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
LmnI	GCTCC	4 cut(s)	1427, 1531, 1894, 2352
Lsp1109I	GCAGC	5 cut(s)	2066, 2080, 2110, 2138, 2387
LweI	GCATC	6 cut(s)	540, 986, 1030, 1053, 1746, 1975
MaeI	CTAG	2 cut(s)	741, 1491
MaeII	ACGT	4 cut(s)	76, 378, 584, 2343
MaeIII	GTNAC	8 cut(s)	500, 778, 808, 892, 1084, 1275, 1606, 2486
MalI	GATC	6 cut(s)	321, 1103, 1700, 1884, 1917, 2443
MboI	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
MboII	GAAGA	8 cut(s)	184, 279, 386, 935, 976, 1427, 2230, 2372
MflI	RGATCY	1 cut(s)	2441
MhlI	GDGCHC	5 cut(s)	43, 1603, 1899, 2005, 2349
MlsI	TGGCCA	1 cut(s)	2408
MluNI	TGGCCA	1 cut(s)	2408
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	2 cut(s)	513, 807
Mox20I	TGGCCA	1 cut(s)	2408
MroXI	GAANNNNTTC	1 cut(s)	1148
MscI	TGGCCA	1 cut(s)	2408
MslI	CAYNNNNRTG	3 cut(s)	688, 954, 1208
Msp20I	TGGCCA	1 cut(s)	2408
MspA1I	CMGCKG	3 cut(s)	1107, 2093, 2129
MspI	CCGG	7 cut(s)	11, 253, 258, 266, 363, 1932, 2244
MspR9I	CCNGG	9 cut(s)	12, 253, 254, 364, 527, 1007, 1868, 2196, 2439
MvaI	CCWGG	5 cut(s)	527, 1007, 1868, 2196, 2439
MwoI	GCNNNNNNNGC	5 cut(s)	213, 254, 1385, 1394, 1403
NciI	CCSGG	4 cut(s)	12, 253, 254, 364
NdeII	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
NlaIV	GGNNCC	2 cut(s)	391, 1112
NmeAIII	GCCGAG	1 cut(s)	1952
NmuCI	GTSAC	3 cut(s)	1275, 1606, 2486
NspI	RCATGY	3 cut(s)	712, 1247, 1972
PaeI	GCATGC	2 cut(s)	1247, 1972
PciI	ACATGT	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	1148
PfeI	GAWTC	3 cut(s)	1954, 2087, 2543
PflMI	CCANNNNNTGG	1 cut(s)	532
PfoI	TCCNGGA	2 cut(s)	1866, 2437
PinAI	ACCGGT	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	2056, 2095, 2125, 2128, 2377
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	2 cut(s)	585, 2344
PpuMI	RGGWCCY	1 cut(s)	390
PscI	ACATGT	1 cut(s)	708
PshBI	ATTAAT	2 cut(s)	1500, 2504
PsiI	TTATAA	4 cut(s)	659, 1047, 1256, 1961
Psp124BI	GAGCTC	2 cut(s)	43, 2005
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	5 cut(s)	525, 1005, 1866, 2194, 2437
PspFI	CCCAGC	2 cut(s)	116, 2041
PspGI	CCWGG	5 cut(s)	525, 1005, 1866, 2194, 2437
PspN4I	GGNNCC	2 cut(s)	391, 1112
PspPI	GGNCC	6 cut(s)	13, 255, 390, 1213, 1514, 1864
PspPPI	RGGWCCY	1 cut(s)	390
PstI	CTGCAG	3 cut(s)	1119, 1984, 2128
PsuI	RGATCY	1 cut(s)	2441
PvuII	CAGCTG	1 cut(s)	2129
RsaI	GTAC	4 cut(s)	200, 1112, 1816, 1922
RsaNI	GTAC	4 cut(s)	199, 1111, 1815, 1921
RseI	CAYNNNNRTG	3 cut(s)	688, 954, 1208
SacI	GAGCTC	2 cut(s)	43, 2005
SatI	GCNGC	5 cut(s)	2055, 2094, 2124, 2127, 2376
Sau3AI	GATC	6 cut(s)	319, 1101, 1698, 1882, 1915, 2441
Sau96I	GGNCC	6 cut(s)	13, 255, 390, 1213, 1514, 1864
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	9 cut(s)	12, 253, 254, 364, 527, 1007, 1868, 2196, 2439
SduI	GDGCHC	5 cut(s)	43, 1603, 1899, 2005, 2349
SfaNI	GCATC	6 cut(s)	540, 986, 1030, 1053, 1746, 1975
SfcI	CTRYAG	4 cut(s)	1115, 1284, 1980, 2124
SinI	GGWCC	3 cut(s)	390, 1514, 1864
SmaI	CCCGGG	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	688, 954, 1208
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SnaBI	TACGTA	1 cut(s)	585
SphI	GCATGC	2 cut(s)	1247, 1972
SsiI	CCGC	4 cut(s)	214, 1107, 2029, 2091
SspI	AATATT	6 cut(s)	991, 1633, 1746, 1858, 1879, 2116
SspMI	CTAG	2 cut(s)	741, 1491
SstI	GAGCTC	2 cut(s)	43, 2005
StyD4I	CCNGG	9 cut(s)	10, 251, 252, 362, 525, 1005, 1866, 2194, 2437
TaaI	ACNGT	8 cut(s)	898, 1019, 1423, 1528, 2273, 2396, 2486, 2494
TaiI	ACGT	4 cut(s)	79, 381, 587, 2346
TaqI	TCGA	4 cut(s)	147, 195, 402, 2551
TatI	WGTACW	3 cut(s)	198, 1814, 1920
TfiI	GAWTC	3 cut(s)	1954, 2087, 2543
TscAI	CASTG	6 cut(s)	356, 1033, 1533, 1984, 2401, 2497
TseFI	GTSAC	3 cut(s)	1275, 1606, 2486
TseI	GCWGC	5 cut(s)	2054, 2093, 2123, 2126, 2375
Tsp45I	GTSAC	3 cut(s)	1275, 1606, 2486
TspGWI	ACGGA	1 cut(s)	528
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	6 cut(s)	356, 1033, 1533, 1984, 2401, 2497
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	3 cut(s)	390, 1514, 1864
VspI	ATTAAT	2 cut(s)	1500, 2504
XagI	CCTNNNNNAGG	1 cut(s)	1284
XapI	RAATTY	2 cut(s)	1437, 1768
XceI	RCATGY	3 cut(s)	712, 1247, 1972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2567
XmaI	CCCGGG	1 cut(s)	252
XmiI	GTMKAC	3 cut(s)	262, 334, 1762
XmnI	GAANNNNTTC	1 cut(s)	1148
XspI	CTAG	2 cut(s)	741, 1491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.